Initializing AMReX (25.06-14-g65bf80d763f6)...
MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (25.06-14-g65bf80d763f6) initialized

Starting run at 11:49:21 UTC on 2025-06-13.
Successfully read inputs file ... 

Castro git describe: 25.06-3-gb5799437e
AMReX git describe: 25.06-14-g65bf80d76
Microphysics git describe: 25.06-11-gf3ca3777

reading extern runtime parameters ...
3 Species: 
C12  O16  Mg24  
Successfully read inputs file ... 
INITIAL GRIDS 
  Level 0   8 grids  262144 cells  100 % of domain
            smallest grid: 32 x 32 x 32  biggest grid: 32 x 32 x 32

PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.014815111  seconds

[Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells

STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05


[STEP 1] Coarse TimeStep time: 0.338810922
[STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells

STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05


[STEP 2] Coarse TimeStep time: 0.324070336
[STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells

STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05


[STEP 3] Coarse TimeStep time: 0.309001309
[STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells

STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05


[STEP 4] Coarse TimeStep time: 0.310126375
[STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells

STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05


[STEP 5] Coarse TimeStep time: 0.360437721
[STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells

STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05


[STEP 6] Coarse TimeStep time: 0.303600924
[STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells

STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05


[STEP 7] Coarse TimeStep time: 0.293033542
[STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells

STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05


[STEP 8] Coarse TimeStep time: 0.292050634
[STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells

STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05


[STEP 9] Coarse TimeStep time: 0.292760666
[STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

[Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells

STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05


[STEP 10] Coarse TimeStep time: 0.293207161
[STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998]

PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.007528707  seconds


Ending run at 11:49:24 UTC on 2025-06-13.
Run time = 3.294757631
Run time without initialization = 3.129749052

  Average number of zones advanced per microsecond: 0.838
  Average number of zones advanced per microsecond per rank: 0.105



TinyProfiler total time across processes [min...avg...max]: 3.2938 ... 3.2943 ... 3.2948

-------------------------------------------------------------------------------------------
Name                                        NCalls  Excl. Min  Excl. Avg  Excl. Max   Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source()            10     2.0830     2.1912     2.2410  68.02%
Gravity::make_radial_gravity()                  21     0.2849     0.2941     0.3095   9.39%
check_for_negative_density()                    10    0.03388    0.08293     0.1925   5.84%
Castro::initData()                               1    0.04465    0.07234     0.1016   3.08%
amrex::Copy()                                  193    0.06384    0.07847    0.08837   2.68%
Castro::estTimeStep()                           21    0.02273    0.05685     0.0866   2.63%
FabArray::ParallelCopy_finish()                 41    0.03848    0.04731    0.08325   2.53%
FabArray::setVal()                             143    0.05303    0.06651    0.07293   2.21%
Castro::reset_internal_energy(Fab)            1008    0.04491    0.04609    0.04843   1.47%
Castro::normalize_species()                     62    0.04459    0.04567    0.04698   1.43%
FabArray::ParallelCopy_nowait()                 41    0.03561    0.04119    0.04283   1.30%
FillPatchIterator::Initialize                   41    0.02773    0.03211    0.03442   1.04%
StateData::FillBoundary(geom)                   41    0.02894    0.03185    0.03336   1.01%
Gravity::interpolate_monopole_grav()            21    0.02635    0.02656    0.02686   0.82%
Castro::construct_new_gravity_source()          10    0.02298    0.02446    0.02676   0.81%
Castro::computeTemp()                           63     0.0175    0.01816    0.01879   0.57%
Castro::initialize_do_advance()                 10    0.01143    0.01617    0.01746   0.53%
Castro::initialize_advance()                    10   0.005328    0.01082    0.01394   0.42%
FabArray::Saxpy()                               20    0.01089    0.01255    0.01336   0.41%
FabArray::setDomainBndry()                      41   0.009281     0.0112    0.01312   0.40%
VisMF::Write(FabArray)                           2   0.009218   0.009765    0.01292   0.39%
MultiFab::contains_nan()                        20    0.01035    0.01114    0.01228   0.37%
Amr::writePlotFile()                             2   0.007802   0.009844    0.01035   0.31%
Castro::construct_old_gravity_source()          10   0.007106   0.009538    0.01007   0.31%
Castro::initMFs()                                1   0.006785   0.007173   0.008128   0.25%
Castro::construct_new_source()                  50    0.00553   0.005989   0.006303   0.19%
main()                                           1   0.004071    0.00415   0.004277   0.13%
Gravity::get_new_grav_vector()                  11   0.002898   0.003502   0.003821   0.12%
Amr::coarseTimeStep()                           10   0.001127   0.001925   0.002529   0.08%
Gravity::get_old_grav_vector()                  10   0.001516   0.002006   0.002444   0.07%
Castro::finalize_do_advance()                   10   0.000915   0.001151   0.001307   0.04%
AmrLevel::FillPatch()                           41  0.0007889    0.00109   0.001221   0.04%
Amr::timeStep()                                 10  0.0001373  0.0001832  0.0003855   0.01%
Castro::reset_internal_energy(MultiFab)         63  0.0002603  0.0002784  0.0003101   0.01%
Castro::do_advance_ctu()                        10  0.0001387  0.0001583   0.000183   0.01%
Castro::clean_state()                           62  0.0001272  0.0001448  0.0001549   0.00%
StateDataPhysBCFunct::()                        41  9.806e-05  0.0001102  0.0001353   0.00%
Castro::do_old_sources()                        10  7.446e-05  8.859e-05  0.0001012   0.00%
FillPatchIterator::FillFromLevel0()             41  8.501e-05  9.483e-05   0.000101   0.00%
Castro::Castro()                                 1  4.586e-05   8.11e-05  9.828e-05   0.00%
FabArray::ParallelCopy()                        41  7.933e-05  8.715e-05  9.395e-05   0.00%
Castro::construct_old_source()                  50  4.912e-05  6.816e-05  7.856e-05   0.00%
FillPatchSingleLevel                            41  6.057e-05  6.603e-05  7.331e-05   0.00%
Castro::do_new_sources()                        10  5.315e-05    6.1e-05  7.045e-05   0.00%
Amr::FinalizeInit()                              1  4.186e-06  1.293e-05  6.721e-05   0.00%
Amr::defBaseLevel()                              1  4.167e-05  5.377e-05  6.617e-05   0.00%
Castro::apply_source_to_state()                 20   4.19e-05  4.901e-05  5.594e-05   0.00%
Castro::subcycle_advance_ctu()                  10  3.685e-05  4.554e-05  5.411e-05   0.00%
Castro::construct_old_gravity()                 10  3.432e-05  4.139e-05   5.24e-05   0.00%
Castro::advance()                               10  3.764e-05  4.758e-05  5.188e-05   0.00%
Castro::construct_new_gravity()                 10  2.838e-05  3.589e-05  4.366e-05   0.00%
Castro::expand_state()                          10  1.996e-05  2.349e-05  2.815e-05   0.00%
Castro::check_for_nan()                         20  2.197e-05  2.441e-05  2.726e-05   0.00%
Castro::post_init()                              1  1.538e-05  1.834e-05  2.218e-05   0.00%
Castro::post_timestep()                         10  1.368e-05  1.638e-05  1.831e-05   0.00%
AmrLevel::AmrLevel(dm)                           1  7.797e-06  8.994e-06  1.018e-05   0.00%
Castro::computeNewDt()                           9  7.824e-06  9.465e-06  1.013e-05   0.00%
Amr::InitializeInit()                            1  2.366e-06  3.388e-06  6.383e-06   0.00%
Castro::computeInitialDt()                       2  3.532e-06  4.431e-06  5.328e-06   0.00%
Amr::initialInit()                               1   1.73e-06  2.086e-06  2.746e-06   0.00%
Amr::init()                                      1    1.9e-06  2.121e-06  2.527e-06   0.00%
Other                                          260    0.01513    0.01873    0.02072   0.63%
-------------------------------------------------------------------------------------------

-------------------------------------------------------------------------------------------
Name                                        NCalls  Incl. Min  Incl. Avg  Incl. Max   Max %
-------------------------------------------------------------------------------------------
main()                                           1      3.294      3.294      3.295 100.00%
Amr::coarseTimeStep()                           10      3.118      3.118      3.118  94.63%
Amr::timeStep()                                 10      3.106      3.106      3.107  94.31%
Castro::advance()                               10       3.09       3.09      3.091  93.81%
Castro::subcycle_advance_ctu()                  10      3.014      3.019      3.035  92.10%
Castro::do_advance_ctu()                        10      3.014      3.018      3.035  92.10%
Castro::construct_ctu_hydro_source()            10      2.292      2.295        2.3  69.80%
Gravity::make_radial_gravity()                  21     0.3017     0.3104     0.3231   9.81%
Gravity::get_new_grav_vector()                  11     0.2067     0.2094     0.2106   6.39%
AmrLevel::FillPatch()                           41     0.1839     0.1962     0.2099   6.37%
check_for_negative_density()                    10    0.03388    0.08293     0.1925   5.84%
Castro::construct_old_gravity()                 10     0.1752     0.1814     0.1919   5.83%
Gravity::get_old_grav_vector()                  10     0.1744     0.1808     0.1914   5.81%
Castro::construct_new_gravity()                 10     0.1843     0.1866     0.1875   5.69%
FillPatchIterator::Initialize                   41     0.1529     0.1641     0.1852   5.62%
Castro::initialize_do_advance()                 10     0.1581     0.1635     0.1685   5.11%
Amr::init()                                      1     0.1636     0.1643     0.1647   5.00%
Amr::initialInit()                               1     0.1486     0.1497     0.1503   4.56%
FillPatchIterator::FillFromLevel0()             41     0.1128     0.1208     0.1482   4.50%
FillPatchSingleLevel                            41     0.1127     0.1207     0.1481   4.50%
Amr::InitializeInit()                            1     0.0672    0.09423     0.1229   3.73%
Amr::defBaseLevel()                              1     0.0672    0.09423     0.1229   3.73%
Castro::expand_state()                          10     0.1038     0.1106     0.1208   3.67%
Castro::clean_state()                           62     0.1127     0.1155     0.1193   3.62%
FabArray::ParallelCopy()                        41    0.08026    0.08867      0.119   3.61%
Castro::initData()                               1    0.04861    0.07639     0.1056   3.21%
Castro::do_old_sources()                        10    0.08946     0.0931    0.09619   2.92%
amrex::Copy()                                  193    0.06384    0.07847    0.08837   2.68%
Castro::estTimeStep()                           21    0.02273    0.05685     0.0866   2.63%
FabArray::ParallelCopy_finish()                 41    0.03848    0.04731    0.08325   2.53%
Amr::FinalizeInit()                              1    0.02684    0.05548     0.0821   2.49%
Castro::initialize_advance()                    10    0.05227    0.06866    0.07311   2.22%
FabArray::setVal()                             143    0.05303    0.06651    0.07293   2.21%
Castro::do_new_sources()                        10    0.05987    0.06389     0.0703   2.13%
Castro::computeTemp()                           63    0.06267    0.06453    0.06753   2.05%
Castro::computeInitialDt()                       2    0.00212    0.03087    0.05744   1.74%
Castro::reset_internal_energy(MultiFab)         63    0.04517    0.04637    0.04874   1.48%
Castro::reset_internal_energy(Fab)            1008    0.04491    0.04609    0.04843   1.47%
Castro::normalize_species()                     62    0.04459    0.04567    0.04698   1.43%
FabArray::ParallelCopy_nowait()                 41     0.0357    0.04127    0.04291   1.30%
StateDataPhysBCFunct::()                        41    0.02904    0.03196    0.03347   1.02%
StateData::FillBoundary(geom)                   41    0.02894    0.03185    0.03336   1.01%
Castro::construct_new_source()                  50    0.02883    0.03044    0.03305   1.00%
Gravity::interpolate_monopole_grav()            21    0.02635    0.02656    0.02686   0.82%
Castro::construct_new_gravity_source()          10    0.02298    0.02446    0.02676   0.81%
Castro::post_init()                              1    0.02361    0.02403    0.02427   0.74%
Castro::finalize_do_advance()                   10    0.01219    0.01861    0.02275   0.69%
Amr::writePlotFile()                             2    0.02206     0.0222    0.02262   0.69%
Castro::post_timestep()                         10    0.01536    0.01579    0.01628   0.49%
Castro::apply_source_to_state()                 20    0.01093     0.0126    0.01341   0.41%
FabArray::Saxpy()                               20    0.01089    0.01255    0.01336   0.41%
FabArray::setDomainBndry()                      41   0.009281     0.0112    0.01312   0.40%
VisMF::Write(FabArray)                           2   0.009218   0.009765    0.01292   0.39%
Castro::check_for_nan()                         20    0.01038    0.01116     0.0123   0.37%
MultiFab::contains_nan()                        20    0.01035    0.01114    0.01228   0.37%
Castro::Castro()                                 1    0.01067    0.01129    0.01206   0.37%
Castro::construct_old_source()                  50   0.007155   0.009607    0.01014   0.31%
Castro::construct_old_gravity_source()          10   0.007106   0.009538    0.01007   0.31%
Castro::computeNewDt()                           9   0.008514   0.008533   0.008552   0.26%
Castro::initMFs()                                1   0.006785   0.007173   0.008128   0.25%
AmrLevel::AmrLevel(dm)                           1   0.005389    0.00576   0.006277   0.19%
Other                                          260    0.01979     0.0244    0.02737   0.83%
-------------------------------------------------------------------------------------------

Unused ParmParse Variables:
  [TOP]::amr.ref_ratio(nvals = 4)  :: [2, 2, 2, 2]
  [TOP]::amr.regrid_int(nvals = 4)  :: [2, 2, 2, 2]

Pinned Memory Usage:
---------------------------------------------------------------------------------------------------------------------
Name                            Nalloc  Nfree  AvgMem min  AvgMem avg  AvgMem max  MaxMem min  MaxMem avg  MaxMem max
---------------------------------------------------------------------------------------------------------------------
The_Pinned_Arena::Initialize()       8      8      36   B      41   B      53   B    8192 KiB    8192 KiB    8192 KiB
---------------------------------------------------------------------------------------------------------------------

Cpu Memory Usage:
---------------------------------------------------------------------------------------------------------------------------
Name                                  Nalloc  Nfree  AvgMem min  AvgMem avg  AvgMem max  MaxMem min  MaxMem avg  MaxMem max
---------------------------------------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source()    2880   2880      13 MiB      14 MiB      15 MiB      24 MiB      24 MiB      24 MiB
Castro::initMFs()                         48     48    8659 KiB    8669 KiB    8673 KiB    8712 KiB    8712 KiB    8712 KiB
Castro::swap_state_time_levels()          32     32    6777 KiB    6779 KiB    6781 KiB    7153 KiB    7153 KiB    7153 KiB
StateData::define()                       32     32    7133 KiB    7140 KiB    7143 KiB    7153 KiB    7153 KiB    7153 KiB
Castro::initialize_do_advance()           80     80    4571 KiB    4577 KiB    4598 KiB    5000 KiB    5000 KiB    5000 KiB
FillPatchIterator::Initialize            328    328     210 KiB     225 KiB     243 KiB    5000 KiB    5000 KiB    5000 KiB
Amr::writePlotFile()                      16     16      16 KiB      17 KiB      20 KiB    3584 KiB    3584 KiB    3584 KiB
Castro::initialize_advance()              80     80    2811 KiB    2813 KiB    2814 KiB    3000 KiB    3000 KiB    3000 KiB
Gravity::make_radial_gravity()           168    168     233 KiB     240 KiB     250 KiB    2560 KiB    2560 KiB    2560 KiB
FabArray::ParallelCopy_nowait()          656    656      37 KiB      41 KiB      57 KiB    2170 KiB    2170 KiB    2170 KiB
Castro::buildMetrics()                    32     32    2027 KiB    2029 KiB    2030 KiB    2037 KiB    2037 KiB    2037 KiB
Gravity::get_new_grav_vector()            88     88      80 KiB      81 KiB      82 KiB    1286 KiB    1286 KiB    1286 KiB
Gravity::get_old_grav_vector()            80     80      68 KiB      70 KiB      74 KiB    1286 KiB    1286 KiB    1286 KiB
---------------------------------------------------------------------------------------------------------------------------

AMReX (25.06-14-g65bf80d763f6) finalized