Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:51 UTC on 2025-05-28. Successfully read inputs file ... Castro git describe: 25.05-3-g91c85de54 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-4-gc846aaab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01493061 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.335985749 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.340761472 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313887959 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.312364813 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.357248984 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307057364 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.293844735 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295721126 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295773516 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296639661 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007330488 seconds Ending run at 05:18:54 UTC on 2025-05-28. Run time = 3.327569051 Run time without initialization = 3.161633959 Average number of zones advanced per microsecond: 0.829 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3265 ... 3.3270 ... 3.3276 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1703 2.2153 2.2647 68.06% Gravity::make_radial_gravity() 21 0.2842 0.2914 0.3045 9.15% check_for_negative_density() 10 0.04302 0.09616 0.145 4.36% Castro::initData() 1 0.03738 0.07283 0.1014 3.05% Castro::estTimeStep() 21 0.02206 0.05834 0.09742 2.93% amrex::Copy() 193 0.06401 0.07783 0.08777 2.64% FabArray::ParallelCopy_finish() 41 0.03615 0.04475 0.07926 2.38% FabArray::setVal() 143 0.05557 0.06664 0.07358 2.21% Castro::normalize_species() 62 0.04487 0.04653 0.05293 1.59% Castro::reset_internal_energy(Fab) 1008 0.0445 0.04618 0.0485 1.46% FabArray::ParallelCopy_nowait() 41 0.03516 0.04038 0.04262 1.28% StateData::FillBoundary(geom) 41 0.02902 0.03213 0.03517 1.06% FillPatchIterator::Initialize 41 0.02712 0.03187 0.03449 1.04% Gravity::interpolate_monopole_grav() 21 0.0266 0.02675 0.02695 0.81% Castro::construct_new_gravity_source() 10 0.023 0.02433 0.02665 0.80% Castro::computeTemp() 63 0.01781 0.01813 0.0186 0.56% Castro::initialize_do_advance() 10 0.01174 0.01632 0.01784 0.54% Castro::initialize_advance() 10 0.005374 0.0107 0.01345 0.40% FabArray::Saxpy() 20 0.01045 0.01229 0.01341 0.40% VisMF::Write(FabArray) 2 0.009139 0.009751 0.01283 0.39% MultiFab::contains_nan() 20 0.01046 0.01128 0.01214 0.36% FabArray::setDomainBndry() 41 0.007194 0.009607 0.01106 0.33% Amr::writePlotFile() 2 0.007789 0.009653 0.01042 0.31% Castro::construct_old_gravity_source() 10 0.007021 0.009491 0.01002 0.30% Castro::initMFs() 1 0.006591 0.007129 0.008499 0.26% Castro::construct_new_source() 50 0.005502 0.00589 0.006087 0.18% main() 1 0.003575 0.004149 0.004433 0.13% Gravity::get_new_grav_vector() 11 0.00285 0.003438 0.003795 0.11% Amr::coarseTimeStep() 10 0.001778 0.002806 0.003659 0.11% Gravity::get_old_grav_vector() 10 0.001494 0.002007 0.002527 0.08% Castro::finalize_do_advance() 10 0.0005103 0.001247 0.001786 0.05% AmrLevel::FillPatch() 41 0.0007188 0.00101 0.001258 0.04% Amr::timeStep() 10 0.0001388 0.0001795 0.0003728 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002771 0.0002968 0.0003259 0.01% Castro::do_advance_ctu() 10 0.0001419 0.000164 0.0002234 0.01% Castro::clean_state() 62 0.0001493 0.0001614 0.000176 0.01% FillPatchIterator::FillFromLevel0() 41 9.312e-05 0.0001019 0.0001238 0.00% Castro::do_old_sources() 10 7.465e-05 9.342e-05 0.0001152 0.00% StateDataPhysBCFunct::() 41 9.013e-05 0.0001011 0.0001053 0.00% FabArray::ParallelCopy() 41 7.379e-05 8.836e-05 9.934e-05 0.00% Amr::FinalizeInit() 1 3.457e-06 1.56e-05 9.324e-05 0.00% Castro::Castro() 1 4.31e-05 6.27e-05 8.186e-05 0.00% Castro::construct_old_source() 50 4.446e-05 6.149e-05 6.85e-05 0.00% FillPatchSingleLevel 41 5.778e-05 6.197e-05 6.73e-05 0.00% Castro::do_new_sources() 10 5.135e-05 5.947e-05 6.53e-05 0.00% Castro::apply_source_to_state() 20 3.568e-05 4.505e-05 5.712e-05 0.00% Castro::advance() 10 4.045e-05 4.921e-05 5.651e-05 0.00% Castro::construct_old_gravity() 10 3.462e-05 4.077e-05 5.26e-05 0.00% Castro::subcycle_advance_ctu() 10 4.166e-05 4.741e-05 5.245e-05 0.00% Castro::construct_new_gravity() 10 2.728e-05 3.507e-05 4.849e-05 0.00% Amr::defBaseLevel() 1 3.286e-05 3.84e-05 4.509e-05 0.00% Castro::expand_state() 10 2.264e-05 2.704e-05 3.19e-05 0.00% Castro::check_for_nan() 20 2.448e-05 2.66e-05 2.853e-05 0.00% Castro::post_timestep() 10 1.523e-05 1.68e-05 2.01e-05 0.00% Castro::post_init() 1 1.342e-05 1.511e-05 1.723e-05 0.00% Castro::computeNewDt() 9 8.836e-06 1.041e-05 1.513e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.023e-05 1.111e-05 1.3e-05 0.00% Amr::InitializeInit() 1 2.271e-06 3.125e-06 6.369e-06 0.00% Amr::init() 1 1.61e-06 2.406e-06 5.57e-06 0.00% Castro::computeInitialDt() 2 3.435e-06 3.906e-06 4.769e-06 0.00% Amr::initialInit() 1 1.666e-06 1.799e-06 2.021e-06 0.00% Other 260 0.01471 0.01891 0.02105 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.327 3.327 3.328 100.00% Amr::coarseTimeStep() 10 3.15 3.15 3.15 94.66% Amr::timeStep() 10 3.135 3.136 3.137 94.28% Castro::advance() 10 3.119 3.12 3.121 93.78% Castro::subcycle_advance_ctu() 10 3.044 3.048 3.061 91.99% Castro::do_advance_ctu() 10 3.044 3.048 3.061 91.99% Castro::construct_ctu_hydro_source() 10 2.328 2.333 2.338 70.26% Gravity::make_radial_gravity() 21 0.3012 0.3077 0.3184 9.57% Gravity::get_new_grav_vector() 11 0.2028 0.2054 0.2069 6.22% AmrLevel::FillPatch() 41 0.1786 0.1909 0.2027 6.09% Castro::construct_old_gravity() 10 0.1775 0.1822 0.192 5.77% Gravity::get_old_grav_vector() 10 0.1768 0.1815 0.1914 5.75% Castro::construct_new_gravity() 10 0.1797 0.1816 0.1831 5.50% FillPatchIterator::Initialize 41 0.1476 0.1592 0.1782 5.35% Amr::init() 1 0.1643 0.1653 0.1657 4.98% Castro::initialize_do_advance() 10 0.1533 0.1594 0.1628 4.89% Amr::initialInit() 1 0.1492 0.1507 0.1515 4.55% check_for_negative_density() 10 0.04302 0.09616 0.145 4.36% FillPatchIterator::FillFromLevel0() 41 0.1107 0.1177 0.1438 4.32% FillPatchSingleLevel 41 0.1105 0.1176 0.1437 4.32% Amr::InitializeInit() 1 0.0591 0.09453 0.1234 3.71% Amr::defBaseLevel() 1 0.0591 0.09453 0.1234 3.71% Castro::clean_state() 62 0.1133 0.1164 0.1223 3.68% Castro::expand_state() 10 0.09915 0.1064 0.1154 3.47% FabArray::ParallelCopy() 41 0.07786 0.08531 0.1146 3.44% Castro::initData() 1 0.04127 0.07668 0.1053 3.16% Castro::estTimeStep() 21 0.02206 0.05834 0.09742 2.93% Castro::do_old_sources() 10 0.09034 0.09289 0.09528 2.86% Amr::FinalizeInit() 1 0.02809 0.05618 0.09212 2.77% amrex::Copy() 193 0.06401 0.07783 0.08777 2.64% FabArray::ParallelCopy_finish() 41 0.03615 0.04475 0.07926 2.38% FabArray::setVal() 143 0.05557 0.06664 0.07358 2.21% Castro::initialize_advance() 10 0.05479 0.0689 0.07286 2.19% Castro::do_new_sources() 10 0.06001 0.06383 0.07019 2.11% Castro::computeTemp() 63 0.0626 0.06461 0.06742 2.03% Castro::computeInitialDt() 2 0.002102 0.03059 0.0663 1.99% Castro::normalize_species() 62 0.04487 0.04653 0.05293 1.59% Castro::reset_internal_energy(MultiFab) 63 0.04479 0.04647 0.04883 1.47% Castro::reset_internal_energy(Fab) 1008 0.0445 0.04618 0.0485 1.46% FabArray::ParallelCopy_nowait() 41 0.03525 0.04047 0.0427 1.28% StateDataPhysBCFunct::() 41 0.02911 0.03223 0.03527 1.06% StateData::FillBoundary(geom) 41 0.02902 0.03213 0.03517 1.06% Castro::construct_new_source() 50 0.0285 0.03022 0.0327 0.98% Gravity::interpolate_monopole_grav() 21 0.0266 0.02675 0.02695 0.81% Castro::construct_new_gravity_source() 10 0.023 0.02433 0.02665 0.80% Castro::post_init() 1 0.02432 0.025 0.02545 0.76% Castro::finalize_do_advance() 10 0.01196 0.0192 0.02386 0.72% Amr::writePlotFile() 2 0.0216 0.02201 0.02252 0.68% Castro::post_timestep() 10 0.0154 0.01606 0.0176 0.53% Castro::apply_source_to_state() 20 0.01049 0.01234 0.01347 0.40% FabArray::Saxpy() 20 0.01045 0.01229 0.01341 0.40% VisMF::Write(FabArray) 2 0.009139 0.009751 0.01283 0.39% Castro::check_for_nan() 20 0.01049 0.01131 0.01217 0.37% MultiFab::contains_nan() 20 0.01046 0.01128 0.01214 0.36% Castro::Castro() 1 0.01019 0.01099 0.01192 0.36% FabArray::setDomainBndry() 41 0.007194 0.009607 0.01106 0.33% Castro::construct_old_source() 50 0.007065 0.009553 0.01008 0.30% Castro::construct_old_gravity_source() 10 0.007021 0.009491 0.01002 0.30% Castro::computeNewDt() 9 0.0098 0.00981 0.009821 0.30% Castro::initMFs() 1 0.006591 0.007129 0.008499 0.26% AmrLevel::AmrLevel(dm) 1 0.005407 0.005816 0.006397 0.19% Other 260 0.01929 0.02477 0.02786 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6778 KiB 6781 KiB 6783 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4570 KiB 4576 KiB 4593 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 201 KiB 216 KiB 232 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2809 KiB 2812 KiB 2813 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 235 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 39 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized