Initializing AMReX (25.06-14-g65bf80d763f6)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-14-g65bf80d763f6) initialized Starting run at 11:49:21 UTC on 2025-06-13. Successfully read inputs file ... Castro git describe: 25.06-3-gb5799437e AMReX git describe: 25.06-14-g65bf80d76 Microphysics git describe: 25.06-11-gf3ca3777 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014815111 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.338810922 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.324070336 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.309001309 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.310126375 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.360437721 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303600924 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.293033542 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.292050634 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.292760666 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.293207161 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007528707 seconds Ending run at 11:49:24 UTC on 2025-06-13. Run time = 3.294757631 Run time without initialization = 3.129749052 Average number of zones advanced per microsecond: 0.838 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.2938 ... 3.2943 ... 3.2948 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0830 2.1912 2.2410 68.02% Gravity::make_radial_gravity() 21 0.2849 0.2941 0.3095 9.39% check_for_negative_density() 10 0.03388 0.08293 0.1925 5.84% Castro::initData() 1 0.04465 0.07234 0.1016 3.08% amrex::Copy() 193 0.06384 0.07847 0.08837 2.68% Castro::estTimeStep() 21 0.02273 0.05685 0.0866 2.63% FabArray::ParallelCopy_finish() 41 0.03848 0.04731 0.08325 2.53% FabArray::setVal() 143 0.05303 0.06651 0.07293 2.21% Castro::reset_internal_energy(Fab) 1008 0.04491 0.04609 0.04843 1.47% Castro::normalize_species() 62 0.04459 0.04567 0.04698 1.43% FabArray::ParallelCopy_nowait() 41 0.03561 0.04119 0.04283 1.30% FillPatchIterator::Initialize 41 0.02773 0.03211 0.03442 1.04% StateData::FillBoundary(geom) 41 0.02894 0.03185 0.03336 1.01% Gravity::interpolate_monopole_grav() 21 0.02635 0.02656 0.02686 0.82% Castro::construct_new_gravity_source() 10 0.02298 0.02446 0.02676 0.81% Castro::computeTemp() 63 0.0175 0.01816 0.01879 0.57% Castro::initialize_do_advance() 10 0.01143 0.01617 0.01746 0.53% Castro::initialize_advance() 10 0.005328 0.01082 0.01394 0.42% FabArray::Saxpy() 20 0.01089 0.01255 0.01336 0.41% FabArray::setDomainBndry() 41 0.009281 0.0112 0.01312 0.40% VisMF::Write(FabArray) 2 0.009218 0.009765 0.01292 0.39% MultiFab::contains_nan() 20 0.01035 0.01114 0.01228 0.37% Amr::writePlotFile() 2 0.007802 0.009844 0.01035 0.31% Castro::construct_old_gravity_source() 10 0.007106 0.009538 0.01007 0.31% Castro::initMFs() 1 0.006785 0.007173 0.008128 0.25% Castro::construct_new_source() 50 0.00553 0.005989 0.006303 0.19% main() 1 0.004071 0.00415 0.004277 0.13% Gravity::get_new_grav_vector() 11 0.002898 0.003502 0.003821 0.12% Amr::coarseTimeStep() 10 0.001127 0.001925 0.002529 0.08% Gravity::get_old_grav_vector() 10 0.001516 0.002006 0.002444 0.07% Castro::finalize_do_advance() 10 0.000915 0.001151 0.001307 0.04% AmrLevel::FillPatch() 41 0.0007889 0.00109 0.001221 0.04% Amr::timeStep() 10 0.0001373 0.0001832 0.0003855 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002603 0.0002784 0.0003101 0.01% Castro::do_advance_ctu() 10 0.0001387 0.0001583 0.000183 0.01% Castro::clean_state() 62 0.0001272 0.0001448 0.0001549 0.00% StateDataPhysBCFunct::() 41 9.806e-05 0.0001102 0.0001353 0.00% Castro::do_old_sources() 10 7.446e-05 8.859e-05 0.0001012 0.00% FillPatchIterator::FillFromLevel0() 41 8.501e-05 9.483e-05 0.000101 0.00% Castro::Castro() 1 4.586e-05 8.11e-05 9.828e-05 0.00% FabArray::ParallelCopy() 41 7.933e-05 8.715e-05 9.395e-05 0.00% Castro::construct_old_source() 50 4.912e-05 6.816e-05 7.856e-05 0.00% FillPatchSingleLevel 41 6.057e-05 6.603e-05 7.331e-05 0.00% Castro::do_new_sources() 10 5.315e-05 6.1e-05 7.045e-05 0.00% Amr::FinalizeInit() 1 4.186e-06 1.293e-05 6.721e-05 0.00% Amr::defBaseLevel() 1 4.167e-05 5.377e-05 6.617e-05 0.00% Castro::apply_source_to_state() 20 4.19e-05 4.901e-05 5.594e-05 0.00% Castro::subcycle_advance_ctu() 10 3.685e-05 4.554e-05 5.411e-05 0.00% Castro::construct_old_gravity() 10 3.432e-05 4.139e-05 5.24e-05 0.00% Castro::advance() 10 3.764e-05 4.758e-05 5.188e-05 0.00% Castro::construct_new_gravity() 10 2.838e-05 3.589e-05 4.366e-05 0.00% Castro::expand_state() 10 1.996e-05 2.349e-05 2.815e-05 0.00% Castro::check_for_nan() 20 2.197e-05 2.441e-05 2.726e-05 0.00% Castro::post_init() 1 1.538e-05 1.834e-05 2.218e-05 0.00% Castro::post_timestep() 10 1.368e-05 1.638e-05 1.831e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.797e-06 8.994e-06 1.018e-05 0.00% Castro::computeNewDt() 9 7.824e-06 9.465e-06 1.013e-05 0.00% Amr::InitializeInit() 1 2.366e-06 3.388e-06 6.383e-06 0.00% Castro::computeInitialDt() 2 3.532e-06 4.431e-06 5.328e-06 0.00% Amr::initialInit() 1 1.73e-06 2.086e-06 2.746e-06 0.00% Amr::init() 1 1.9e-06 2.121e-06 2.527e-06 0.00% Other 260 0.01513 0.01873 0.02072 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.294 3.294 3.295 100.00% Amr::coarseTimeStep() 10 3.118 3.118 3.118 94.63% Amr::timeStep() 10 3.106 3.106 3.107 94.31% Castro::advance() 10 3.09 3.09 3.091 93.81% Castro::subcycle_advance_ctu() 10 3.014 3.019 3.035 92.10% Castro::do_advance_ctu() 10 3.014 3.018 3.035 92.10% Castro::construct_ctu_hydro_source() 10 2.292 2.295 2.3 69.80% Gravity::make_radial_gravity() 21 0.3017 0.3104 0.3231 9.81% Gravity::get_new_grav_vector() 11 0.2067 0.2094 0.2106 6.39% AmrLevel::FillPatch() 41 0.1839 0.1962 0.2099 6.37% check_for_negative_density() 10 0.03388 0.08293 0.1925 5.84% Castro::construct_old_gravity() 10 0.1752 0.1814 0.1919 5.83% Gravity::get_old_grav_vector() 10 0.1744 0.1808 0.1914 5.81% Castro::construct_new_gravity() 10 0.1843 0.1866 0.1875 5.69% FillPatchIterator::Initialize 41 0.1529 0.1641 0.1852 5.62% Castro::initialize_do_advance() 10 0.1581 0.1635 0.1685 5.11% Amr::init() 1 0.1636 0.1643 0.1647 5.00% Amr::initialInit() 1 0.1486 0.1497 0.1503 4.56% FillPatchIterator::FillFromLevel0() 41 0.1128 0.1208 0.1482 4.50% FillPatchSingleLevel 41 0.1127 0.1207 0.1481 4.50% Amr::InitializeInit() 1 0.0672 0.09423 0.1229 3.73% Amr::defBaseLevel() 1 0.0672 0.09423 0.1229 3.73% Castro::expand_state() 10 0.1038 0.1106 0.1208 3.67% Castro::clean_state() 62 0.1127 0.1155 0.1193 3.62% FabArray::ParallelCopy() 41 0.08026 0.08867 0.119 3.61% Castro::initData() 1 0.04861 0.07639 0.1056 3.21% Castro::do_old_sources() 10 0.08946 0.0931 0.09619 2.92% amrex::Copy() 193 0.06384 0.07847 0.08837 2.68% Castro::estTimeStep() 21 0.02273 0.05685 0.0866 2.63% FabArray::ParallelCopy_finish() 41 0.03848 0.04731 0.08325 2.53% Amr::FinalizeInit() 1 0.02684 0.05548 0.0821 2.49% Castro::initialize_advance() 10 0.05227 0.06866 0.07311 2.22% FabArray::setVal() 143 0.05303 0.06651 0.07293 2.21% Castro::do_new_sources() 10 0.05987 0.06389 0.0703 2.13% Castro::computeTemp() 63 0.06267 0.06453 0.06753 2.05% Castro::computeInitialDt() 2 0.00212 0.03087 0.05744 1.74% Castro::reset_internal_energy(MultiFab) 63 0.04517 0.04637 0.04874 1.48% Castro::reset_internal_energy(Fab) 1008 0.04491 0.04609 0.04843 1.47% Castro::normalize_species() 62 0.04459 0.04567 0.04698 1.43% FabArray::ParallelCopy_nowait() 41 0.0357 0.04127 0.04291 1.30% StateDataPhysBCFunct::() 41 0.02904 0.03196 0.03347 1.02% StateData::FillBoundary(geom) 41 0.02894 0.03185 0.03336 1.01% Castro::construct_new_source() 50 0.02883 0.03044 0.03305 1.00% Gravity::interpolate_monopole_grav() 21 0.02635 0.02656 0.02686 0.82% Castro::construct_new_gravity_source() 10 0.02298 0.02446 0.02676 0.81% Castro::post_init() 1 0.02361 0.02403 0.02427 0.74% Castro::finalize_do_advance() 10 0.01219 0.01861 0.02275 0.69% Amr::writePlotFile() 2 0.02206 0.0222 0.02262 0.69% Castro::post_timestep() 10 0.01536 0.01579 0.01628 0.49% Castro::apply_source_to_state() 20 0.01093 0.0126 0.01341 0.41% FabArray::Saxpy() 20 0.01089 0.01255 0.01336 0.41% FabArray::setDomainBndry() 41 0.009281 0.0112 0.01312 0.40% VisMF::Write(FabArray) 2 0.009218 0.009765 0.01292 0.39% Castro::check_for_nan() 20 0.01038 0.01116 0.0123 0.37% MultiFab::contains_nan() 20 0.01035 0.01114 0.01228 0.37% Castro::Castro() 1 0.01067 0.01129 0.01206 0.37% Castro::construct_old_source() 50 0.007155 0.009607 0.01014 0.31% Castro::construct_old_gravity_source() 10 0.007106 0.009538 0.01007 0.31% Castro::computeNewDt() 9 0.008514 0.008533 0.008552 0.26% Castro::initMFs() 1 0.006785 0.007173 0.008128 0.25% AmrLevel::AmrLevel(dm) 1 0.005389 0.00576 0.006277 0.19% Other 260 0.01979 0.0244 0.02737 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 41 B 53 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6777 KiB 6779 KiB 6781 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4571 KiB 4577 KiB 4598 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 210 KiB 225 KiB 243 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2811 KiB 2813 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 240 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 41 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-14-g65bf80d763f6) finalized