Initializing AMReX (25.03-15-g546cc5e16431-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-15-g546cc5e16431-dirty) initialized Starting run at 05:18:53 UTC on 2025-06-12. Successfully read inputs file ... Castro git describe: 25.06-1-g14dc73e8e AMReX git describe: 25.03-15-g546cc5e16-dirty Microphysics git describe: 25.06-9-g325589cf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013883952 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.338537081 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.333585775 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315174836 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314214473 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.349738887 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307022268 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295905332 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299629553 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298359503 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299875727 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007402506 seconds Ending run at 05:18:56 UTC on 2025-06-12. Run time = 3.341621829 Run time without initialization = 3.164012193 Average number of zones advanced per microsecond: 0.829 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3402 ... 3.3412 ... 3.3417 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1930 2.2184 2.2498 67.32% Gravity::make_radial_gravity() 21 0.2847 0.2914 0.3071 9.19% Castro::initData() 1 0.03755 0.07185 0.1137 3.40% check_for_negative_density() 10 0.05111 0.08693 0.1111 3.33% Castro::estTimeStep() 21 0.03208 0.07104 0.1081 3.24% amrex::Copy() 193 0.06338 0.07975 0.08926 2.67% FabArray::ParallelCopy_finish() 41 0.03882 0.04801 0.08657 2.59% FabArray::setVal() 143 0.05304 0.06731 0.0725 2.17% Castro::normalize_species() 62 0.04543 0.04692 0.0507 1.52% Castro::reset_internal_energy(Fab) 1008 0.04232 0.04673 0.04878 1.46% FabArray::ParallelCopy_nowait() 41 0.03608 0.04123 0.04345 1.30% FillPatchIterator::Initialize 41 0.02811 0.03262 0.03574 1.07% StateData::FillBoundary(geom) 41 0.0303 0.03214 0.0353 1.06% Gravity::interpolate_monopole_grav() 21 0.02647 0.02679 0.02713 0.81% Castro::construct_new_gravity_source() 10 0.023 0.0243 0.02586 0.77% Castro::computeTemp() 63 0.01713 0.0185 0.01905 0.57% Castro::initialize_do_advance() 10 0.0119 0.01659 0.01801 0.54% FabArray::Saxpy() 20 0.01019 0.01256 0.01362 0.41% Castro::initialize_advance() 10 0.005244 0.01079 0.01331 0.40% MultiFab::contains_nan() 20 0.0104 0.01128 0.01226 0.37% Amr::writePlotFile() 2 0.00724 0.009773 0.01195 0.36% FabArray::setDomainBndry() 41 0.007503 0.01011 0.01171 0.35% VisMF::Write(FabArray) 2 0.008425 0.009248 0.0115 0.34% Castro::construct_old_gravity_source() 10 0.006952 0.00977 0.01051 0.31% Castro::initMFs() 1 0.006369 0.006937 0.008533 0.26% Castro::construct_new_source() 50 0.005786 0.006254 0.006918 0.21% main() 1 0.003519 0.003804 0.00395 0.12% Gravity::get_new_grav_vector() 11 0.002708 0.003386 0.003879 0.12% Amr::coarseTimeStep() 10 0.001121 0.002272 0.003353 0.10% Gravity::get_old_grav_vector() 10 0.001752 0.002146 0.002582 0.08% Castro::finalize_do_advance() 10 0.0004833 0.001131 0.001271 0.04% AmrLevel::FillPatch() 41 0.0007236 0.0009134 0.001078 0.03% Amr::timeStep() 10 0.0001303 0.0001969 0.0004728 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002857 0.0003011 0.0003243 0.01% Castro::do_advance_ctu() 10 0.0001278 0.000161 0.00018 0.01% Castro::clean_state() 62 0.0001525 0.0001661 0.0001772 0.01% StateDataPhysBCFunct::() 41 8.667e-05 0.0001006 0.0001144 0.00% Castro::do_old_sources() 10 7.401e-05 9.646e-05 0.000109 0.00% FillPatchIterator::FillFromLevel0() 41 8.953e-05 0.0001006 0.0001045 0.00% FabArray::ParallelCopy() 41 8.053e-05 9.172e-05 0.0001028 0.00% Castro::Castro() 1 4.891e-05 7.255e-05 9.834e-05 0.00% Castro::do_new_sources() 10 5.563e-05 6.387e-05 8.148e-05 0.00% Castro::construct_old_source() 50 4.035e-05 6.763e-05 7.518e-05 0.00% FillPatchSingleLevel 41 6.076e-05 6.59e-05 7.464e-05 0.00% Amr::FinalizeInit() 1 3.688e-06 1.261e-05 6.861e-05 0.00% Castro::subcycle_advance_ctu() 10 4.155e-05 5.03e-05 5.914e-05 0.00% Castro::apply_source_to_state() 20 3.365e-05 4.688e-05 5.906e-05 0.00% Amr::defBaseLevel() 1 3.801e-05 4.411e-05 5.629e-05 0.00% Castro::construct_old_gravity() 10 3.071e-05 3.786e-05 5.527e-05 0.00% Castro::advance() 10 3.907e-05 4.678e-05 5.225e-05 0.00% Castro::construct_new_gravity() 10 2.765e-05 3.107e-05 3.881e-05 0.00% Castro::check_for_nan() 20 2.564e-05 2.892e-05 3.875e-05 0.00% Castro::expand_state() 10 2.06e-05 2.664e-05 3.198e-05 0.00% Castro::post_timestep() 10 1.3e-05 1.633e-05 2.319e-05 0.00% Castro::post_init() 1 1.376e-05 1.635e-05 1.933e-05 0.00% Castro::computeNewDt() 9 8.518e-06 9.447e-06 1.104e-05 0.00% Amr::initialInit() 1 1.34e-06 3.532e-06 9.213e-06 0.00% Amr::InitializeInit() 1 2.522e-06 3.289e-06 5.164e-06 0.00% Castro::computeInitialDt() 2 3.118e-06 3.697e-06 4.542e-06 0.00% Amr::init() 1 1.529e-06 2.182e-06 3.013e-06 0.00% Other 261 0.01563 0.01843 0.02056 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.34 3.341 3.342 100.00% Amr::coarseTimeStep() 10 3.153 3.153 3.153 94.35% Amr::timeStep() 10 3.14 3.141 3.142 94.02% Castro::advance() 10 3.124 3.124 3.125 93.50% Castro::subcycle_advance_ctu() 10 3.048 3.051 3.068 91.80% Castro::do_advance_ctu() 10 3.048 3.051 3.068 91.79% Castro::construct_ctu_hydro_source() 10 2.323 2.327 2.331 69.74% Gravity::make_radial_gravity() 21 0.3022 0.308 0.3196 9.57% AmrLevel::FillPatch() 41 0.183 0.1973 0.216 6.46% Gravity::get_new_grav_vector() 11 0.2033 0.2053 0.2066 6.18% Castro::construct_old_gravity() 10 0.1776 0.1835 0.1931 5.78% Gravity::get_old_grav_vector() 10 0.1769 0.1828 0.1924 5.76% FillPatchIterator::Initialize 41 0.1514 0.1646 0.1908 5.71% Castro::construct_new_gravity() 10 0.1813 0.1825 0.1833 5.48% Amr::init() 1 0.1762 0.1769 0.1773 5.31% Castro::initialize_do_advance() 10 0.1591 0.164 0.1713 5.13% Amr::initialInit() 1 0.1616 0.1627 0.1632 4.88% FillPatchIterator::FillFromLevel0() 41 0.1131 0.1218 0.1552 4.64% FillPatchSingleLevel 41 0.113 0.1217 0.1551 4.64% Amr::InitializeInit() 1 0.05841 0.09315 0.1354 4.05% Amr::defBaseLevel() 1 0.05841 0.09315 0.1354 4.05% Castro::clean_state() 62 0.1119 0.1177 0.1243 3.72% Castro::expand_state() 10 0.104 0.1104 0.1233 3.69% FabArray::ParallelCopy() 41 0.08068 0.08943 0.1228 3.68% Castro::initData() 1 0.04129 0.07579 0.1173 3.51% check_for_negative_density() 10 0.05111 0.08693 0.1111 3.33% Castro::estTimeStep() 21 0.03208 0.07104 0.1081 3.24% Amr::FinalizeInit() 1 0.02615 0.06949 0.1035 3.10% Castro::do_old_sources() 10 0.08942 0.09544 0.09938 2.97% amrex::Copy() 193 0.06338 0.07975 0.08926 2.67% FabArray::ParallelCopy_finish() 41 0.03882 0.04801 0.08657 2.59% Castro::computeInitialDt() 2 0.00207 0.045 0.07913 2.37% Castro::initialize_advance() 10 0.05279 0.06991 0.07341 2.20% FabArray::setVal() 143 0.05304 0.06731 0.0725 2.17% Castro::do_new_sources() 10 0.06035 0.06428 0.07093 2.12% Castro::computeTemp() 63 0.05976 0.06553 0.06805 2.04% Castro::normalize_species() 62 0.04543 0.04692 0.0507 1.52% Castro::reset_internal_energy(MultiFab) 63 0.04262 0.04703 0.04908 1.47% Castro::reset_internal_energy(Fab) 1008 0.04232 0.04673 0.04878 1.46% FabArray::ParallelCopy_nowait() 41 0.03617 0.04132 0.04355 1.30% StateDataPhysBCFunct::() 41 0.0304 0.03224 0.03541 1.06% StateData::FillBoundary(geom) 41 0.0303 0.03214 0.0353 1.06% Castro::construct_new_source() 50 0.02935 0.03056 0.03278 0.98% Gravity::interpolate_monopole_grav() 21 0.02647 0.02679 0.02713 0.81% Castro::construct_new_gravity_source() 10 0.023 0.0243 0.02586 0.77% Castro::post_init() 1 0.02374 0.02391 0.02405 0.72% Amr::writePlotFile() 2 0.02153 0.02171 0.02212 0.66% Castro::finalize_do_advance() 10 0.01216 0.01844 0.02176 0.65% Castro::post_timestep() 10 0.01477 0.01614 0.01701 0.51% Castro::apply_source_to_state() 20 0.01023 0.01261 0.01366 0.41% FabArray::Saxpy() 20 0.01019 0.01256 0.01362 0.41% Castro::check_for_nan() 20 0.01043 0.01131 0.01228 0.37% MultiFab::contains_nan() 20 0.0104 0.01128 0.01226 0.37% Castro::Castro() 1 0.0104 0.01097 0.01187 0.36% FabArray::setDomainBndry() 41 0.007503 0.01011 0.01171 0.35% VisMF::Write(FabArray) 2 0.008425 0.009248 0.0115 0.34% Castro::construct_old_source() 50 0.006993 0.009837 0.01058 0.32% Castro::construct_old_gravity_source() 10 0.006952 0.00977 0.01051 0.31% Castro::computeNewDt() 9 0.008728 0.008739 0.008748 0.26% Castro::initMFs() 1 0.006369 0.006937 0.008533 0.26% Other 261 0.02537 0.02972 0.03322 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 40 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6751 KiB 6758 KiB 6764 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4555 KiB 4562 KiB 4589 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 223 KiB 247 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2801 KiB 2804 KiB 2806 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 235 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 41 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-15-g546cc5e16431-dirty) finalized