Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:35 UTC on 2025-06-10. Successfully read inputs file ... Castro git describe: 25.06 AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.06-9-g325589cf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014261326 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340847013 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.32016559 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313692153 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.309773052 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.346944083 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.31274857 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298403914 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.319290565 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300169431 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.301034807 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00780728 seconds Ending run at 05:19:38 UTC on 2025-06-10. Run time = 3.340536364 Run time without initialization = 3.17683928 Average number of zones advanced per microsecond: 0.825 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3395 ... 3.3403 ... 3.3408 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1464 2.2232 2.2805 68.26% Gravity::make_radial_gravity() 21 0.287 0.2939 0.3156 9.45% check_for_negative_density() 10 0.0211 0.07709 0.1568 4.69% Castro::initData() 1 0.03732 0.07043 0.1014 3.04% Castro::estTimeStep() 21 0.02363 0.05865 0.09572 2.87% FabArray::ParallelCopy_finish() 41 0.03985 0.04894 0.09195 2.75% amrex::Copy() 193 0.06255 0.08238 0.09142 2.74% FabArray::setVal() 143 0.06682 0.07439 0.07844 2.35% Castro::normalize_species() 62 0.04649 0.04887 0.05118 1.53% Castro::reset_internal_energy(Fab) 1008 0.04486 0.04633 0.04739 1.42% FabArray::ParallelCopy_nowait() 41 0.03436 0.04157 0.04431 1.33% StateData::FillBoundary(geom) 41 0.02878 0.03224 0.0354 1.06% FillPatchIterator::Initialize 41 0.02619 0.03191 0.03492 1.05% Castro::construct_new_gravity_source() 10 0.02344 0.02506 0.02726 0.82% Gravity::interpolate_monopole_grav() 21 0.02663 0.02689 0.02706 0.81% Castro::computeTemp() 63 0.01802 0.01846 0.01893 0.57% Castro::initialize_do_advance() 10 0.01063 0.01643 0.01797 0.54% FabArray::Saxpy() 20 0.01065 0.01312 0.01468 0.44% VisMF::Write(FabArray) 2 0.008985 0.009714 0.01378 0.41% Castro::initialize_advance() 10 0.005474 0.01087 0.0135 0.40% MultiFab::contains_nan() 20 0.01032 0.01129 0.01262 0.38% FabArray::setDomainBndry() 41 0.006879 0.009693 0.01125 0.34% Castro::construct_old_gravity_source() 10 0.006694 0.01008 0.0109 0.33% Amr::writePlotFile() 2 0.00695 0.009401 0.0099 0.30% Castro::construct_new_source() 50 0.005366 0.006385 0.006822 0.20% Castro::initMFs() 1 0.00638 0.006512 0.006696 0.20% main() 1 0.00424 0.004949 0.00529 0.16% Amr::coarseTimeStep() 10 0.002368 0.003437 0.004472 0.13% Gravity::get_new_grav_vector() 11 0.002635 0.003361 0.003691 0.11% Gravity::get_old_grav_vector() 10 0.001462 0.002052 0.002511 0.08% Castro::finalize_do_advance() 10 0.0005225 0.001071 0.001192 0.04% AmrLevel::FillPatch() 41 0.0007802 0.0008762 0.000954 0.03% Amr::timeStep() 10 0.0001502 0.0002075 0.0004265 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000285 0.0003052 0.0003249 0.01% Castro::clean_state() 62 0.0001493 0.0001716 0.0001948 0.01% Castro::do_advance_ctu() 10 0.0001539 0.0001749 0.0001915 0.01% FillPatchIterator::FillFromLevel0() 41 0.000105 0.0001115 0.0001293 0.00% Castro::do_old_sources() 10 8.368e-05 0.0001025 0.0001169 0.00% StateDataPhysBCFunct::() 41 9.099e-05 0.0001018 0.0001149 0.00% Castro::Castro() 1 7.51e-05 8.827e-05 0.000107 0.00% FabArray::ParallelCopy() 41 8.364e-05 9.202e-05 9.882e-05 0.00% Castro::do_new_sources() 10 5.699e-05 6.903e-05 8.86e-05 0.00% Castro::construct_old_source() 50 4.839e-05 7.061e-05 8.535e-05 0.00% Castro::advance() 10 4.149e-05 6.329e-05 8.486e-05 0.00% Castro::subcycle_advance_ctu() 10 4.526e-05 5.679e-05 8.132e-05 0.00% FillPatchSingleLevel 41 6.037e-05 6.661e-05 8.108e-05 0.00% Castro::apply_source_to_state() 20 4.572e-05 5.391e-05 7.115e-05 0.00% Amr::FinalizeInit() 1 3.862e-06 1.249e-05 6.812e-05 0.00% Amr::defBaseLevel() 1 3.834e-05 4.21e-05 5.14e-05 0.00% Castro::construct_new_gravity() 10 2.944e-05 3.366e-05 4.21e-05 0.00% Castro::construct_old_gravity() 10 3.365e-05 3.787e-05 4.053e-05 0.00% Castro::check_for_nan() 20 2.473e-05 2.876e-05 3.515e-05 0.00% Castro::expand_state() 10 2.256e-05 2.798e-05 3.089e-05 0.00% Castro::post_init() 1 1.491e-05 1.815e-05 2.346e-05 0.00% Castro::post_timestep() 10 1.392e-05 1.799e-05 2.176e-05 0.00% Castro::computeNewDt() 9 9.042e-06 9.861e-06 1.095e-05 0.00% Amr::InitializeInit() 1 2.38e-06 3.082e-06 5.688e-06 0.00% Amr::init() 1 1.533e-06 2.421e-06 4.869e-06 0.00% Castro::computeInitialDt() 2 2.751e-06 3.76e-06 4.483e-06 0.00% Amr::initialInit() 1 1.465e-06 1.81e-06 2.218e-06 0.00% Other 261 0.01489 0.01873 0.02032 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.339 3.34 3.341 100.00% Amr::coarseTimeStep() 10 3.164 3.164 3.164 94.70% Amr::timeStep() 10 3.149 3.15 3.151 94.33% Castro::advance() 10 3.133 3.134 3.134 93.81% Castro::subcycle_advance_ctu() 10 3.051 3.054 3.066 91.78% Castro::do_advance_ctu() 10 3.051 3.054 3.066 91.78% Castro::construct_ctu_hydro_source() 10 2.318 2.322 2.325 69.60% Gravity::make_radial_gravity() 21 0.304 0.3104 0.3275 9.80% AmrLevel::FillPatch() 41 0.1834 0.1987 0.213 6.38% Gravity::get_new_grav_vector() 11 0.203 0.2048 0.2064 6.18% Castro::construct_old_gravity() 10 0.1815 0.1869 0.2014 6.03% Gravity::get_old_grav_vector() 10 0.1808 0.1863 0.2008 6.01% FillPatchIterator::Initialize 41 0.1508 0.1648 0.1886 5.65% Castro::construct_new_gravity() 10 0.1813 0.1825 0.1837 5.50% Castro::initialize_do_advance() 10 0.1604 0.1641 0.1682 5.04% Amr::init() 1 0.1624 0.1634 0.1636 4.90% check_for_negative_density() 10 0.0211 0.07709 0.1568 4.69% FillPatchIterator::FillFromLevel0() 41 0.1143 0.1232 0.1556 4.66% FillPatchSingleLevel 41 0.1142 0.1231 0.1554 4.65% Amr::initialInit() 1 0.1485 0.1494 0.1496 4.48% FabArray::ParallelCopy() 41 0.08316 0.0907 0.1265 3.79% Castro::clean_state() 62 0.1155 0.1194 0.1234 3.69% Amr::InitializeInit() 1 0.05944 0.09232 0.1233 3.69% Amr::defBaseLevel() 1 0.05944 0.09232 0.1233 3.69% Castro::expand_state() 10 0.104 0.1106 0.1165 3.49% Castro::initData() 1 0.04135 0.07441 0.1054 3.15% Castro::do_old_sources() 10 0.09241 0.09774 0.1016 3.04% Castro::estTimeStep() 21 0.02363 0.05865 0.09572 2.87% FabArray::ParallelCopy_finish() 41 0.03985 0.04894 0.09195 2.75% amrex::Copy() 193 0.06255 0.08238 0.09142 2.74% Amr::FinalizeInit() 1 0.0262 0.05704 0.09013 2.70% FabArray::setVal() 143 0.06682 0.07439 0.07844 2.35% Castro::initialize_advance() 10 0.06261 0.07552 0.07813 2.34% Castro::do_new_sources() 10 0.0607 0.066 0.07062 2.11% Castro::computeTemp() 63 0.06317 0.0651 0.06664 1.99% Castro::computeInitialDt() 2 0.002136 0.03303 0.06606 1.98% Castro::normalize_species() 62 0.04649 0.04887 0.05118 1.53% Castro::reset_internal_energy(MultiFab) 63 0.04515 0.04664 0.0477 1.43% Castro::reset_internal_energy(Fab) 1008 0.04486 0.04633 0.04739 1.42% FabArray::ParallelCopy_nowait() 41 0.03446 0.04166 0.04439 1.33% StateDataPhysBCFunct::() 41 0.02888 0.03234 0.0355 1.06% StateData::FillBoundary(geom) 41 0.02878 0.03224 0.0354 1.06% Castro::construct_new_source() 50 0.02881 0.03145 0.03373 1.01% Castro::construct_new_gravity_source() 10 0.02344 0.02506 0.02726 0.82% Gravity::interpolate_monopole_grav() 21 0.02663 0.02689 0.02706 0.81% Castro::post_init() 1 0.02309 0.02347 0.02361 0.71% Castro::finalize_do_advance() 10 0.01364 0.01774 0.02278 0.68% Amr::writePlotFile() 2 0.02182 0.02194 0.02232 0.67% Castro::post_timestep() 10 0.01569 0.01657 0.01765 0.53% Castro::apply_source_to_state() 20 0.0107 0.01317 0.01474 0.44% FabArray::Saxpy() 20 0.01065 0.01312 0.01468 0.44% VisMF::Write(FabArray) 2 0.008985 0.009714 0.01378 0.41% Castro::check_for_nan() 20 0.01034 0.01132 0.01265 0.38% MultiFab::contains_nan() 20 0.01032 0.01129 0.01262 0.38% Castro::Castro() 1 0.01111 0.01126 0.01165 0.35% FabArray::setDomainBndry() 41 0.006879 0.009693 0.01125 0.34% Castro::construct_old_source() 50 0.006742 0.01015 0.01098 0.33% Castro::construct_old_gravity_source() 10 0.006694 0.01008 0.0109 0.33% Castro::computeNewDt() 9 0.008947 0.008965 0.008981 0.27% Castro::initMFs() 1 0.00638 0.006512 0.006696 0.20% Other 261 0.02567 0.03089 0.0333 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 35 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8654 KiB 8667 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6779 KiB 6785 KiB 6788 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7128 KiB 7138 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4563 KiB 4567 KiB 4579 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 224 KiB 239 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2809 KiB 2813 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 236 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 41 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized