Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:59 UTC on 2025-06-09. Successfully read inputs file ... Castro git describe: 25.06 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.06-7-gd774002a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.017353657 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.365377656 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.377395885 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.370270961 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.405198944 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.372167471 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.371301147 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.37146365 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.37237767 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.372416216 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.377726094 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012938057 seconds Ending run at 05:19:03 UTC on 2025-06-09. Run time = 3.957565329 Run time without initialization = 3.777530736 Average number of zones advanced per microsecond: 0.694 Average number of zones advanced per microsecond per rank: 0.087 TinyProfiler total time across processes [min...avg...max]: 3.9507 ... 3.9555 ... 3.9576 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3078 2.4940 2.6867 67.89% check_for_negative_density() 10 0.03823 0.2369 0.4244 10.72% Gravity::make_radial_gravity() 21 0.2902 0.3058 0.3247 8.20% amrex::Copy() 193 0.09607 0.1098 0.1238 3.13% Castro::initData() 1 0.03715 0.07093 0.1043 2.63% FabArray::setVal() 143 0.09084 0.09533 0.09948 2.51% Castro::estTimeStep() 21 0.03099 0.06443 0.09639 2.44% FabArray::ParallelCopy_finish() 41 0.052 0.05903 0.06512 1.65% FabArray::ParallelCopy_nowait() 41 0.05708 0.06053 0.06446 1.63% FillPatchIterator::Initialize 41 0.04681 0.05239 0.05803 1.47% Castro::reset_internal_energy(Fab) 1008 0.04833 0.04924 0.05135 1.30% Castro::normalize_species() 62 0.04609 0.04682 0.04763 1.20% StateData::FillBoundary(geom) 41 0.03464 0.03831 0.04256 1.08% Castro::construct_new_gravity_source() 10 0.02869 0.03204 0.03526 0.89% Gravity::interpolate_monopole_grav() 21 0.02633 0.02706 0.0288 0.73% Castro::initialize_do_advance() 10 0.02197 0.02437 0.02611 0.66% FabArray::Saxpy() 20 0.01684 0.01871 0.02068 0.52% Castro::computeTemp() 63 0.01834 0.01925 0.02017 0.51% FabArray::setDomainBndry() 41 0.01628 0.0182 0.01948 0.49% VisMF::Write(FabArray) 2 0.009885 0.01141 0.01647 0.42% Amr::writePlotFile() 2 0.01038 0.01441 0.01591 0.40% MultiFab::contains_nan() 20 0.01254 0.01443 0.01571 0.40% Castro::initialize_advance() 10 0.0144 0.01503 0.01561 0.39% Castro::construct_old_gravity_source() 10 0.01474 0.01531 0.01543 0.39% Castro::initMFs() 1 0.006391 0.00766 0.011 0.28% Castro::construct_new_source() 50 0.007131 0.00793 0.008725 0.22% StateData::define() 4 0.005455 0.00634 0.008417 0.21% main() 1 0.00573 0.007441 0.008256 0.21% Gravity::get_new_grav_vector() 11 0.004334 0.005159 0.005915 0.15% Gravity::get_old_grav_vector() 10 0.002654 0.002908 0.0034 0.09% Amr::coarseTimeStep() 10 0.0009997 0.002031 0.002705 0.07% Castro::finalize_do_advance() 10 0.00124 0.001432 0.001883 0.05% AmrLevel::FillPatch() 41 0.001141 0.001337 0.001494 0.04% Amr::timeStep() 10 0.0001272 0.0001955 0.0003523 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003094 0.0003236 0.0003446 0.01% Castro::do_advance_ctu() 10 0.0001648 0.0002071 0.0002559 0.01% Castro::clean_state() 62 0.0001715 0.0002058 0.0002356 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001229 0.0001397 0.0001591 0.00% StateDataPhysBCFunct::() 41 0.0001097 0.0001247 0.0001566 0.00% Castro::do_old_sources() 10 9.095e-05 0.0001254 0.0001485 0.00% FabArray::ParallelCopy() 41 9.003e-05 0.0001168 0.0001479 0.00% Castro::construct_old_source() 50 7.21e-05 9.17e-05 0.0001058 0.00% FillPatchSingleLevel 41 7.325e-05 8.402e-05 9.702e-05 0.00% Castro::Castro() 1 4.569e-05 6.473e-05 8.946e-05 0.00% Castro::do_new_sources() 10 5.572e-05 7.24e-05 8.263e-05 0.00% Castro::subcycle_advance_ctu() 10 4.818e-05 6.863e-05 8.204e-05 0.00% Castro::advance() 10 4.559e-05 6.037e-05 7.794e-05 0.00% Castro::apply_source_to_state() 20 5.319e-05 6.452e-05 7.309e-05 0.00% Amr::FinalizeInit() 1 3.752e-06 1.22e-05 6.619e-05 0.00% Amr::defBaseLevel() 1 3.47e-05 4.787e-05 5.801e-05 0.00% Castro::construct_old_gravity() 10 3.571e-05 4.515e-05 5.539e-05 0.00% Castro::construct_new_gravity() 10 2.856e-05 3.487e-05 5.152e-05 0.00% Castro::expand_state() 10 2.96e-05 4.015e-05 5.005e-05 0.00% Castro::check_for_nan() 20 2.982e-05 3.211e-05 3.786e-05 0.00% Castro::post_init() 1 1.483e-05 1.777e-05 2.378e-05 0.00% Castro::post_timestep() 10 1.609e-05 1.962e-05 2.37e-05 0.00% Amr::InitializeInit() 1 2.35e-06 5.285e-06 2.205e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.674e-06 1.314e-05 2.102e-05 0.00% Castro::computeNewDt() 9 9.342e-06 1.077e-05 1.246e-05 0.00% Amr::initialInit() 1 1.324e-06 3.025e-06 1.052e-05 0.00% Amr::init() 1 1.577e-06 2.351e-06 5.591e-06 0.00% Castro::computeInitialDt() 2 3.089e-06 3.649e-06 4.347e-06 0.00% Other 256 0.01094 0.01743 0.02075 0.52% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.951 3.956 3.958 100.00% Amr::coarseTimeStep() 10 3.756 3.756 3.756 94.92% Amr::timeStep() 10 3.744 3.745 3.746 94.65% Castro::advance() 10 3.728 3.729 3.73 94.24% Castro::subcycle_advance_ctu() 10 3.628 3.63 3.632 91.76% Castro::do_advance_ctu() 10 3.628 3.63 3.632 91.76% Castro::construct_ctu_hydro_source() 10 2.749 2.754 2.76 69.73% check_for_negative_density() 10 0.03823 0.2369 0.4244 10.72% Gravity::make_radial_gravity() 21 0.3131 0.3278 0.346 8.74% AmrLevel::FillPatch() 41 0.2589 0.2759 0.2909 7.35% FillPatchIterator::Initialize 41 0.2216 0.229 0.2367 5.98% Castro::initialize_do_advance() 10 0.2091 0.2235 0.2347 5.93% Gravity::get_new_grav_vector() 11 0.2232 0.2248 0.2255 5.70% Castro::construct_old_gravity() 10 0.1904 0.2017 0.216 5.46% Gravity::get_old_grav_vector() 10 0.1895 0.2008 0.2153 5.44% Castro::construct_new_gravity() 10 0.2002 0.2021 0.2029 5.13% Amr::init() 1 0.1748 0.1784 0.1797 4.54% Castro::expand_state() 10 0.1406 0.1554 0.1671 4.22% FillPatchIterator::FillFromLevel0() 41 0.1531 0.1585 0.1644 4.15% FillPatchSingleLevel 41 0.153 0.1583 0.1643 4.15% Amr::initialInit() 1 0.1573 0.1612 0.1627 4.11% Castro::do_old_sources() 10 0.1312 0.1331 0.1354 3.42% Amr::InitializeInit() 1 0.06103 0.09624 0.1315 3.32% Amr::defBaseLevel() 1 0.06103 0.09623 0.1314 3.32% FabArray::ParallelCopy() 41 0.1157 0.1198 0.1249 3.15% amrex::Copy() 193 0.09607 0.1098 0.1238 3.13% Castro::clean_state() 62 0.1212 0.1221 0.1235 3.12% Castro::initData() 1 0.04084 0.07462 0.1079 2.73% Amr::FinalizeInit() 1 0.02647 0.06501 0.1011 2.55% FabArray::setVal() 143 0.09084 0.09533 0.09948 2.51% Castro::estTimeStep() 21 0.03099 0.06443 0.09639 2.44% Castro::initialize_advance() 10 0.09258 0.0945 0.09613 2.43% Castro::do_new_sources() 10 0.07423 0.07868 0.08321 2.10% Castro::computeInitialDt() 2 0.002122 0.04064 0.07662 1.94% Castro::computeTemp() 63 0.06737 0.06881 0.07183 1.82% FabArray::ParallelCopy_finish() 41 0.052 0.05903 0.06512 1.65% FabArray::ParallelCopy_nowait() 41 0.05721 0.06065 0.06456 1.63% Castro::reset_internal_energy(MultiFab) 63 0.04865 0.04956 0.05167 1.31% Castro::reset_internal_energy(Fab) 1008 0.04833 0.04924 0.05135 1.30% Castro::normalize_species() 62 0.04609 0.04682 0.04763 1.20% Castro::construct_new_source() 50 0.03597 0.03997 0.04379 1.11% StateDataPhysBCFunct::() 41 0.03479 0.03844 0.04268 1.08% StateData::FillBoundary(geom) 41 0.03464 0.03831 0.04256 1.08% Castro::construct_new_gravity_source() 10 0.02869 0.03204 0.03526 0.89% Amr::writePlotFile() 2 0.03005 0.03015 0.03054 0.77% Gravity::interpolate_monopole_grav() 21 0.02633 0.02706 0.0288 0.73% Castro::post_init() 1 0.02363 0.02386 0.02403 0.61% Castro::finalize_do_advance() 10 0.01155 0.0168 0.02215 0.56% Castro::apply_source_to_state() 20 0.0169 0.01877 0.02075 0.52% FabArray::Saxpy() 20 0.01684 0.01871 0.02068 0.52% FabArray::setDomainBndry() 41 0.01628 0.0182 0.01948 0.49% VisMF::Write(FabArray) 2 0.009885 0.01141 0.01647 0.42% Castro::post_timestep() 10 0.01541 0.01568 0.01598 0.40% Castro::check_for_nan() 20 0.01258 0.01446 0.01574 0.40% MultiFab::contains_nan() 20 0.01254 0.01443 0.01571 0.40% Castro::construct_old_source() 50 0.01481 0.0154 0.01554 0.39% Castro::construct_old_gravity_source() 10 0.01474 0.01531 0.01543 0.39% Castro::Castro() 1 0.0101 0.01156 0.01509 0.38% Castro::initMFs() 1 0.006391 0.00766 0.011 0.28% Castro::computeNewDt() 9 0.008416 0.008434 0.008452 0.21% AmrLevel::AmrLevel(dm) 1 0.005466 0.006354 0.008436 0.21% StateData::define() 4 0.005455 0.00634 0.008417 0.21% Other 256 0.01649 0.02728 0.03261 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 30 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8649 KiB 8659 KiB 8663 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6808 KiB 6810 KiB 6816 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7132 KiB 7137 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4581 KiB 4583 KiB 4589 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 245 KiB 265 KiB 282 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 18 KiB 23 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2826 KiB 2827 KiB 2829 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 201 KiB 211 KiB 223 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 45 KiB 46 KiB 47 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2026 KiB 2027 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 72 KiB 73 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 61 KiB 65 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized