Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 16:56:56 UTC on 2025-06-07. Successfully read inputs file ... Castro git describe: 25.06 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.06-11-gea0a4a14 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014771397 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.350305294 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.339813806 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.321290528 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.315971458 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371344569 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.304481674 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295678057 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.294639238 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295630988 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.29502945 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008289927 seconds Ending run at 16:56:59 UTC on 2025-06-07. Run time = 3.380611024 Run time without initialization = 3.198175424 Average number of zones advanced per microsecond: 0.820 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3791 ... 3.3803 ... 3.3810 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1676 2.2009 2.2604 66.86% Gravity::make_radial_gravity() 21 0.2897 0.2974 0.3057 9.04% check_for_negative_density() 10 0.04227 0.1057 0.1434 4.24% Castro::initData() 1 0.03735 0.07441 0.1158 3.43% Castro::estTimeStep() 21 0.02272 0.07099 0.1118 3.31% amrex::Copy() 193 0.08127 0.08823 0.09923 2.93% FabArray::setVal() 143 0.06699 0.07185 0.07786 2.30% FabArray::ParallelCopy_finish() 41 0.03824 0.05347 0.06519 1.93% Castro::reset_internal_energy(Fab) 1008 0.04523 0.04627 0.04792 1.42% Castro::normalize_species() 62 0.04524 0.04574 0.04696 1.39% FabArray::ParallelCopy_nowait() 41 0.0402 0.0426 0.04381 1.30% FillPatchIterator::Initialize 41 0.02954 0.03454 0.03701 1.09% StateData::FillBoundary(geom) 41 0.0296 0.03323 0.03628 1.07% Gravity::interpolate_monopole_grav() 21 0.02679 0.02766 0.0292 0.86% Castro::construct_new_gravity_source() 10 0.02276 0.02423 0.02642 0.78% Castro::initialize_do_advance() 10 0.01674 0.0181 0.0193 0.57% Castro::computeTemp() 63 0.01775 0.01826 0.01874 0.55% Castro::initialize_advance() 10 0.01066 0.01258 0.01481 0.44% FabArray::Saxpy() 20 0.01196 0.01281 0.01376 0.41% FabArray::setDomainBndry() 41 0.008905 0.01098 0.01281 0.38% MultiFab::contains_nan() 20 0.01073 0.01152 0.01271 0.38% VisMF::Write(FabArray) 2 0.009127 0.009669 0.01211 0.36% Amr::writePlotFile() 2 0.008239 0.01077 0.01149 0.34% Castro::construct_old_gravity_source() 10 0.00931 0.009654 0.009967 0.29% Castro::initMFs() 1 0.006489 0.007029 0.007834 0.23% Castro::enforce_min_density() 62 0.005716 0.006181 0.006499 0.19% Castro::construct_new_source() 50 0.00605 0.006185 0.006386 0.19% main() 1 0.003659 0.004327 0.004837 0.14% Gravity::get_new_grav_vector() 11 0.003266 0.003674 0.004013 0.12% Gravity::get_old_grav_vector() 10 0.001654 0.00216 0.002701 0.08% Amr::coarseTimeStep() 10 0.001142 0.00199 0.002236 0.07% Castro::finalize_do_advance() 10 0.00124 0.001313 0.001493 0.04% AmrLevel::FillPatch() 41 0.0009339 0.001068 0.001257 0.04% Amr::timeStep() 10 0.0001447 0.0002045 0.0005386 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002868 0.000303 0.0003256 0.01% Castro::do_advance_ctu() 10 0.000156 0.0001765 0.0002056 0.01% Castro::clean_state() 62 0.0001538 0.0001665 0.0001789 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001014 0.0001113 0.000126 0.00% StateDataPhysBCFunct::() 41 0.0001033 0.0001106 0.0001242 0.00% FabArray::ParallelCopy() 41 8.767e-05 9.889e-05 0.0001215 0.00% Castro::do_old_sources() 10 8.458e-05 9.807e-05 0.0001202 0.00% Amr::FinalizeInit() 1 3.827e-06 1.633e-05 0.0001002 0.00% Castro::construct_old_source() 50 5.811e-05 7.265e-05 8.162e-05 0.00% Castro::Castro() 1 4.311e-05 6.254e-05 8.048e-05 0.00% FillPatchSingleLevel 41 6.131e-05 6.887e-05 7.423e-05 0.00% Castro::do_new_sources() 10 6e-05 6.427e-05 7.102e-05 0.00% Castro::advance() 10 4.598e-05 5.398e-05 6.79e-05 0.00% Castro::subcycle_advance_ctu() 10 4.276e-05 5.287e-05 6.659e-05 0.00% Castro::apply_source_to_state() 20 4.158e-05 4.884e-05 6.235e-05 0.00% Castro::construct_old_gravity() 10 3.028e-05 4.235e-05 6.221e-05 0.00% Amr::defBaseLevel() 1 3.596e-05 4.433e-05 5.37e-05 0.00% Castro::construct_new_gravity() 10 2.79e-05 3.472e-05 4.774e-05 0.00% Castro::expand_state() 10 2.107e-05 2.929e-05 4.434e-05 0.00% Castro::check_for_nan() 20 2.506e-05 2.684e-05 3.008e-05 0.00% Castro::post_init() 1 1.618e-05 1.798e-05 2.144e-05 0.00% Castro::post_timestep() 10 1.405e-05 1.71e-05 2.111e-05 0.00% Castro::computeNewDt() 9 8.306e-06 1.036e-05 1.256e-05 0.00% Amr::initialInit() 1 1.638e-06 2.835e-06 7.325e-06 0.00% Amr::InitializeInit() 1 2.522e-06 4.223e-06 7.06e-06 0.00% Castro::computeInitialDt() 2 2.955e-06 3.72e-06 4.56e-06 0.00% Amr::init() 1 1.732e-06 2.113e-06 2.708e-06 0.00% Other 199 0.01038 0.01277 0.01469 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.379 3.38 3.381 100.00% Amr::coarseTimeStep() 10 3.185 3.185 3.185 94.21% Amr::timeStep() 10 3.172 3.173 3.174 93.86% Castro::advance() 10 3.156 3.157 3.157 93.37% Castro::subcycle_advance_ctu() 10 3.076 3.079 3.083 91.19% Castro::do_advance_ctu() 10 3.076 3.079 3.083 91.18% Castro::construct_ctu_hydro_source() 10 2.324 2.328 2.332 68.97% Gravity::make_radial_gravity() 21 0.307 0.3151 0.3219 9.52% AmrLevel::FillPatch() 41 0.1926 0.2097 0.2221 6.57% Gravity::get_new_grav_vector() 11 0.2092 0.2101 0.211 6.24% Castro::construct_old_gravity() 10 0.1882 0.1937 0.1997 5.91% Gravity::get_old_grav_vector() 10 0.1874 0.193 0.1989 5.88% FillPatchIterator::Initialize 41 0.1628 0.1753 0.186 5.50% Castro::construct_new_gravity() 10 0.184 0.1846 0.1855 5.49% Amr::init() 1 0.1816 0.1822 0.1829 5.41% Castro::initialize_do_advance() 10 0.1593 0.1669 0.1709 5.06% Amr::initialInit() 1 0.1666 0.1672 0.1679 4.97% check_for_negative_density() 10 0.04227 0.1057 0.1434 4.24% FillPatchIterator::FillFromLevel0() 41 0.1184 0.1298 0.1405 4.16% FillPatchSingleLevel 41 0.1183 0.1297 0.1404 4.15% Amr::InitializeInit() 1 0.05816 0.0953 0.1372 4.06% Amr::defBaseLevel() 1 0.05816 0.0953 0.1372 4.06% Castro::initData() 1 0.04127 0.0782 0.1194 3.53% Castro::clean_state() 62 0.1142 0.1161 0.1177 3.48% Castro::expand_state() 10 0.104 0.1111 0.1159 3.43% Castro::estTimeStep() 21 0.02272 0.07099 0.1118 3.31% Amr::FinalizeInit() 1 0.02955 0.07188 0.1095 3.24% Castro::do_old_sources() 10 0.09723 0.1033 0.1074 3.18% FabArray::ParallelCopy() 41 0.08198 0.09627 0.1066 3.15% amrex::Copy() 193 0.08127 0.08823 0.09923 2.93% Castro::computeInitialDt() 2 0.002144 0.04461 0.08239 2.44% FabArray::setVal() 143 0.06699 0.07185 0.07786 2.30% Castro::initialize_advance() 10 0.07005 0.07403 0.07687 2.27% Castro::do_new_sources() 10 0.06106 0.06428 0.06935 2.05% Castro::computeTemp() 63 0.06327 0.06483 0.06654 1.97% FabArray::ParallelCopy_finish() 41 0.03824 0.05347 0.06519 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04552 0.04657 0.04824 1.43% Castro::reset_internal_energy(Fab) 1008 0.04523 0.04627 0.04792 1.42% Castro::normalize_species() 62 0.04524 0.04574 0.04696 1.39% FabArray::ParallelCopy_nowait() 41 0.0403 0.0427 0.0439 1.30% StateDataPhysBCFunct::() 41 0.02971 0.03334 0.03639 1.08% StateData::FillBoundary(geom) 41 0.0296 0.03323 0.03628 1.07% Castro::construct_new_source() 50 0.02881 0.03042 0.03265 0.97% Gravity::interpolate_monopole_grav() 21 0.02679 0.02766 0.0292 0.86% Castro::post_init() 1 0.02646 0.02671 0.02692 0.80% Castro::construct_new_gravity_source() 10 0.02276 0.02423 0.02642 0.78% Amr::writePlotFile() 2 0.0233 0.02343 0.0237 0.70% Castro::finalize_do_advance() 10 0.01277 0.01838 0.02257 0.67% Castro::post_timestep() 10 0.0156 0.01594 0.0167 0.49% Castro::apply_source_to_state() 20 0.012 0.01286 0.01382 0.41% FabArray::Saxpy() 20 0.01196 0.01281 0.01376 0.41% FabArray::setDomainBndry() 41 0.008905 0.01098 0.01281 0.38% Castro::check_for_nan() 20 0.01076 0.01155 0.01273 0.38% MultiFab::contains_nan() 20 0.01073 0.01152 0.01271 0.38% VisMF::Write(FabArray) 2 0.009127 0.009669 0.01211 0.36% Castro::Castro() 1 0.01017 0.01082 0.01159 0.34% Castro::construct_old_source() 50 0.009389 0.009727 0.01005 0.30% Castro::construct_old_gravity_source() 10 0.00931 0.009654 0.009967 0.29% Castro::computeNewDt() 9 0.009313 0.009327 0.009344 0.28% Castro::initMFs() 1 0.006489 0.007029 0.007834 0.23% Castro::enforce_min_density() 62 0.005716 0.006181 0.006499 0.19% Other 199 0.02038 0.02401 0.0276 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6743 KiB 6749 KiB 6751 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4547 KiB 4550 KiB 4553 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 211 KiB 229 KiB 242 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2797 KiB 2800 KiB 2801 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 237 KiB 242 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 44 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 73 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized