Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:20:42 UTC on 2025-06-02. Successfully read inputs file ... Castro git describe: 25.05-3-g91c85de54 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.06 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014919636 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.353652163 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.335298022 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.339625879 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316016943 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.379646221 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.301651501 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.291452377 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29365583 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296162989 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297008636 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007465236 seconds Ending run at 05:20:45 UTC on 2025-06-02. Run time = 3.407289262 Run time without initialization = 3.217003036 Average number of zones advanced per microsecond: 0.815 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.4056 ... 3.4069 ... 3.4073 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1771 2.2173 2.2653 66.48% Gravity::make_radial_gravity() 21 0.2885 0.2994 0.3104 9.11% check_for_negative_density() 10 0.04764 0.0975 0.1384 4.06% Castro::initData() 1 0.03732 0.0751 0.1219 3.58% Castro::estTimeStep() 21 0.02742 0.07829 0.1131 3.32% amrex::Copy() 193 0.07986 0.08506 0.09475 2.78% FabArray::ParallelCopy_finish() 41 0.05206 0.06595 0.07923 2.33% FabArray::setVal() 143 0.06654 0.07073 0.07712 2.26% FabArray::ParallelCopy_nowait() 41 0.03926 0.0453 0.05377 1.58% Castro::normalize_species() 62 0.04532 0.04637 0.04845 1.42% Castro::reset_internal_energy(Fab) 1008 0.04044 0.04527 0.04691 1.38% FillPatchIterator::Initialize 41 0.02867 0.03429 0.03966 1.16% StateData::FillBoundary(geom) 41 0.03029 0.03305 0.03682 1.08% Castro::construct_new_gravity_source() 10 0.02287 0.02461 0.02824 0.83% Gravity::interpolate_monopole_grav() 21 0.02633 0.02669 0.02709 0.80% Castro::computeTemp() 63 0.01666 0.01805 0.01886 0.55% Castro::initialize_do_advance() 10 0.01654 0.01734 0.01781 0.52% Castro::initialize_advance() 10 0.01044 0.01236 0.01443 0.42% FabArray::Saxpy() 20 0.01129 0.01282 0.01364 0.40% MultiFab::contains_nan() 20 0.01097 0.01168 0.01234 0.36% FabArray::setDomainBndry() 41 0.007904 0.01063 0.01224 0.36% VisMF::Write(FabArray) 2 0.009282 0.009751 0.01209 0.35% Castro::construct_old_gravity_source() 10 0.008845 0.009839 0.01134 0.33% Amr::writePlotFile() 2 0.007576 0.01003 0.01071 0.31% Castro::initMFs() 1 0.006611 0.007268 0.00839 0.25% Castro::construct_new_source() 50 0.00593 0.006121 0.00631 0.19% main() 1 0.00353 0.004081 0.004746 0.14% Gravity::get_new_grav_vector() 11 0.003086 0.003514 0.003904 0.11% Amr::coarseTimeStep() 10 0.0008108 0.002526 0.003481 0.10% Gravity::get_old_grav_vector() 10 0.001681 0.002118 0.00243 0.07% Castro::finalize_do_advance() 10 0.001194 0.001357 0.001431 0.04% AmrLevel::FillPatch() 41 0.001037 0.001126 0.001307 0.04% Amr::timeStep() 10 0.0001417 0.0001861 0.0003756 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002824 0.0003018 0.0003247 0.01% Castro::do_advance_ctu() 10 0.000147 0.0001683 0.000204 0.01% Castro::clean_state() 62 0.0001416 0.0001648 0.0001823 0.01% Castro::do_old_sources() 10 7.984e-05 0.000104 0.0001272 0.00% StateDataPhysBCFunct::() 41 9.966e-05 0.0001118 0.0001225 0.00% FabArray::ParallelCopy() 41 8.981e-05 0.0001043 0.0001178 0.00% FillPatchIterator::FillFromLevel0() 41 9.975e-05 0.0001107 0.0001158 0.00% FillPatchSingleLevel 41 6.265e-05 6.783e-05 7.789e-05 0.00% Amr::FinalizeInit() 1 3.597e-06 1.375e-05 7.713e-05 0.00% Castro::construct_old_source() 50 6.506e-05 6.99e-05 7.401e-05 0.00% Castro::do_new_sources() 10 5.617e-05 6.312e-05 6.815e-05 0.00% Castro::Castro() 1 4.986e-05 5.601e-05 6.517e-05 0.00% Castro::advance() 10 4.348e-05 5.279e-05 6.477e-05 0.00% Castro::construct_old_gravity() 10 3.443e-05 4.92e-05 6.445e-05 0.00% Castro::subcycle_advance_ctu() 10 4.254e-05 5.279e-05 6.258e-05 0.00% Castro::apply_source_to_state() 20 4.299e-05 4.804e-05 5.467e-05 0.00% Amr::defBaseLevel() 1 3.599e-05 4.057e-05 4.502e-05 0.00% Castro::construct_new_gravity() 10 2.714e-05 3.388e-05 3.994e-05 0.00% Castro::expand_state() 10 2.454e-05 2.776e-05 3.376e-05 0.00% Castro::check_for_nan() 20 2.468e-05 2.813e-05 2.99e-05 0.00% Castro::post_init() 1 1.545e-05 1.69e-05 2.085e-05 0.00% Castro::post_timestep() 10 1.413e-05 1.627e-05 1.906e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.773e-06 1.131e-05 1.342e-05 0.00% Castro::computeNewDt() 9 9.517e-06 1.035e-05 1.162e-05 0.00% Amr::InitializeInit() 1 2.275e-06 3.162e-06 6.357e-06 0.00% Amr::init() 1 1.649e-06 2.4e-06 5.569e-06 0.00% Castro::computeInitialDt() 2 3.329e-06 3.867e-06 4.735e-06 0.00% Amr::initialInit() 1 1.57e-06 1.986e-06 2.505e-06 0.00% Other 260 0.01599 0.01942 0.02207 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.406 3.407 3.407 100.00% Amr::coarseTimeStep() 10 3.205 3.205 3.205 94.06% Amr::timeStep() 10 3.191 3.192 3.194 93.73% Castro::advance() 10 3.176 3.176 3.176 93.22% Castro::subcycle_advance_ctu() 10 3.096 3.099 3.102 91.05% Castro::do_advance_ctu() 10 3.096 3.099 3.102 91.05% Castro::construct_ctu_hydro_source() 10 2.328 2.336 2.341 68.69% Gravity::make_radial_gravity() 21 0.3052 0.3159 0.3275 9.61% AmrLevel::FillPatch() 41 0.2038 0.2255 0.2338 6.86% Gravity::get_new_grav_vector() 11 0.2104 0.2117 0.213 6.25% FillPatchIterator::Initialize 41 0.174 0.1897 0.1975 5.79% Castro::construct_old_gravity() 10 0.1806 0.1884 0.1962 5.76% Gravity::get_old_grav_vector() 10 0.1795 0.1876 0.1954 5.74% Amr::init() 1 0.1891 0.1902 0.1909 5.60% Castro::construct_new_gravity() 10 0.1847 0.1854 0.1861 5.46% Castro::initialize_do_advance() 10 0.1717 0.1777 0.1839 5.40% Amr::initialInit() 1 0.1741 0.175 0.1759 5.16% FillPatchIterator::FillFromLevel0() 41 0.1355 0.1448 0.1525 4.47% FillPatchSingleLevel 41 0.1354 0.1447 0.1523 4.47% Amr::InitializeInit() 1 0.05878 0.09682 0.1445 4.24% Amr::defBaseLevel() 1 0.05878 0.09681 0.1445 4.24% check_for_negative_density() 10 0.04764 0.0975 0.1384 4.06% Castro::expand_state() 10 0.1169 0.1233 0.1304 3.83% Castro::initData() 1 0.04126 0.07888 0.1258 3.69% FabArray::ParallelCopy() 41 0.1049 0.1115 0.1199 3.52% Castro::clean_state() 62 0.1088 0.1153 0.1198 3.52% Amr::FinalizeInit() 1 0.03077 0.07822 0.1168 3.43% Castro::do_old_sources() 10 0.09957 0.1093 0.1156 3.39% Castro::estTimeStep() 21 0.02742 0.07829 0.1131 3.32% amrex::Copy() 193 0.07986 0.08506 0.09475 2.78% Castro::computeInitialDt() 2 0.002378 0.0501 0.08876 2.61% FabArray::ParallelCopy_finish() 41 0.05206 0.06595 0.07923 2.33% FabArray::setVal() 143 0.06654 0.07073 0.07712 2.26% Castro::initialize_advance() 10 0.0701 0.07314 0.07695 2.26% Castro::do_new_sources() 10 0.06029 0.06459 0.07085 2.08% Castro::computeTemp() 63 0.05739 0.06362 0.0661 1.94% FabArray::ParallelCopy_nowait() 41 0.03937 0.0454 0.05388 1.58% Castro::normalize_species() 62 0.04532 0.04637 0.04845 1.42% Castro::reset_internal_energy(MultiFab) 63 0.04073 0.04557 0.04724 1.39% Castro::reset_internal_energy(Fab) 1008 0.04044 0.04527 0.04691 1.38% StateDataPhysBCFunct::() 41 0.03039 0.03316 0.03694 1.08% StateData::FillBoundary(geom) 41 0.03029 0.03305 0.03682 1.08% Castro::construct_new_source() 50 0.02899 0.03074 0.03452 1.01% Castro::construct_new_gravity_source() 10 0.02287 0.02461 0.02824 0.83% Castro::post_init() 1 0.02739 0.02759 0.02788 0.82% Gravity::interpolate_monopole_grav() 21 0.02633 0.02669 0.02709 0.80% Castro::finalize_do_advance() 10 0.0133 0.02044 0.02556 0.75% Amr::writePlotFile() 2 0.02246 0.02273 0.02306 0.68% Castro::post_timestep() 10 0.01522 0.01603 0.01756 0.52% Castro::apply_source_to_state() 20 0.01133 0.01287 0.01369 0.40% FabArray::Saxpy() 20 0.01129 0.01282 0.01364 0.40% Castro::check_for_nan() 20 0.011 0.01171 0.01237 0.36% MultiFab::contains_nan() 20 0.01097 0.01168 0.01234 0.36% FabArray::setDomainBndry() 41 0.007904 0.01063 0.01224 0.36% VisMF::Write(FabArray) 2 0.009282 0.009751 0.01209 0.35% Castro::Castro() 1 0.01008 0.01091 0.01189 0.35% Castro::construct_old_source() 50 0.008912 0.009909 0.01141 0.33% Castro::construct_old_gravity_source() 10 0.008845 0.009839 0.01134 0.33% Castro::computeNewDt() 9 0.009103 0.009118 0.00913 0.27% Castro::initMFs() 1 0.006611 0.007268 0.00839 0.25% AmrLevel::AmrLevel(dm) 1 0.005333 0.00584 0.006665 0.20% Other 260 0.02065 0.02547 0.02937 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8668 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6730 KiB 6735 KiB 6739 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4540 KiB 4544 KiB 4548 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 226 KiB 249 KiB 259 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2793 KiB 2795 KiB 2797 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 236 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 47 KiB 50 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 70 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized