Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:45 UTC on 2025-05-29. Successfully read inputs file ... Castro git describe: 25.05-3-g91c85de54 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-5-g8098b6f6 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014604859 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.352528836 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.357715307 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.37593871 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.353860762 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.329426048 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303764008 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.348492212 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296783615 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296829784 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295620622 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007454545 seconds Ending run at 05:18:48 UTC on 2025-05-29. Run time = 3.495397279 Run time without initialization = 3.323459695 Average number of zones advanced per microsecond: 0.789 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4938 ... 3.4949 ... 3.4960 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1529 2.2298 2.3583 67.45% Gravity::make_radial_gravity() 21 0.3068 0.3134 0.3289 9.41% check_for_negative_density() 10 0.05628 0.1856 0.2659 7.61% Castro::initData() 1 0.03892 0.07321 0.1082 3.09% Castro::estTimeStep() 21 0.04294 0.0716 0.1001 2.86% FabArray::ParallelCopy_finish() 41 0.0391 0.05882 0.0855 2.45% amrex::Copy() 193 0.0631 0.07603 0.08406 2.40% FabArray::setVal() 143 0.06149 0.0704 0.08076 2.31% Castro::normalize_species() 62 0.04773 0.05105 0.05412 1.55% Castro::reset_internal_energy(Fab) 1008 0.0446 0.04761 0.04863 1.39% FabArray::ParallelCopy_nowait() 41 0.03408 0.03993 0.04209 1.20% FillPatchIterator::Initialize 41 0.02927 0.03258 0.03571 1.02% StateData::FillBoundary(geom) 41 0.02949 0.03234 0.03533 1.01% Castro::construct_new_gravity_source() 10 0.02053 0.02544 0.02977 0.85% Gravity::interpolate_monopole_grav() 21 0.02682 0.02763 0.02952 0.84% Castro::initialize_do_advance() 10 0.01393 0.01739 0.02053 0.59% Castro::computeTemp() 63 0.01806 0.01876 0.01942 0.56% FabArray::Saxpy() 20 0.009957 0.01207 0.01322 0.38% Castro::initialize_advance() 10 0.005687 0.01014 0.01244 0.36% Amr::writePlotFile() 2 0.007478 0.01005 0.0123 0.35% MultiFab::contains_nan() 20 0.01027 0.01107 0.01207 0.35% VisMF::Write(FabArray) 2 0.008492 0.009412 0.012 0.34% FabArray::setDomainBndry() 41 0.007474 0.00963 0.0111 0.32% Castro::construct_old_gravity_source() 10 0.006422 0.009122 0.01 0.29% Castro::initMFs() 1 0.006475 0.006942 0.008084 0.23% Amr::coarseTimeStep() 10 0.003912 0.007054 0.007846 0.22% Castro::enforce_min_density() 62 0.005792 0.006106 0.006447 0.18% Castro::construct_new_source() 50 0.005202 0.00591 0.006232 0.18% main() 1 0.003471 0.004007 0.004597 0.13% Gravity::get_new_grav_vector() 11 0.002836 0.003409 0.00373 0.11% Gravity::get_old_grav_vector() 10 0.001531 0.002004 0.002398 0.07% Castro::finalize_do_advance() 10 0.0005997 0.001128 0.001317 0.04% AmrLevel::FillPatch() 41 0.000808 0.0009342 0.001187 0.03% Amr::timeStep() 10 0.0001431 0.0001902 0.0004337 0.01% Castro::clean_state() 62 0.0001397 0.0001824 0.0003558 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002835 0.0002975 0.0003106 0.01% Castro::do_advance_ctu() 10 0.0001437 0.000171 0.0001945 0.01% StateDataPhysBCFunct::() 41 9.182e-05 0.0001019 0.0001174 0.00% FillPatchIterator::FillFromLevel0() 41 8.489e-05 0.0001013 0.0001173 0.00% Castro::do_old_sources() 10 7.752e-05 9.836e-05 0.0001042 0.00% FabArray::ParallelCopy() 41 7.75e-05 8.945e-05 9.834e-05 0.00% Amr::FinalizeInit() 1 3.598e-06 1.601e-05 9.701e-05 0.00% Castro::Castro() 1 4.381e-05 7.18e-05 9.221e-05 0.00% Castro::construct_old_source() 50 4.553e-05 6.537e-05 7.581e-05 0.00% FillPatchSingleLevel 41 5.364e-05 6.289e-05 6.942e-05 0.00% Castro::advance() 10 3.981e-05 5.318e-05 6.502e-05 0.00% Castro::do_new_sources() 10 5.629e-05 6.064e-05 6.494e-05 0.00% Castro::subcycle_advance_ctu() 10 4.579e-05 5.277e-05 6.335e-05 0.00% Amr::defBaseLevel() 1 4.001e-05 4.702e-05 5.323e-05 0.00% Castro::apply_source_to_state() 20 3.765e-05 4.311e-05 5.025e-05 0.00% Castro::construct_old_gravity() 10 3.219e-05 3.874e-05 4.363e-05 0.00% Castro::construct_new_gravity() 10 3.046e-05 3.503e-05 3.867e-05 0.00% Castro::expand_state() 10 2.179e-05 2.549e-05 3.157e-05 0.00% Castro::check_for_nan() 20 2.426e-05 2.696e-05 3.137e-05 0.00% Castro::post_timestep() 10 1.669e-05 1.883e-05 2.172e-05 0.00% Castro::post_init() 1 1.45e-05 1.611e-05 1.831e-05 0.00% Castro::computeNewDt() 9 8.991e-06 1.024e-05 1.217e-05 0.00% Amr::InitializeInit() 1 2.508e-06 3.124e-06 4.753e-06 0.00% Castro::computeInitialDt() 2 2.947e-06 3.615e-06 4.224e-06 0.00% Amr::initialInit() 1 1.364e-06 1.683e-06 2.116e-06 0.00% Amr::init() 1 1.521e-06 1.909e-06 2.09e-06 0.00% Other 199 0.01018 0.01246 0.01435 0.41% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.494 3.495 3.496 100.00% Amr::coarseTimeStep() 10 3.311 3.312 3.312 94.72% Amr::timeStep() 10 3.293 3.294 3.297 94.31% Castro::advance() 10 3.276 3.277 3.277 93.74% Castro::subcycle_advance_ctu() 10 3.193 3.2 3.209 91.80% Castro::do_advance_ctu() 10 3.193 3.2 3.209 91.80% Castro::construct_ctu_hydro_source() 10 2.435 2.438 2.441 69.82% Gravity::make_radial_gravity() 21 0.3221 0.3287 0.3419 9.78% check_for_negative_density() 10 0.05628 0.1856 0.2659 7.61% Gravity::get_new_grav_vector() 11 0.2222 0.2246 0.226 6.47% AmrLevel::FillPatch() 41 0.1906 0.2048 0.2141 6.12% Castro::construct_new_gravity() 10 0.2002 0.2019 0.2033 5.81% Castro::construct_old_gravity() 10 0.1846 0.1904 0.1999 5.72% Gravity::get_old_grav_vector() 10 0.1838 0.1896 0.1989 5.69% FillPatchIterator::Initialize 41 0.1622 0.1737 0.1865 5.34% Castro::initialize_do_advance() 10 0.1606 0.1687 0.1758 5.03% Amr::init() 1 0.1709 0.1716 0.1722 4.92% Amr::initialInit() 1 0.1559 0.157 0.1577 4.51% FillPatchIterator::FillFromLevel0() 41 0.1158 0.1315 0.1495 4.28% FillPatchSingleLevel 41 0.1157 0.1314 0.1494 4.27% Amr::InitializeInit() 1 0.06059 0.09468 0.1299 3.71% Amr::defBaseLevel() 1 0.06059 0.09467 0.1299 3.71% Castro::clean_state() 62 0.1181 0.1231 0.1266 3.62% Castro::expand_state() 10 0.1039 0.1142 0.1212 3.47% FabArray::ParallelCopy() 41 0.08021 0.09893 0.1197 3.43% Castro::initData() 1 0.04337 0.07731 0.1119 3.20% Castro::estTimeStep() 21 0.04294 0.0716 0.1001 2.86% Amr::FinalizeInit() 1 0.02601 0.06233 0.09689 2.77% Castro::do_old_sources() 10 0.09046 0.0934 0.09641 2.76% FabArray::ParallelCopy_finish() 41 0.0391 0.05882 0.0855 2.45% amrex::Copy() 193 0.0631 0.07603 0.08406 2.40% FabArray::setVal() 143 0.06149 0.0704 0.08076 2.31% Castro::initialize_advance() 10 0.063 0.07232 0.07981 2.28% Castro::do_new_sources() 10 0.05442 0.06696 0.07638 2.18% Castro::computeInitialDt() 2 0.002125 0.03802 0.07244 2.07% Castro::computeTemp() 63 0.06294 0.06667 0.06797 1.94% Castro::normalize_species() 62 0.04773 0.05105 0.05412 1.55% Castro::reset_internal_energy(MultiFab) 63 0.04488 0.04791 0.04893 1.40% Castro::reset_internal_energy(Fab) 1008 0.0446 0.04761 0.04863 1.39% FabArray::ParallelCopy_nowait() 41 0.03417 0.04002 0.04217 1.21% Castro::finalize_do_advance() 10 0.0159 0.02544 0.03786 1.08% Castro::construct_new_source() 50 0.02574 0.03135 0.03566 1.02% StateDataPhysBCFunct::() 41 0.02959 0.03244 0.03544 1.01% StateData::FillBoundary(geom) 41 0.02949 0.03234 0.03533 1.01% Castro::construct_new_gravity_source() 10 0.02053 0.02544 0.02977 0.85% Gravity::interpolate_monopole_grav() 21 0.02682 0.02763 0.02952 0.84% Castro::post_init() 1 0.02333 0.02363 0.02385 0.68% Amr::writePlotFile() 2 0.02196 0.02215 0.02257 0.65% Castro::post_timestep() 10 0.01576 0.01721 0.01966 0.56% Castro::apply_source_to_state() 20 0.009995 0.01211 0.01327 0.38% FabArray::Saxpy() 20 0.009957 0.01207 0.01322 0.38% Castro::check_for_nan() 20 0.0103 0.0111 0.0121 0.35% MultiFab::contains_nan() 20 0.01027 0.01107 0.01207 0.35% VisMF::Write(FabArray) 2 0.008492 0.009412 0.012 0.34% Castro::Castro() 1 0.01043 0.01092 0.01166 0.33% FabArray::setDomainBndry() 41 0.007474 0.00963 0.0111 0.32% Castro::construct_old_source() 50 0.006467 0.009187 0.01008 0.29% Castro::construct_old_gravity_source() 10 0.006422 0.009122 0.01 0.29% Castro::computeNewDt() 9 0.009268 0.009283 0.009295 0.27% Castro::initMFs() 1 0.006475 0.006942 0.008084 0.23% Castro::enforce_min_density() 62 0.005792 0.006106 0.006447 0.18% Other 199 0.02019 0.02449 0.02892 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 35 B 56 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6778 KiB 6785 KiB 6790 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4564 KiB 4574 KiB 4589 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 202 KiB 219 KiB 229 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2808 KiB 2811 KiB 2813 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 234 KiB 239 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 43 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized