Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:38 UTC on 2025-05-30. Successfully read inputs file ... Castro git describe: 25.05-3-g91c85de54 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.05-7-g7a7cfa62 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014399703 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343625296 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.333666304 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.309741712 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.308547287 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.350787603 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.302616717 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.293179159 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.300813045 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.294521331 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.292621979 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007485588 seconds Ending run at 05:18:42 UTC on 2025-05-30. Run time = 3.319845318 Run time without initialization = 3.142945334 Average number of zones advanced per microsecond: 0.834 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3175 ... 3.3191 ... 3.3199 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1539 2.2031 2.2489 67.74% Gravity::make_radial_gravity() 21 0.2916 0.2962 0.3112 9.37% check_for_negative_density() 10 0.04341 0.08762 0.1359 4.09% Castro::initData() 1 0.03698 0.07301 0.1134 3.42% Castro::estTimeStep() 21 0.03228 0.06834 0.1085 3.27% amrex::Copy() 193 0.06298 0.07781 0.0861 2.59% FabArray::ParallelCopy_finish() 41 0.03584 0.04615 0.08308 2.50% FabArray::setVal() 143 0.05204 0.06541 0.07079 2.13% Castro::reset_internal_energy(Fab) 1008 0.04247 0.04511 0.04791 1.44% Castro::normalize_species() 62 0.04483 0.04613 0.04733 1.43% FabArray::ParallelCopy_nowait() 41 0.03537 0.04071 0.04271 1.29% StateData::FillBoundary(geom) 41 0.03019 0.03195 0.03433 1.03% FillPatchIterator::Initialize 41 0.02729 0.03187 0.03405 1.03% Gravity::interpolate_monopole_grav() 21 0.02633 0.02661 0.02708 0.82% Castro::construct_new_gravity_source() 10 0.02281 0.02457 0.02703 0.81% Castro::computeTemp() 63 0.01677 0.01786 0.01857 0.56% Castro::initialize_do_advance() 10 0.01147 0.01604 0.01743 0.53% Castro::initialize_advance() 10 0.005159 0.0107 0.01365 0.41% FabArray::Saxpy() 20 0.01047 0.01257 0.01338 0.40% MultiFab::contains_nan() 20 0.01045 0.01124 0.01262 0.38% Amr::writePlotFile() 2 0.007265 0.01007 0.01242 0.37% VisMF::Write(FabArray) 2 0.008448 0.009557 0.01211 0.36% FabArray::setDomainBndry() 41 0.008298 0.009903 0.01105 0.33% Castro::construct_old_gravity_source() 10 0.006783 0.009565 0.01018 0.31% Castro::initMFs() 1 0.006441 0.006934 0.008312 0.25% Castro::enforce_min_density() 62 0.005531 0.006038 0.006416 0.19% Castro::construct_new_source() 50 0.005428 0.005999 0.006409 0.19% main() 1 0.003442 0.004196 0.004609 0.14% Gravity::get_new_grav_vector() 11 0.002786 0.003342 0.003625 0.11% Amr::coarseTimeStep() 10 0.001068 0.001884 0.002667 0.08% Gravity::get_old_grav_vector() 10 0.001611 0.002044 0.002403 0.07% Castro::finalize_do_advance() 10 0.0005208 0.001105 0.001319 0.04% AmrLevel::FillPatch() 41 0.000732 0.0009239 0.001105 0.03% Amr::timeStep() 10 0.000131 0.0001877 0.000482 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002809 0.0002957 0.0003229 0.01% Castro::do_advance_ctu() 10 0.0001377 0.000159 0.0001783 0.01% Castro::clean_state() 62 0.000142 0.0001596 0.0001744 0.01% FillPatchIterator::FillFromLevel0() 41 8.931e-05 0.0001064 0.0001327 0.00% Castro::do_old_sources() 10 6.416e-05 9.01e-05 0.0001058 0.00% StateDataPhysBCFunct::() 41 8.959e-05 9.529e-05 0.0001048 0.00% FabArray::ParallelCopy() 41 7.87e-05 8.879e-05 9.544e-05 0.00% Castro::Castro() 1 4.521e-05 6.377e-05 9.46e-05 0.00% Castro::construct_old_source() 50 4.551e-05 6.696e-05 8.001e-05 0.00% Castro::apply_source_to_state() 20 4.265e-05 4.987e-05 7.385e-05 0.00% Amr::FinalizeInit() 1 3.5e-06 1.278e-05 7.328e-05 0.00% Castro::do_new_sources() 10 4.89e-05 5.964e-05 7.274e-05 0.00% FillPatchSingleLevel 41 5.54e-05 6.336e-05 6.74e-05 0.00% Amr::defBaseLevel() 1 3.756e-05 4.643e-05 6.461e-05 0.00% Castro::subcycle_advance_ctu() 10 4.29e-05 5.039e-05 5.903e-05 0.00% Castro::advance() 10 3.928e-05 4.819e-05 5.548e-05 0.00% Castro::construct_old_gravity() 10 2.932e-05 3.932e-05 5.288e-05 0.00% Castro::construct_new_gravity() 10 2.917e-05 3.279e-05 4.24e-05 0.00% Castro::expand_state() 10 2.156e-05 2.427e-05 2.823e-05 0.00% Castro::check_for_nan() 20 2.42e-05 2.57e-05 2.774e-05 0.00% Castro::post_timestep() 10 1.29e-05 1.664e-05 2.033e-05 0.00% Castro::post_init() 1 1.357e-05 1.488e-05 1.711e-05 0.00% Castro::computeNewDt() 9 8.252e-06 9.656e-06 1.114e-05 0.00% Amr::InitializeInit() 1 2.336e-06 3.38e-06 5.986e-06 0.00% Castro::computeInitialDt() 2 3.29e-06 3.645e-06 3.921e-06 0.00% Amr::initialInit() 1 1.337e-06 1.8e-06 2.497e-06 0.00% Amr::init() 1 1.683e-06 1.911e-06 2.263e-06 0.00% Other 199 0.01026 0.01264 0.01444 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.317 3.319 3.32 100.00% Amr::coarseTimeStep() 10 3.131 3.131 3.131 94.31% Amr::timeStep() 10 3.118 3.119 3.12 93.98% Castro::advance() 10 3.103 3.103 3.104 93.49% Castro::subcycle_advance_ctu() 10 3.028 3.032 3.048 91.80% Castro::do_advance_ctu() 10 3.027 3.032 3.048 91.80% Castro::construct_ctu_hydro_source() 10 2.307 2.312 2.316 69.76% Gravity::make_radial_gravity() 21 0.3078 0.3122 0.324 9.76% AmrLevel::FillPatch() 41 0.1783 0.1927 0.2107 6.35% Gravity::get_new_grav_vector() 11 0.2065 0.2083 0.2102 6.33% Castro::construct_old_gravity() 10 0.18 0.1841 0.1938 5.84% Gravity::get_old_grav_vector() 10 0.1794 0.1834 0.1932 5.82% Castro::construct_new_gravity() 10 0.1853 0.1862 0.1874 5.64% FillPatchIterator::Initialize 41 0.1474 0.161 0.1861 5.60% Amr::init() 1 0.1753 0.1762 0.1765 5.32% Castro::initialize_do_advance() 10 0.155 0.1599 0.1658 4.99% Amr::initialInit() 1 0.1603 0.1615 0.162 4.88% FillPatchIterator::FillFromLevel0() 41 0.1095 0.1193 0.1497 4.51% FillPatchSingleLevel 41 0.1094 0.1191 0.1496 4.51% check_for_negative_density() 10 0.04341 0.08762 0.1359 4.09% Amr::InitializeInit() 1 0.05799 0.09429 0.1347 4.06% Amr::defBaseLevel() 1 0.05799 0.09429 0.1347 4.06% Castro::expand_state() 10 0.1001 0.1073 0.1199 3.61% Castro::clean_state() 62 0.1105 0.1148 0.1195 3.60% FabArray::ParallelCopy() 41 0.07699 0.08703 0.1186 3.57% Castro::initData() 1 0.04091 0.0768 0.1168 3.52% Castro::estTimeStep() 21 0.03228 0.06834 0.1085 3.27% Amr::FinalizeInit() 1 0.02551 0.06721 0.1039 3.13% Castro::do_old_sources() 10 0.08963 0.09327 0.09719 2.93% amrex::Copy() 193 0.06298 0.07781 0.0861 2.59% FabArray::ParallelCopy_finish() 41 0.03584 0.04615 0.08308 2.50% Castro::computeInitialDt() 2 0.002067 0.04335 0.07996 2.41% Castro::initialize_advance() 10 0.05166 0.06778 0.07251 2.18% FabArray::setVal() 143 0.05204 0.06541 0.07079 2.13% Castro::do_new_sources() 10 0.05858 0.06362 0.06945 2.09% Castro::computeTemp() 63 0.05976 0.06327 0.06681 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04276 0.0454 0.04823 1.45% Castro::reset_internal_energy(Fab) 1008 0.04247 0.04511 0.04791 1.44% Castro::normalize_species() 62 0.04483 0.04613 0.04733 1.43% FabArray::ParallelCopy_nowait() 41 0.03546 0.04079 0.0428 1.29% StateDataPhysBCFunct::() 41 0.03028 0.03205 0.03443 1.04% StateData::FillBoundary(geom) 41 0.03019 0.03195 0.03433 1.03% Castro::construct_new_source() 50 0.02824 0.03057 0.03333 1.00% Gravity::interpolate_monopole_grav() 21 0.02633 0.02661 0.02708 0.82% Castro::construct_new_gravity_source() 10 0.02281 0.02457 0.02703 0.81% Castro::post_init() 1 0.0231 0.02338 0.02358 0.71% Amr::writePlotFile() 2 0.0221 0.02223 0.02264 0.68% Castro::finalize_do_advance() 10 0.01147 0.01743 0.02208 0.67% Castro::post_timestep() 10 0.01541 0.01581 0.01646 0.50% Castro::apply_source_to_state() 20 0.01051 0.01262 0.01346 0.41% FabArray::Saxpy() 20 0.01047 0.01257 0.01338 0.40% Castro::check_for_nan() 20 0.01048 0.01126 0.01264 0.38% MultiFab::contains_nan() 20 0.01045 0.01124 0.01262 0.38% VisMF::Write(FabArray) 2 0.008448 0.009557 0.01211 0.36% Castro::Castro() 1 0.01044 0.01088 0.01166 0.35% FabArray::setDomainBndry() 41 0.008298 0.009903 0.01105 0.33% Castro::construct_old_source() 50 0.006829 0.009632 0.01025 0.31% Castro::construct_old_gravity_source() 10 0.006783 0.009565 0.01018 0.31% Castro::computeNewDt() 9 0.008668 0.008678 0.008694 0.26% Castro::initMFs() 1 0.006441 0.006934 0.008312 0.25% Castro::enforce_min_density() 62 0.005531 0.006038 0.006416 0.19% Other 199 0.0203 0.02403 0.02711 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6748 KiB 6756 KiB 6761 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4556 KiB 4563 KiB 4590 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 202 KiB 218 KiB 242 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2800 KiB 2804 KiB 2805 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 239 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 40 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized