Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:09 UTC on 2025-06-04. Successfully read inputs file ... Castro git describe: 25.05-4-ga426b7505 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.06 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01465582 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.362661586 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.337425805 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.319686447 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.318733149 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.356122169 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.333333064 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.319737076 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.317933609 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.321173407 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.313437904 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010391546 seconds Ending run at 05:19:12 UTC on 2025-06-04. Run time = 3.482763357 Run time without initialization = 3.317862337 Average number of zones advanced per microsecond: 0.790 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4813 ... 3.4822 ... 3.4828 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2275 2.2789 2.3662 67.94% Gravity::make_radial_gravity() 21 0.2885 0.2988 0.3249 9.33% check_for_negative_density() 10 0.03293 0.1172 0.1736 4.98% FabArray::ParallelCopy_finish() 41 0.03756 0.05422 0.1199 3.44% Castro::initData() 1 0.0397 0.07159 0.1012 2.91% amrex::Copy() 193 0.06088 0.08717 0.09966 2.86% FabArray::setVal() 143 0.05875 0.08474 0.09287 2.67% Castro::estTimeStep() 21 0.02296 0.05685 0.09073 2.61% Castro::normalize_species() 62 0.04505 0.04836 0.05137 1.47% Castro::reset_internal_energy(Fab) 1008 0.04619 0.04794 0.04963 1.42% FabArray::ParallelCopy_nowait() 41 0.03571 0.04318 0.04606 1.32% FillPatchIterator::Initialize 41 0.02631 0.03404 0.03884 1.12% StateData::FillBoundary(geom) 41 0.02898 0.03277 0.03551 1.02% Castro::construct_new_gravity_source() 10 0.02523 0.02772 0.03054 0.88% Gravity::interpolate_monopole_grav() 21 0.02655 0.02705 0.02743 0.79% Castro::initialize_do_advance() 10 0.01031 0.01833 0.02141 0.61% Castro::computeTemp() 63 0.01816 0.01857 0.01945 0.56% FabArray::Saxpy() 20 0.01274 0.01525 0.0161 0.46% Castro::construct_old_gravity_source() 10 0.006589 0.01164 0.01483 0.43% VisMF::Write(FabArray) 2 0.009059 0.009998 0.01463 0.42% MultiFab::contains_nan() 20 0.01078 0.01199 0.01419 0.41% Castro::initialize_advance() 10 0.004237 0.01197 0.01376 0.39% FabArray::setDomainBndry() 41 0.006944 0.01049 0.01284 0.37% Amr::writePlotFile() 2 0.007801 0.0109 0.0117 0.34% Castro::initMFs() 1 0.006388 0.006815 0.008581 0.25% Castro::construct_new_source() 50 0.006532 0.007376 0.007827 0.22% Castro::enforce_min_density() 62 0.006017 0.00648 0.007316 0.21% main() 1 0.004999 0.006122 0.006506 0.19% Gravity::get_new_grav_vector() 11 0.002627 0.00354 0.004659 0.13% Amr::coarseTimeStep() 10 0.001962 0.002989 0.004145 0.12% Gravity::get_old_grav_vector() 10 0.001431 0.002138 0.00269 0.08% Castro::finalize_do_advance() 10 0.0007454 0.001164 0.00129 0.04% AmrLevel::FillPatch() 41 0.0009043 0.001046 0.001153 0.03% Amr::timeStep() 10 0.0001183 0.0001959 0.0003955 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002833 0.0003088 0.0003361 0.01% Castro::do_advance_ctu() 10 0.0001584 0.0001825 0.0002091 0.01% Castro::clean_state() 62 0.0001592 0.0001785 0.0002024 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001079 0.0001222 0.0001402 0.00% Castro::do_old_sources() 10 8.792e-05 0.0001154 0.0001373 0.00% StateDataPhysBCFunct::() 41 9.332e-05 0.0001031 0.0001248 0.00% Castro::construct_old_source() 50 5.783e-05 8.856e-05 0.0001171 0.00% FabArray::ParallelCopy() 41 8.868e-05 9.683e-05 0.0001059 0.00% Castro::Castro() 1 4.516e-05 7.701e-05 9.714e-05 0.00% Castro::do_new_sources() 10 6.07e-05 7.224e-05 8.677e-05 0.00% Amr::FinalizeInit() 1 4.609e-06 1.526e-05 8.571e-05 0.00% FillPatchSingleLevel 41 6.166e-05 6.799e-05 7.589e-05 0.00% Castro::subcycle_advance_ctu() 10 5.064e-05 6.032e-05 6.884e-05 0.00% Castro::apply_source_to_state() 20 5.312e-05 5.947e-05 6.499e-05 0.00% Castro::advance() 10 4.579e-05 5.586e-05 6.349e-05 0.00% Amr::defBaseLevel() 1 3.592e-05 5.337e-05 6.078e-05 0.00% Castro::construct_old_gravity() 10 3.308e-05 3.964e-05 4.733e-05 0.00% Castro::construct_new_gravity() 10 3.081e-05 3.422e-05 4.072e-05 0.00% Castro::expand_state() 10 2.116e-05 3.158e-05 3.939e-05 0.00% Castro::check_for_nan() 20 2.463e-05 2.815e-05 3.112e-05 0.00% Castro::post_timestep() 10 1.427e-05 1.861e-05 2.564e-05 0.00% Castro::post_init() 1 1.331e-05 1.731e-05 2.094e-05 0.00% Castro::computeNewDt() 9 8.705e-06 1.016e-05 1.153e-05 0.00% Amr::initialInit() 1 1.74e-06 3.254e-06 1.072e-05 0.00% Amr::init() 1 1.578e-06 2.536e-06 6.472e-06 0.00% Amr::InitializeInit() 1 2.43e-06 3.513e-06 6.454e-06 0.00% Castro::computeInitialDt() 2 3.484e-06 4.218e-06 5.418e-06 0.00% Other 199 0.009416 0.01287 0.01447 0.42% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.481 3.482 3.483 100.00% Amr::coarseTimeStep() 10 3.301 3.301 3.301 94.78% Amr::timeStep() 10 3.287 3.288 3.289 94.44% Castro::advance() 10 3.271 3.272 3.272 93.95% Castro::subcycle_advance_ctu() 10 3.173 3.182 3.209 92.14% Castro::do_advance_ctu() 10 3.173 3.182 3.209 92.14% Castro::construct_ctu_hydro_source() 10 2.413 2.418 2.424 69.59% Gravity::make_radial_gravity() 21 0.3066 0.3161 0.3373 9.69% AmrLevel::FillPatch() 41 0.1964 0.21 0.2416 6.94% FillPatchIterator::Initialize 41 0.1656 0.1752 0.2184 6.27% Gravity::get_new_grav_vector() 11 0.2094 0.2109 0.213 6.12% Castro::construct_old_gravity() 10 0.1816 0.1894 0.2079 5.97% Gravity::get_old_grav_vector() 10 0.1809 0.1887 0.2072 5.95% Castro::construct_new_gravity() 10 0.1869 0.1879 0.1895 5.44% FillPatchIterator::FillFromLevel0() 41 0.1174 0.1307 0.1851 5.32% FillPatchSingleLevel 41 0.1172 0.1305 0.185 5.31% Castro::initialize_do_advance() 10 0.1615 0.1698 0.1782 5.12% check_for_negative_density() 10 0.03293 0.1172 0.1736 4.98% Amr::init() 1 0.1633 0.1644 0.1646 4.72% FabArray::ParallelCopy() 41 0.08279 0.0976 0.1559 4.47% Amr::initialInit() 1 0.1485 0.1499 0.1502 4.31% Castro::expand_state() 10 0.1041 0.1134 0.1324 3.80% Castro::clean_state() 62 0.1176 0.1209 0.1241 3.56% Amr::InitializeInit() 1 0.06175 0.09344 0.1231 3.54% Amr::defBaseLevel() 1 0.06175 0.09343 0.1231 3.54% FabArray::ParallelCopy_finish() 41 0.03756 0.05422 0.1199 3.44% Castro::do_old_sources() 10 0.1066 0.1099 0.113 3.24% Castro::initData() 1 0.04403 0.07569 0.1054 3.03% amrex::Copy() 193 0.06088 0.08717 0.09966 2.86% Castro::initialize_advance() 10 0.05738 0.0854 0.09413 2.70% FabArray::setVal() 143 0.05875 0.08474 0.09287 2.67% Castro::estTimeStep() 21 0.02296 0.05685 0.09073 2.61% Amr::FinalizeInit() 1 0.02706 0.05649 0.08836 2.54% Castro::do_new_sources() 10 0.06538 0.07111 0.07618 2.19% Castro::computeTemp() 63 0.06517 0.06682 0.06941 1.99% Castro::computeInitialDt() 2 0.00215 0.03169 0.06355 1.82% Castro::normalize_species() 62 0.04505 0.04836 0.05137 1.47% Castro::reset_internal_energy(MultiFab) 63 0.0465 0.04825 0.04996 1.43% Castro::reset_internal_energy(Fab) 1008 0.04619 0.04794 0.04963 1.42% FabArray::ParallelCopy_nowait() 41 0.03583 0.04328 0.04615 1.33% Castro::construct_new_source() 50 0.03176 0.0351 0.0383 1.10% StateDataPhysBCFunct::() 41 0.02907 0.03287 0.03561 1.02% StateData::FillBoundary(geom) 41 0.02898 0.03277 0.03551 1.02% Castro::construct_new_gravity_source() 10 0.02523 0.02772 0.03054 0.88% Gravity::interpolate_monopole_grav() 21 0.02655 0.02705 0.02743 0.79% Amr::writePlotFile() 2 0.02482 0.02493 0.0253 0.73% Castro::post_init() 1 0.02343 0.02412 0.02438 0.70% Castro::finalize_do_advance() 10 0.0123 0.01755 0.02345 0.67% Castro::post_timestep() 10 0.01544 0.01634 0.01741 0.50% Castro::apply_source_to_state() 20 0.01279 0.01531 0.01616 0.46% FabArray::Saxpy() 20 0.01274 0.01525 0.0161 0.46% Castro::construct_old_source() 50 0.006647 0.01173 0.01493 0.43% Castro::construct_old_gravity_source() 10 0.006589 0.01164 0.01483 0.43% VisMF::Write(FabArray) 2 0.009059 0.009998 0.01463 0.42% Castro::check_for_nan() 20 0.01081 0.01201 0.01422 0.41% MultiFab::contains_nan() 20 0.01078 0.01199 0.01419 0.41% FabArray::setDomainBndry() 41 0.006944 0.01049 0.01284 0.37% Castro::Castro() 1 0.01043 0.011 0.0119 0.34% Castro::computeNewDt() 9 0.008769 0.008788 0.008806 0.25% Castro::initMFs() 1 0.006388 0.006815 0.008581 0.25% Castro::enforce_min_density() 62 0.006017 0.00648 0.007316 0.21% Other 199 0.02047 0.02581 0.02881 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 36 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8666 KiB 8668 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6795 KiB 6796 KiB 6797 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7138 KiB 7139 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4552 KiB 4564 KiB 4600 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 209 KiB 225 KiB 262 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 18 KiB 18 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2815 KiB 2817 KiB 2818 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 224 KiB 231 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 42 KiB 70 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 69 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized