Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:23:02 UTC on 2025-06-06. Successfully read inputs file ... Castro git describe: 25.06 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.06-2-ga9d8cc3d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015358618 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.332394786 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.335033041 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.308751927 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.310274881 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.347290418 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.300398952 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.292438895 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.292726077 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.294004236 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.293975768 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007395579 seconds Ending run at 05:23:05 UTC on 2025-06-06. Run time = 3.307282658 Run time without initialization = 3.119585225 Average number of zones advanced per microsecond: 0.840 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.3055 ... 3.3063 ... 3.3074 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1731 2.1985 2.2244 67.25% Gravity::make_radial_gravity() 21 0.2866 0.2927 0.3042 9.20% Castro::initData() 1 0.03843 0.07612 0.1197 3.62% Castro::estTimeStep() 21 0.03097 0.07184 0.1127 3.41% check_for_negative_density() 10 0.04927 0.07851 0.1065 3.22% amrex::Copy() 193 0.0637 0.0774 0.08715 2.63% FabArray::ParallelCopy_finish() 41 0.0346 0.04548 0.0802 2.42% FabArray::setVal() 143 0.05393 0.06554 0.07107 2.15% Castro::reset_internal_energy(Fab) 1008 0.04146 0.04419 0.04674 1.41% Castro::normalize_species() 62 0.04503 0.0457 0.04644 1.40% FabArray::ParallelCopy_nowait() 41 0.03539 0.04044 0.04229 1.28% StateData::FillBoundary(geom) 41 0.0294 0.03205 0.03489 1.05% FillPatchIterator::Initialize 41 0.02732 0.03174 0.03387 1.02% Gravity::interpolate_monopole_grav() 21 0.02633 0.02669 0.02693 0.81% Castro::construct_new_gravity_source() 10 0.02323 0.02455 0.02686 0.81% Castro::computeTemp() 63 0.01663 0.01755 0.01813 0.55% Castro::initialize_do_advance() 10 0.01169 0.01637 0.01787 0.54% FabArray::Saxpy() 20 0.0109 0.01237 0.0135 0.41% Amr::writePlotFile() 2 0.007494 0.01088 0.01334 0.40% Castro::initialize_advance() 10 0.005299 0.0106 0.01316 0.40% VisMF::Write(FabArray) 2 0.008454 0.009733 0.0128 0.39% MultiFab::contains_nan() 20 0.01026 0.01122 0.01204 0.36% FabArray::setDomainBndry() 41 0.00713 0.009562 0.01078 0.33% Castro::construct_old_gravity_source() 10 0.006896 0.00947 0.01012 0.31% Castro::initMFs() 1 0.006593 0.007229 0.007738 0.23% Castro::construct_new_source() 50 0.005657 0.005922 0.006181 0.19% main() 1 0.003592 0.00402 0.004307 0.13% Gravity::get_new_grav_vector() 11 0.002812 0.003317 0.003708 0.11% Gravity::get_old_grav_vector() 10 0.001761 0.002067 0.002504 0.08% Amr::coarseTimeStep() 10 0.001218 0.001835 0.002251 0.07% Castro::finalize_do_advance() 10 0.0005309 0.00101 0.001288 0.04% AmrLevel::FillPatch() 41 0.0008288 0.0009466 0.001066 0.03% Amr::timeStep() 10 0.0001332 0.0001968 0.0004606 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002868 0.0002998 0.0003509 0.01% Castro::do_advance_ctu() 10 0.0001531 0.0001778 0.0002258 0.01% Castro::clean_state() 62 0.0001493 0.0001683 0.0001932 0.01% FillPatchIterator::FillFromLevel0() 41 9.102e-05 0.000109 0.0001318 0.00% StateDataPhysBCFunct::() 41 9.462e-05 0.000102 0.0001182 0.00% Castro::do_old_sources() 10 8.733e-05 0.0001004 0.0001129 0.00% FabArray::ParallelCopy() 41 8.397e-05 9.357e-05 0.0001069 0.00% Castro::construct_old_source() 50 5.982e-05 7.086e-05 8.531e-05 0.00% FillPatchSingleLevel 41 6.097e-05 6.707e-05 7.443e-05 0.00% Castro::Castro() 1 5.194e-05 6.17e-05 7.426e-05 0.00% Castro::do_new_sources() 10 5.732e-05 6.592e-05 7.301e-05 0.00% Amr::FinalizeInit() 1 3.572e-06 1.255e-05 7.032e-05 0.00% Castro::subcycle_advance_ctu() 10 4.97e-05 5.652e-05 6.137e-05 0.00% Castro::check_for_nan() 20 2.849e-05 3.331e-05 5.969e-05 0.00% Castro::advance() 10 4.759e-05 5.459e-05 5.897e-05 0.00% Castro::apply_source_to_state() 20 4.253e-05 5.02e-05 5.811e-05 0.00% Amr::defBaseLevel() 1 3.851e-05 4.284e-05 5.24e-05 0.00% Castro::construct_old_gravity() 10 3.468e-05 4.084e-05 4.744e-05 0.00% Castro::construct_new_gravity() 10 2.837e-05 3.395e-05 3.817e-05 0.00% Castro::expand_state() 10 2.287e-05 2.691e-05 2.954e-05 0.00% Castro::post_init() 1 1.401e-05 1.602e-05 2.165e-05 0.00% Castro::post_timestep() 10 1.523e-05 1.701e-05 2.002e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.057e-05 1.144e-05 1.246e-05 0.00% Castro::computeNewDt() 9 9.313e-06 1.003e-05 1.1e-05 0.00% Amr::InitializeInit() 1 2.418e-06 3.254e-06 6.193e-06 0.00% Castro::computeInitialDt() 2 2.9e-06 3.779e-06 5.589e-06 0.00% Amr::init() 1 1.598e-06 2.275e-06 4.493e-06 0.00% Amr::initialInit() 1 1.278e-06 1.818e-06 2.543e-06 0.00% Other 260 0.01577 0.0188 0.02166 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.305 3.306 3.307 100.00% Amr::coarseTimeStep() 10 3.108 3.108 3.108 93.97% Amr::timeStep() 10 3.096 3.096 3.097 93.64% Castro::advance() 10 3.08 3.081 3.081 93.15% Castro::subcycle_advance_ctu() 10 3.006 3.01 3.024 91.43% Castro::do_advance_ctu() 10 3.006 3.01 3.024 91.43% Castro::construct_ctu_hydro_source() 10 2.293 2.298 2.303 69.63% Gravity::make_radial_gravity() 21 0.3028 0.3083 0.3169 9.58% Gravity::get_new_grav_vector() 11 0.2032 0.2053 0.2064 6.24% AmrLevel::FillPatch() 41 0.1811 0.1916 0.2048 6.19% Castro::construct_old_gravity() 10 0.1787 0.1829 0.1911 5.78% Gravity::get_old_grav_vector() 10 0.178 0.1822 0.1905 5.76% Amr::init() 1 0.1861 0.1866 0.1876 5.67% Castro::construct_new_gravity() 10 0.1788 0.1805 0.1815 5.49% FillPatchIterator::Initialize 41 0.1504 0.1597 0.18 5.44% Amr::initialInit() 1 0.1701 0.171 0.1718 5.20% Castro::initialize_do_advance() 10 0.1555 0.1596 0.1654 5.00% FillPatchIterator::FillFromLevel0() 41 0.1112 0.1184 0.1455 4.40% FillPatchSingleLevel 41 0.1111 0.1183 0.1454 4.40% Amr::InitializeInit() 1 0.06008 0.09782 0.1416 4.28% Amr::defBaseLevel() 1 0.06007 0.09782 0.1416 4.28% Castro::initData() 1 0.04239 0.08002 0.1236 3.74% Castro::expand_state() 10 0.1027 0.1071 0.1174 3.55% FabArray::ParallelCopy() 41 0.07621 0.0861 0.1158 3.50% Castro::clean_state() 62 0.1102 0.113 0.1154 3.49% Castro::estTimeStep() 21 0.03097 0.07184 0.1127 3.41% Amr::FinalizeInit() 1 0.02906 0.07315 0.1117 3.38% check_for_negative_density() 10 0.04927 0.07851 0.1065 3.22% Castro::do_old_sources() 10 0.08928 0.09226 0.09678 2.93% amrex::Copy() 193 0.0637 0.0774 0.08715 2.63% Castro::computeInitialDt() 2 0.00245 0.04678 0.08517 2.58% FabArray::ParallelCopy_finish() 41 0.0346 0.04548 0.0802 2.42% Castro::initialize_advance() 10 0.05272 0.0674 0.0713 2.16% FabArray::setVal() 143 0.05393 0.06554 0.07107 2.15% Castro::do_new_sources() 10 0.05982 0.06325 0.0687 2.08% Castro::computeTemp() 63 0.05845 0.06204 0.06514 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04175 0.04449 0.04703 1.42% Castro::reset_internal_energy(Fab) 1008 0.04146 0.04419 0.04674 1.41% Castro::normalize_species() 62 0.04503 0.0457 0.04644 1.40% FabArray::ParallelCopy_nowait() 41 0.03549 0.04053 0.04237 1.28% StateDataPhysBCFunct::() 41 0.02951 0.03216 0.03499 1.06% StateData::FillBoundary(geom) 41 0.0294 0.03205 0.03489 1.05% Castro::construct_new_source() 50 0.02908 0.03047 0.03282 0.99% Gravity::interpolate_monopole_grav() 21 0.02633 0.02669 0.02693 0.81% Castro::construct_new_gravity_source() 10 0.02323 0.02455 0.02686 0.81% Castro::post_init() 1 0.02572 0.02597 0.02612 0.79% Amr::writePlotFile() 2 0.02293 0.02315 0.02353 0.71% Castro::finalize_do_advance() 10 0.01191 0.01752 0.02144 0.65% Castro::post_timestep() 10 0.01498 0.01556 0.01615 0.49% Castro::apply_source_to_state() 20 0.01095 0.01242 0.01355 0.41% FabArray::Saxpy() 20 0.0109 0.01237 0.0135 0.41% VisMF::Write(FabArray) 2 0.008454 0.009733 0.0128 0.39% Castro::check_for_nan() 20 0.01029 0.01125 0.01207 0.36% MultiFab::contains_nan() 20 0.01026 0.01122 0.01204 0.36% Castro::Castro() 1 0.009822 0.01111 0.01183 0.36% FabArray::setDomainBndry() 41 0.00713 0.009562 0.01078 0.33% Castro::construct_old_source() 50 0.006956 0.00954 0.0102 0.31% Castro::construct_old_gravity_source() 10 0.006896 0.00947 0.01012 0.31% Castro::computeNewDt() 9 0.008555 0.008567 0.008581 0.26% Castro::initMFs() 1 0.006593 0.007229 0.007738 0.23% AmrLevel::AmrLevel(dm) 1 0.005406 0.006118 0.006677 0.20% Other 260 0.02043 0.02423 0.02833 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 36 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6724 KiB 6732 KiB 6737 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4541 KiB 4548 KiB 4571 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 218 KiB 236 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2790 KiB 2794 KiB 2795 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 237 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 39 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized