Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:19:52 UTC on 2025-06-11. Successfully read inputs file ... Castro git describe: 25.06-1-g14dc73e8e AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.06-9-g325589cf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020625393 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.424712558 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.382032018 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.372825704 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.394295554 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371583418 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.370610202 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.37239097 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.372986301 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.37300602 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.377323046 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012012214 seconds Ending run at 05:19:56 UTC on 2025-06-11. Run time = 4.01879203 Run time without initialization = 3.831860213 Average number of zones advanced per microsecond: 0.684 Average number of zones advanced per microsecond per rank: 0.086 TinyProfiler total time across processes [min...avg...max]: 4.0178 ... 4.0183 ... 4.0188 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3169 2.5352 2.7289 67.90% check_for_negative_density() 10 0.01508 0.2134 0.437 10.87% Gravity::make_radial_gravity() 21 0.2958 0.3143 0.3355 8.35% amrex::Copy() 193 0.09895 0.1174 0.1308 3.25% FabArray::setVal() 143 0.09542 0.1024 0.1073 2.67% Castro::initData() 1 0.04 0.07445 0.1043 2.59% Castro::estTimeStep() 21 0.02516 0.05751 0.09646 2.40% FabArray::ParallelCopy_finish() 41 0.05492 0.06086 0.0713 1.77% FabArray::ParallelCopy_nowait() 41 0.05863 0.06432 0.06952 1.73% FillPatchIterator::Initialize 41 0.05073 0.05685 0.06275 1.56% Castro::reset_internal_energy(Fab) 1008 0.05012 0.05247 0.05489 1.37% Castro::normalize_species() 62 0.04663 0.04739 0.04837 1.20% StateData::FillBoundary(geom) 41 0.03648 0.04061 0.04732 1.18% Castro::construct_new_gravity_source() 10 0.02873 0.03234 0.0352 0.88% Castro::initialize_do_advance() 10 0.02356 0.02589 0.02916 0.73% Gravity::interpolate_monopole_grav() 21 0.02657 0.02715 0.0277 0.69% FabArray::setDomainBndry() 41 0.01641 0.01926 0.02192 0.55% FabArray::Saxpy() 20 0.01794 0.01937 0.02089 0.52% Castro::computeTemp() 63 0.01911 0.02017 0.02087 0.52% VisMF::Write(FabArray) 2 0.01214 0.01377 0.01718 0.43% Castro::initialize_advance() 10 0.0159 0.01635 0.01671 0.42% Castro::construct_old_gravity_source() 10 0.01458 0.01581 0.0162 0.40% Amr::writePlotFile() 2 0.01026 0.0136 0.01514 0.38% MultiFab::contains_nan() 20 0.01163 0.01317 0.01421 0.35% Castro::initMFs() 1 0.00873 0.009646 0.01165 0.29% Castro::construct_new_source() 50 0.006947 0.00793 0.008567 0.21% main() 1 0.007165 0.007355 0.00759 0.19% Gravity::get_new_grav_vector() 11 0.00413 0.00523 0.00609 0.15% Gravity::get_old_grav_vector() 10 0.002533 0.002867 0.003917 0.10% Amr::coarseTimeStep() 10 0.001166 0.001905 0.002769 0.07% AmrLevel::FillPatch() 41 0.00109 0.001363 0.001789 0.04% Castro::finalize_do_advance() 10 0.00124 0.001329 0.001384 0.03% Amr::timeStep() 10 0.0001405 0.0002185 0.0005621 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003152 0.0003441 0.0003675 0.01% Castro::do_advance_ctu() 10 0.0001754 0.0002001 0.0002312 0.01% Castro::clean_state() 62 0.000172 0.0001984 0.0002218 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001314 0.0001409 0.0001563 0.00% Castro::do_old_sources() 10 0.0001114 0.0001316 0.0001553 0.00% StateDataPhysBCFunct::() 41 0.0001204 0.0001359 0.0001522 0.00% Castro::Castro() 1 6.224e-05 9.898e-05 0.0001489 0.00% FabArray::ParallelCopy() 41 0.0001118 0.0001199 0.0001317 0.00% Castro::construct_old_source() 50 7.793e-05 9.601e-05 0.0001112 0.00% FillPatchSingleLevel 41 7.324e-05 8.306e-05 9.491e-05 0.00% Castro::subcycle_advance_ctu() 10 5.635e-05 7.069e-05 8.785e-05 0.00% Castro::do_new_sources() 10 6.152e-05 7.321e-05 8.524e-05 0.00% Amr::FinalizeInit() 1 4.332e-06 1.416e-05 7.568e-05 0.00% Castro::apply_source_to_state() 20 5.678e-05 6.724e-05 7.546e-05 0.00% Castro::advance() 10 4.792e-05 5.724e-05 7.041e-05 0.00% Amr::defBaseLevel() 1 4.31e-05 5.041e-05 6.452e-05 0.00% Castro::construct_old_gravity() 10 3.578e-05 4.397e-05 5.212e-05 0.00% Castro::construct_new_gravity() 10 3.064e-05 3.906e-05 5.056e-05 0.00% Castro::expand_state() 10 2.957e-05 3.848e-05 4.989e-05 0.00% Castro::check_for_nan() 20 2.545e-05 3.141e-05 3.796e-05 0.00% Castro::post_timestep() 10 1.614e-05 1.913e-05 2.635e-05 0.00% Castro::post_init() 1 1.484e-05 1.776e-05 2.058e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.11e-06 9.559e-06 1.333e-05 0.00% Amr::initialInit() 1 1.65e-06 4.302e-06 1.277e-05 0.00% Castro::computeNewDt() 9 1.055e-05 1.127e-05 1.157e-05 0.00% Amr::InitializeInit() 1 2.638e-06 3.329e-06 5.535e-06 0.00% Castro::computeInitialDt() 2 3.988e-06 4.534e-06 5.135e-06 0.00% Amr::init() 1 1.903e-06 2.411e-06 3.556e-06 0.00% Other 260 0.02115 0.0243 0.02696 0.67% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.018 4.018 4.019 100.00% Amr::coarseTimeStep() 10 3.812 3.812 3.812 94.86% Amr::timeStep() 10 3.799 3.8 3.801 94.58% Castro::advance() 10 3.783 3.784 3.784 94.16% Castro::subcycle_advance_ctu() 10 3.674 3.677 3.683 91.65% Castro::do_advance_ctu() 10 3.674 3.677 3.683 91.65% Castro::construct_ctu_hydro_source() 10 2.766 2.771 2.777 69.09% check_for_negative_density() 10 0.01508 0.2134 0.437 10.87% Gravity::make_radial_gravity() 21 0.3212 0.3388 0.3605 8.97% AmrLevel::FillPatch() 41 0.2726 0.2912 0.3112 7.74% FillPatchIterator::Initialize 41 0.2297 0.2425 0.2551 6.35% Castro::initialize_do_advance() 10 0.2199 0.234 0.248 6.17% Gravity::get_new_grav_vector() 11 0.2332 0.2346 0.2356 5.86% Castro::construct_old_gravity() 10 0.1939 0.2078 0.2259 5.62% Gravity::get_old_grav_vector() 10 0.193 0.207 0.2251 5.60% Castro::construct_new_gravity() 10 0.2047 0.2061 0.2074 5.16% Amr::init() 1 0.1858 0.1863 0.1868 4.65% Castro::expand_state() 10 0.1479 0.1634 0.1795 4.47% FillPatchIterator::FillFromLevel0() 41 0.1604 0.1664 0.1716 4.27% FillPatchSingleLevel 41 0.1602 0.1663 0.1715 4.27% Amr::initialInit() 1 0.165 0.1655 0.1662 4.14% Castro::do_old_sources() 10 0.1375 0.1395 0.1414 3.52% Amr::InitializeInit() 1 0.06831 0.1036 0.1335 3.32% Amr::defBaseLevel() 1 0.0683 0.1036 0.1335 3.32% amrex::Copy() 193 0.09895 0.1174 0.1308 3.25% Castro::clean_state() 62 0.1236 0.1267 0.1307 3.25% FabArray::ParallelCopy() 41 0.1231 0.1254 0.1302 3.24% Castro::initData() 1 0.04516 0.07918 0.1095 2.72% FabArray::setVal() 143 0.09542 0.1024 0.1073 2.67% Castro::initialize_advance() 10 0.09567 0.1016 0.1046 2.60% Amr::FinalizeInit() 1 0.0323 0.06191 0.09691 2.41% Castro::estTimeStep() 21 0.02516 0.05751 0.09646 2.40% Castro::do_new_sources() 10 0.07277 0.07931 0.08437 2.10% Castro::computeTemp() 63 0.06977 0.07298 0.07613 1.89% FabArray::ParallelCopy_finish() 41 0.05492 0.06086 0.0713 1.77% FabArray::ParallelCopy_nowait() 41 0.05876 0.06445 0.06963 1.73% Castro::computeInitialDt() 2 0.002298 0.03168 0.06674 1.66% Castro::reset_internal_energy(MultiFab) 63 0.05044 0.05281 0.05526 1.38% Castro::reset_internal_energy(Fab) 1008 0.05012 0.05247 0.05489 1.37% Castro::normalize_species() 62 0.04663 0.04739 0.04837 1.20% StateDataPhysBCFunct::() 41 0.03663 0.04075 0.04746 1.18% StateData::FillBoundary(geom) 41 0.03648 0.04061 0.04732 1.18% Castro::construct_new_source() 50 0.03568 0.04027 0.04377 1.09% Castro::construct_new_gravity_source() 10 0.02873 0.03234 0.0352 0.88% Amr::writePlotFile() 2 0.0327 0.03284 0.03306 0.82% Castro::post_init() 1 0.02947 0.0297 0.02996 0.75% Gravity::interpolate_monopole_grav() 21 0.02657 0.02715 0.0277 0.69% Castro::finalize_do_advance() 10 0.01193 0.01819 0.02611 0.65% FabArray::setDomainBndry() 41 0.01641 0.01926 0.02192 0.55% Castro::apply_source_to_state() 20 0.01799 0.01944 0.02097 0.52% FabArray::Saxpy() 20 0.01794 0.01937 0.02089 0.52% Castro::Castro() 1 0.01462 0.01602 0.01761 0.44% VisMF::Write(FabArray) 2 0.01214 0.01377 0.01718 0.43% Castro::post_timestep() 10 0.01585 0.01621 0.01662 0.41% Castro::construct_old_source() 50 0.01469 0.01591 0.01628 0.41% Castro::construct_old_gravity_source() 10 0.01458 0.01581 0.0162 0.40% Castro::check_for_nan() 20 0.01166 0.0132 0.01425 0.35% MultiFab::contains_nan() 20 0.01163 0.01317 0.01421 0.35% Castro::initMFs() 1 0.00873 0.009646 0.01165 0.29% Castro::computeNewDt() 9 0.008969 0.008987 0.00901 0.22% AmrLevel::AmrLevel(dm) 1 0.007514 0.007859 0.008522 0.21% Other 260 0.02698 0.03126 0.03501 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 30 B 33 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8663 KiB 8665 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6794 KiB 6798 KiB 6800 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4569 KiB 4572 KiB 4576 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 254 KiB 275 KiB 298 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 20 KiB 21 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2821 KiB 2824 KiB 2825 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 203 KiB 214 KiB 228 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 46 KiB 47 KiB 48 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 74 KiB 75 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 61 KiB 66 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized