Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:21:42 UTC on 2025-06-05. Successfully read inputs file ... Castro git describe: 25.06 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.06-1-gb34e8966 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014020633 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343911834 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.323313022 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.319790325 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.312486884 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.353252072 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307151775 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296244564 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29547196 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.293835632 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.294240489 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007498908 seconds Ending run at 05:21:45 UTC on 2025-06-05. Run time = 3.329976242 Run time without initialization = 3.153046436 Average number of zones advanced per microsecond: 0.831 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3282 ... 3.3294 ... 3.3307 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2027 2.2231 2.2433 67.35% Gravity::make_radial_gravity() 21 0.2932 0.2988 0.312 9.37% Castro::initData() 1 0.03742 0.07371 0.1139 3.42% Castro::estTimeStep() 21 0.03182 0.07032 0.1062 3.19% FabArray::ParallelCopy_finish() 41 0.03857 0.04678 0.08652 2.60% check_for_negative_density() 10 0.03842 0.06155 0.08566 2.57% amrex::Copy() 193 0.06207 0.07858 0.08565 2.57% FabArray::setVal() 143 0.05148 0.06583 0.07113 2.14% Castro::normalize_species() 62 0.04684 0.05126 0.05495 1.65% Castro::reset_internal_energy(Fab) 1008 0.04461 0.04628 0.04788 1.44% FabArray::ParallelCopy_nowait() 41 0.03687 0.04122 0.04311 1.29% FillPatchIterator::Initialize 41 0.02824 0.03222 0.03486 1.05% StateData::FillBoundary(geom) 41 0.03071 0.03225 0.03458 1.04% Gravity::interpolate_monopole_grav() 21 0.02648 0.02681 0.02737 0.82% Castro::construct_new_gravity_source() 10 0.02316 0.02472 0.02648 0.80% Castro::computeTemp() 63 0.01741 0.01834 0.01907 0.57% Castro::initialize_do_advance() 10 0.01196 0.01655 0.01774 0.53% FabArray::Saxpy() 20 0.01027 0.0124 0.01406 0.42% Castro::initialize_advance() 10 0.005314 0.01079 0.0133 0.40% MultiFab::contains_nan() 20 0.01029 0.01114 0.01226 0.37% Amr::writePlotFile() 2 0.007186 0.009778 0.01175 0.35% VisMF::Write(FabArray) 2 0.008712 0.009385 0.01166 0.35% FabArray::setDomainBndry() 41 0.007527 0.009757 0.01114 0.33% Castro::construct_old_gravity_source() 10 0.006959 0.009615 0.01022 0.31% Castro::initMFs() 1 0.006323 0.006888 0.008011 0.24% Castro::construct_new_source() 50 0.005786 0.006141 0.006452 0.19% Castro::enforce_min_density() 62 0.005516 0.006038 0.006399 0.19% main() 1 0.003581 0.00432 0.004882 0.15% Amr::coarseTimeStep() 10 0.001432 0.00315 0.004537 0.14% Gravity::get_new_grav_vector() 11 0.002909 0.003357 0.0039 0.12% Gravity::get_old_grav_vector() 10 0.00183 0.002134 0.002452 0.07% Castro::finalize_do_advance() 10 0.000621 0.001116 0.001262 0.04% AmrLevel::FillPatch() 41 0.0008556 0.0009972 0.001153 0.03% Amr::timeStep() 10 0.0001452 0.0002034 0.0005222 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002806 0.0002936 0.0003094 0.01% Castro::do_advance_ctu() 10 0.0001468 0.0001609 0.000182 0.01% Castro::clean_state() 62 0.0001454 0.0001625 0.0001757 0.01% FillPatchIterator::FillFromLevel0() 41 9.774e-05 0.0001087 0.0001193 0.00% Castro::do_old_sources() 10 8.785e-05 9.717e-05 0.0001168 0.00% StateDataPhysBCFunct::() 41 8.977e-05 9.885e-05 0.0001072 0.00% FabArray::ParallelCopy() 41 8.653e-05 9.221e-05 0.000101 0.00% Amr::FinalizeInit() 1 3.763e-06 1.539e-05 9.122e-05 0.00% Castro::construct_old_source() 50 4.806e-05 6.748e-05 7.673e-05 0.00% Castro::Castro() 1 4.481e-05 5.493e-05 7.283e-05 0.00% FillPatchSingleLevel 41 5.788e-05 6.252e-05 6.57e-05 0.00% Castro::do_new_sources() 10 5.328e-05 5.939e-05 6.475e-05 0.00% Castro::advance() 10 3.987e-05 5.053e-05 6.302e-05 0.00% Castro::subcycle_advance_ctu() 10 4.714e-05 5.458e-05 5.917e-05 0.00% Amr::defBaseLevel() 1 4.039e-05 4.749e-05 5.675e-05 0.00% Castro::apply_source_to_state() 20 3.849e-05 4.64e-05 5.302e-05 0.00% Castro::construct_old_gravity() 10 3.257e-05 4.076e-05 4.662e-05 0.00% Castro::construct_new_gravity() 10 2.981e-05 3.329e-05 3.925e-05 0.00% Castro::expand_state() 10 2.225e-05 2.721e-05 3.238e-05 0.00% Castro::check_for_nan() 20 2.147e-05 2.675e-05 2.939e-05 0.00% Castro::post_timestep() 10 1.362e-05 1.773e-05 2.048e-05 0.00% Castro::post_init() 1 1.503e-05 1.718e-05 1.974e-05 0.00% Castro::computeNewDt() 9 9.214e-06 1.044e-05 1.323e-05 0.00% Amr::InitializeInit() 1 2.52e-06 3.373e-06 6.144e-06 0.00% Castro::computeInitialDt() 2 2.788e-06 3.853e-06 4.9e-06 0.00% Amr::init() 1 1.672e-06 2.102e-06 2.761e-06 0.00% Amr::initialInit() 1 1.236e-06 1.765e-06 2.393e-06 0.00% Other 199 0.01018 0.01232 0.01418 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.328 3.329 3.331 100.00% Amr::coarseTimeStep() 10 3.141 3.141 3.141 94.30% Amr::timeStep() 10 3.126 3.128 3.129 93.95% Castro::advance() 10 3.11 3.11 3.111 93.40% Castro::subcycle_advance_ctu() 10 3.034 3.037 3.054 91.70% Castro::do_advance_ctu() 10 3.034 3.037 3.054 91.70% Castro::construct_ctu_hydro_source() 10 2.302 2.307 2.31 69.34% Gravity::make_radial_gravity() 21 0.3107 0.315 0.3238 9.72% AmrLevel::FillPatch() 41 0.1824 0.1947 0.2163 6.49% Gravity::get_new_grav_vector() 11 0.2091 0.2105 0.2124 6.38% Castro::construct_old_gravity() 10 0.1822 0.1854 0.192 5.76% FillPatchIterator::Initialize 41 0.1519 0.1627 0.1915 5.75% Gravity::get_old_grav_vector() 10 0.1815 0.1847 0.1913 5.74% Castro::construct_new_gravity() 10 0.1868 0.1884 0.1902 5.71% Amr::init() 1 0.176 0.1765 0.1771 5.32% Castro::initialize_do_advance() 10 0.1572 0.1615 0.1721 5.17% Amr::initialInit() 1 0.1614 0.1621 0.1628 4.89% FillPatchIterator::FillFromLevel0() 41 0.1135 0.1207 0.1557 4.67% FillPatchSingleLevel 41 0.1134 0.1206 0.1556 4.67% Amr::InitializeInit() 1 0.05812 0.09473 0.1354 4.07% Amr::defBaseLevel() 1 0.05812 0.09473 0.1354 4.07% Castro::clean_state() 62 0.1151 0.1215 0.1278 3.84% Castro::expand_state() 10 0.1022 0.1083 0.1239 3.72% FabArray::ParallelCopy() 41 0.0804 0.08819 0.1236 3.71% Castro::initData() 1 0.04142 0.07778 0.1177 3.53% Castro::estTimeStep() 21 0.03182 0.07032 0.1062 3.19% Amr::FinalizeInit() 1 0.02622 0.06739 0.1047 3.14% Castro::do_old_sources() 10 0.09097 0.09539 0.09876 2.97% FabArray::ParallelCopy_finish() 41 0.03857 0.04678 0.08652 2.60% check_for_negative_density() 10 0.03842 0.06155 0.08566 2.57% amrex::Copy() 193 0.06207 0.07858 0.08565 2.57% Castro::computeInitialDt() 2 0.002174 0.04326 0.08045 2.42% Castro::initialize_advance() 10 0.05209 0.06968 0.07272 2.18% FabArray::setVal() 143 0.05148 0.06583 0.07113 2.14% Castro::do_new_sources() 10 0.06047 0.06492 0.07033 2.11% Castro::computeTemp() 63 0.06231 0.06491 0.06724 2.02% Castro::normalize_species() 62 0.04684 0.05126 0.05495 1.65% Castro::reset_internal_energy(MultiFab) 63 0.0449 0.04657 0.04816 1.45% Castro::reset_internal_energy(Fab) 1008 0.04461 0.04628 0.04788 1.44% FabArray::ParallelCopy_nowait() 41 0.03699 0.04132 0.04321 1.30% StateDataPhysBCFunct::() 41 0.0308 0.03235 0.03467 1.04% StateData::FillBoundary(geom) 41 0.03071 0.03225 0.03458 1.04% Castro::construct_new_source() 50 0.0294 0.03086 0.03293 0.99% Gravity::interpolate_monopole_grav() 21 0.02648 0.02681 0.02737 0.82% Castro::construct_new_gravity_source() 10 0.02316 0.02472 0.02648 0.80% Castro::post_init() 1 0.02295 0.02334 0.0237 0.71% Castro::finalize_do_advance() 10 0.01341 0.01922 0.0232 0.70% Amr::writePlotFile() 2 0.02178 0.02193 0.02233 0.67% Castro::post_timestep() 10 0.0156 0.01701 0.01848 0.55% Castro::apply_source_to_state() 20 0.01031 0.01244 0.01411 0.42% FabArray::Saxpy() 20 0.01027 0.0124 0.01406 0.42% Castro::check_for_nan() 20 0.01031 0.01116 0.01229 0.37% MultiFab::contains_nan() 20 0.01029 0.01114 0.01226 0.37% VisMF::Write(FabArray) 2 0.008712 0.009385 0.01166 0.35% Castro::Castro() 1 0.01 0.01063 0.01156 0.35% FabArray::setDomainBndry() 41 0.007527 0.009757 0.01114 0.33% Castro::construct_old_source() 50 0.007007 0.009682 0.0103 0.31% Castro::construct_old_gravity_source() 10 0.006959 0.009615 0.01022 0.31% Castro::computeNewDt() 9 0.008963 0.00897 0.008981 0.27% Castro::initMFs() 1 0.006323 0.006888 0.008011 0.24% Castro::enforce_min_density() 62 0.005516 0.006038 0.006399 0.19% Other 199 0.02032 0.02388 0.02715 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8654 KiB 8668 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6744 KiB 6756 KiB 6761 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7126 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4544 KiB 4556 KiB 4584 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 220 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2796 KiB 2801 KiB 2802 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 238 KiB 241 KiB 248 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 40 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 71 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized