Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:40 UTC on 2025-06-03. Successfully read inputs file ... Castro git describe: 25.05-3-g91c85de54 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.06 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014820204 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.355213456 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.343605849 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.33176474 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.337466831 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363800787 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30190167 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296674664 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297847632 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298374827 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298020738 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007499684 seconds Ending run at 05:18:43 UTC on 2025-06-03. Run time = 3.422465404 Run time without initialization = 3.237032925 Average number of zones advanced per microsecond: 0.810 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4206 ... 3.4219 ... 3.4227 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1380 2.2214 2.2710 66.35% Gravity::make_radial_gravity() 21 0.2935 0.3007 0.3116 9.11% check_for_negative_density() 10 0.03979 0.09152 0.1788 5.22% Castro::estTimeStep() 21 0.02674 0.08546 0.1231 3.60% Castro::initData() 1 0.03761 0.07339 0.1193 3.49% amrex::Copy() 193 0.07949 0.08345 0.08849 2.59% FabArray::setVal() 143 0.06672 0.07467 0.08761 2.56% FabArray::ParallelCopy_finish() 41 0.04447 0.06651 0.0828 2.42% Castro::normalize_species() 62 0.0454 0.04768 0.05037 1.47% Castro::reset_internal_energy(Fab) 1008 0.04606 0.04723 0.04979 1.45% FabArray::ParallelCopy_nowait() 41 0.03846 0.04205 0.04444 1.30% FillPatchIterator::Initialize 41 0.02866 0.0354 0.03913 1.14% StateData::FillBoundary(geom) 41 0.02984 0.03291 0.03652 1.07% Castro::construct_new_gravity_source() 10 0.023 0.02502 0.03241 0.95% Gravity::interpolate_monopole_grav() 21 0.02675 0.02725 0.02806 0.82% Castro::initialize_do_advance() 10 0.01571 0.01913 0.02288 0.67% Castro::computeTemp() 63 0.01828 0.01862 0.01891 0.55% FabArray::setDomainBndry() 41 0.007362 0.01107 0.01588 0.46% FabArray::Saxpy() 20 0.01128 0.01294 0.0141 0.41% Castro::initialize_advance() 10 0.01007 0.01205 0.01379 0.40% VisMF::Write(FabArray) 2 0.009259 0.009735 0.0122 0.36% MultiFab::contains_nan() 20 0.01055 0.0113 0.01194 0.35% Amr::writePlotFile() 2 0.007396 0.009914 0.01042 0.30% Castro::construct_old_gravity_source() 10 0.008953 0.009522 0.01009 0.29% Amr::coarseTimeStep() 10 0.001254 0.006706 0.01008 0.29% Castro::construct_new_source() 50 0.006216 0.006722 0.008646 0.25% Castro::initMFs() 1 0.006335 0.006708 0.008539 0.25% Castro::enforce_min_density() 62 0.005674 0.006043 0.006395 0.19% main() 1 0.003555 0.004026 0.00431 0.13% Gravity::get_new_grav_vector() 11 0.003182 0.003636 0.003999 0.12% Gravity::get_old_grav_vector() 10 0.001851 0.002143 0.002424 0.07% Castro::finalize_do_advance() 10 0.001302 0.001388 0.0016 0.05% AmrLevel::FillPatch() 41 0.0008588 0.0009591 0.001012 0.03% Amr::timeStep() 10 0.0001469 0.0001973 0.000397 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002822 0.0003023 0.0003252 0.01% Castro::do_advance_ctu() 10 0.0001542 0.0001713 0.0001857 0.01% Castro::clean_state() 62 0.0001437 0.0001597 0.0001832 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001065 0.0001162 0.0001261 0.00% Castro::do_old_sources() 10 8.734e-05 0.0001003 0.0001203 0.00% StateDataPhysBCFunct::() 41 9.488e-05 0.000105 0.0001177 0.00% FabArray::ParallelCopy() 41 8.917e-05 9.513e-05 0.0001044 0.00% Castro::Castro() 1 4.268e-05 7.728e-05 0.0001031 0.00% Castro::construct_old_source() 50 6.016e-05 7.329e-05 9.442e-05 0.00% Amr::FinalizeInit() 1 4.124e-06 1.573e-05 9.091e-05 0.00% FillPatchSingleLevel 41 6.36e-05 6.7e-05 7.202e-05 0.00% Castro::do_new_sources() 10 5.389e-05 6.283e-05 6.856e-05 0.00% Castro::computeNewDt() 9 8.613e-06 2.051e-05 6.336e-05 0.00% Castro::apply_source_to_state() 20 4.55e-05 5.308e-05 6.218e-05 0.00% Castro::subcycle_advance_ctu() 10 4.624e-05 5.239e-05 5.817e-05 0.00% Castro::advance() 10 4.576e-05 5.02e-05 5.681e-05 0.00% Castro::construct_old_gravity() 10 3.676e-05 4.466e-05 5.327e-05 0.00% Amr::defBaseLevel() 1 3.572e-05 3.933e-05 4.674e-05 0.00% Castro::construct_new_gravity() 10 2.994e-05 3.432e-05 3.841e-05 0.00% Castro::check_for_nan() 20 2.608e-05 2.859e-05 3.286e-05 0.00% Castro::expand_state() 10 2.3e-05 2.709e-05 3.188e-05 0.00% Castro::post_timestep() 10 1.541e-05 1.964e-05 2.429e-05 0.00% Castro::post_init() 1 1.475e-05 1.712e-05 2.206e-05 0.00% Amr::InitializeInit() 1 2.41e-06 3.086e-06 5.434e-06 0.00% Amr::init() 1 1.56e-06 2.56e-06 5.083e-06 0.00% Castro::computeInitialDt() 2 2.958e-06 3.626e-06 4.243e-06 0.00% Amr::initialInit() 1 1.434e-06 1.953e-06 2.752e-06 0.00% Other 199 0.01037 0.01266 0.01438 0.42% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.421 3.422 3.423 100.00% Amr::coarseTimeStep() 10 3.225 3.225 3.225 94.23% Amr::timeStep() 10 3.204 3.205 3.21 93.79% Castro::advance() 10 3.188 3.188 3.19 93.21% Castro::subcycle_advance_ctu() 10 3.098 3.109 3.115 91.02% Castro::do_advance_ctu() 10 3.098 3.109 3.115 91.02% Castro::construct_ctu_hydro_source() 10 2.333 2.335 2.339 68.34% Gravity::make_radial_gravity() 21 0.3103 0.3178 0.3271 9.56% AmrLevel::FillPatch() 41 0.2054 0.2214 0.239 6.98% Gravity::get_new_grav_vector() 11 0.2087 0.2103 0.2117 6.18% FillPatchIterator::Initialize 41 0.1748 0.1884 0.2043 5.97% Castro::construct_old_gravity() 10 0.1874 0.193 0.2017 5.89% Gravity::get_old_grav_vector() 10 0.1863 0.1921 0.201 5.87% Castro::initialize_do_advance() 10 0.1744 0.1836 0.1939 5.67% Castro::construct_new_gravity() 10 0.1856 0.1864 0.1873 5.47% Amr::init() 1 0.184 0.1848 0.1853 5.41% check_for_negative_density() 10 0.03979 0.09152 0.1788 5.22% Amr::initialInit() 1 0.1688 0.1697 0.1701 4.97% FillPatchIterator::FillFromLevel0() 41 0.1243 0.1419 0.1574 4.60% FillPatchSingleLevel 41 0.1242 0.1418 0.1573 4.60% Amr::InitializeInit() 1 0.05924 0.09483 0.1412 4.13% Amr::defBaseLevel() 1 0.05924 0.09483 0.1412 4.12% Castro::expand_state() 10 0.115 0.1271 0.1392 4.07% FabArray::ParallelCopy() 41 0.08747 0.1087 0.1252 3.66% Castro::clean_state() 62 0.1157 0.1192 0.1249 3.65% Castro::estTimeStep() 21 0.02674 0.08546 0.1231 3.60% Castro::initData() 1 0.04174 0.07744 0.123 3.59% Amr::FinalizeInit() 1 0.02785 0.07483 0.1106 3.23% Castro::do_old_sources() 10 0.09207 0.102 0.1046 3.06% amrex::Copy() 193 0.07949 0.08345 0.08849 2.59% FabArray::setVal() 143 0.06672 0.07467 0.08761 2.56% Castro::initialize_advance() 10 0.06918 0.07573 0.08616 2.52% Castro::computeInitialDt() 2 0.002265 0.04926 0.08509 2.49% FabArray::ParallelCopy_finish() 41 0.04447 0.06651 0.0828 2.42% Castro::do_new_sources() 10 0.06242 0.06668 0.0792 2.31% Castro::computeTemp() 63 0.06462 0.06615 0.06897 2.02% Castro::normalize_species() 62 0.0454 0.04768 0.05037 1.47% Castro::reset_internal_energy(MultiFab) 63 0.04634 0.04754 0.05012 1.46% Castro::reset_internal_energy(Fab) 1008 0.04606 0.04723 0.04979 1.45% FabArray::ParallelCopy_nowait() 41 0.03857 0.04214 0.04453 1.30% Castro::construct_new_source() 50 0.02935 0.03175 0.04105 1.20% StateDataPhysBCFunct::() 41 0.02994 0.03302 0.03663 1.07% StateData::FillBoundary(geom) 41 0.02984 0.03291 0.03652 1.07% Castro::construct_new_gravity_source() 10 0.023 0.02502 0.03241 0.95% Castro::finalize_do_advance() 10 0.013 0.02533 0.02956 0.86% Gravity::interpolate_monopole_grav() 21 0.02675 0.02725 0.02806 0.82% Castro::post_init() 1 0.02481 0.02495 0.02516 0.74% Amr::writePlotFile() 2 0.02257 0.02267 0.02275 0.66% Castro::post_timestep() 10 0.01564 0.01661 0.01943 0.57% FabArray::setDomainBndry() 41 0.007362 0.01107 0.01588 0.46% Castro::apply_source_to_state() 20 0.01132 0.013 0.01415 0.41% FabArray::Saxpy() 20 0.01128 0.01294 0.0141 0.41% Castro::computeNewDt() 9 0.01049 0.01228 0.01292 0.38% VisMF::Write(FabArray) 2 0.009259 0.009735 0.0122 0.36% Castro::check_for_nan() 20 0.01058 0.01133 0.01196 0.35% MultiFab::contains_nan() 20 0.01055 0.0113 0.01194 0.35% Castro::Castro() 1 0.01061 0.01103 0.01189 0.35% Castro::construct_old_source() 50 0.009014 0.009595 0.01017 0.30% Castro::construct_old_gravity_source() 10 0.008953 0.009522 0.01009 0.29% Castro::initMFs() 1 0.006335 0.006708 0.008539 0.25% Castro::enforce_min_density() 62 0.005674 0.006043 0.006395 0.19% Other 199 0.02045 0.02447 0.02891 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8671 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6742 KiB 6749 KiB 6751 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4524 KiB 4538 KiB 4547 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 227 KiB 247 KiB 269 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2790 KiB 2794 KiB 2796 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 236 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 50 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 72 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized