Initializing AMReX (25.06-14-g65bf80d763f6)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-14-g65bf80d763f6) initialized Starting run at 05:26:41 UTC on 2025-06-16. Successfully read inputs file ... Castro git describe: 25.06-3-gb5799437e AMReX git describe: 25.06-14-g65bf80d76 Microphysics git describe: 25.06-13-g91c2c1bf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014549944 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.342490982 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.341522675 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314094456 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.31316783 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.376527614 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305949143 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.294869885 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295472502 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295103723 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295914888 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008133264 seconds Ending run at 05:26:45 UTC on 2025-06-16. Run time = 3.377445332 Run time without initialization = 3.188403349 Average number of zones advanced per microsecond: 0.822 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3731 ... 3.3761 ... 3.3780 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0544 2.1878 2.2515 66.65% Gravity::make_radial_gravity() 21 0.2981 0.3042 0.3161 9.36% check_for_negative_density() 10 0.04276 0.1123 0.2451 7.26% Castro::initData() 1 0.04663 0.07611 0.1167 3.45% FabArray::ParallelCopy_finish() 41 0.03876 0.06776 0.1103 3.27% Castro::estTimeStep() 21 0.03046 0.07377 0.1072 3.17% amrex::Copy() 193 0.06267 0.08069 0.09595 2.84% FabArray::setVal() 143 0.05328 0.06548 0.07255 2.15% Castro::normalize_species() 62 0.04552 0.04603 0.0479 1.42% Castro::reset_internal_energy(Fab) 1008 0.04269 0.04579 0.04737 1.40% FabArray::ParallelCopy_nowait() 41 0.03521 0.04028 0.0421 1.25% FillPatchIterator::Initialize 41 0.02756 0.03328 0.03972 1.18% StateData::FillBoundary(geom) 41 0.02968 0.0322 0.03466 1.03% Gravity::interpolate_monopole_grav() 21 0.02662 0.02784 0.03431 1.02% Castro::construct_new_gravity_source() 10 0.02252 0.0239 0.02664 0.79% Castro::computeTemp() 63 0.01674 0.01801 0.01864 0.55% Castro::initialize_do_advance() 10 0.01142 0.01611 0.01745 0.52% Castro::initialize_advance() 10 0.005284 0.01076 0.01355 0.40% FabArray::Saxpy() 20 0.01037 0.01185 0.01325 0.39% MultiFab::contains_nan() 20 0.01039 0.01145 0.01292 0.38% Amr::writePlotFile() 2 0.008018 0.01078 0.01273 0.38% VisMF::Write(FabArray) 2 0.008828 0.009741 0.01221 0.36% FabArray::setDomainBndry() 41 0.007412 0.009531 0.01068 0.32% Castro::initMFs() 1 0.006565 0.007852 0.01032 0.31% Castro::construct_old_gravity_source() 10 0.006532 0.008731 0.009222 0.27% StateData::define() 4 0.005403 0.00663 0.008459 0.25% Castro::construct_new_source() 50 0.005685 0.005979 0.006326 0.19% main() 1 0.004167 0.004394 0.004517 0.13% Gravity::get_new_grav_vector() 11 0.002829 0.003477 0.003948 0.12% Gravity::get_old_grav_vector() 10 0.001634 0.00207 0.002613 0.08% Amr::coarseTimeStep() 10 0.0009507 0.00168 0.002368 0.07% AmrLevel::FillPatch() 41 0.0007134 0.001165 0.001349 0.04% Castro::finalize_do_advance() 10 0.0005784 0.001208 0.001333 0.04% Amr::timeStep() 10 0.0001181 0.0001889 0.0004659 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000269 0.0002812 0.0002953 0.01% Castro::do_advance_ctu() 10 0.0001208 0.0001585 0.0001868 0.01% StateDataPhysBCFunct::() 41 9.9e-05 0.0001305 0.0001716 0.01% Castro::clean_state() 62 0.000127 0.0001477 0.0001709 0.01% FillPatchIterator::FillFromLevel0() 41 8.808e-05 9.878e-05 0.0001145 0.00% Castro::do_old_sources() 10 6.168e-05 8.897e-05 0.0001068 0.00% FabArray::ParallelCopy() 41 7.787e-05 8.566e-05 9.619e-05 0.00% Castro::construct_old_source() 50 4.283e-05 6.437e-05 8.607e-05 0.00% FillPatchSingleLevel 41 5.507e-05 6.967e-05 8.126e-05 0.00% Castro::do_new_sources() 10 4.583e-05 6.34e-05 7.717e-05 0.00% Amr::FinalizeInit() 1 3.43e-06 1.292e-05 7.092e-05 0.00% Castro::Castro() 1 4.994e-05 5.742e-05 6.498e-05 0.00% Amr::defBaseLevel() 1 4.153e-05 5.012e-05 6.428e-05 0.00% Castro::subcycle_advance_ctu() 10 4.086e-05 4.881e-05 5.925e-05 0.00% Castro::advance() 10 3.968e-05 5.059e-05 5.893e-05 0.00% Castro::apply_source_to_state() 20 3.924e-05 4.81e-05 5.739e-05 0.00% Castro::construct_old_gravity() 10 3.21e-05 4.449e-05 5.442e-05 0.00% Castro::construct_new_gravity() 10 2.866e-05 3.499e-05 4.069e-05 0.00% Castro::check_for_nan() 20 2.179e-05 2.991e-05 3.827e-05 0.00% Castro::expand_state() 10 1.809e-05 2.46e-05 3.656e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.562e-06 1.183e-05 2.251e-05 0.00% Castro::post_timestep() 10 1.33e-05 1.635e-05 2.143e-05 0.00% Castro::post_init() 1 1.464e-05 1.598e-05 1.785e-05 0.00% Castro::computeNewDt() 9 8.281e-06 9.318e-06 1.084e-05 0.00% Amr::InitializeInit() 1 2.781e-06 3.564e-06 6.188e-06 0.00% Castro::computeInitialDt() 2 3.404e-06 3.902e-06 4.192e-06 0.00% Amr::initialInit() 1 1.313e-06 2.044e-06 3.132e-06 0.00% Amr::init() 1 1.767e-06 2.011e-06 2.465e-06 0.00% Other 256 0.01049 0.01547 0.01905 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.373 3.376 3.378 100.00% Amr::coarseTimeStep() 10 3.176 3.176 3.176 94.01% Amr::timeStep() 10 3.164 3.164 3.165 93.70% Castro::advance() 10 3.148 3.148 3.149 93.21% Castro::subcycle_advance_ctu() 10 3.072 3.077 3.091 91.50% Castro::do_advance_ctu() 10 3.072 3.077 3.091 91.50% Castro::construct_ctu_hydro_source() 10 2.317 2.321 2.326 68.85% Gravity::make_radial_gravity() 21 0.3138 0.32 0.3288 9.73% check_for_negative_density() 10 0.04276 0.1123 0.2451 7.26% AmrLevel::FillPatch() 41 0.1931 0.2161 0.2369 7.01% FillPatchIterator::Initialize 41 0.1582 0.1835 0.2127 6.30% Gravity::get_new_grav_vector() 11 0.2089 0.2106 0.2124 6.29% Castro::construct_old_gravity() 10 0.1974 0.203 0.2108 6.24% Gravity::get_old_grav_vector() 10 0.1967 0.2023 0.2101 6.22% Castro::construct_new_gravity() 10 0.1869 0.1881 0.1895 5.61% Amr::init() 1 0.1844 0.1874 0.1893 5.60% FillPatchIterator::FillFromLevel0() 41 0.1121 0.1407 0.1777 5.26% FillPatchSingleLevel 41 0.112 0.1406 0.1776 5.26% Amr::initialInit() 1 0.1696 0.1726 0.1745 5.17% Castro::initialize_do_advance() 10 0.155 0.1626 0.1698 5.03% FabArray::ParallelCopy() 41 0.08026 0.1082 0.1457 4.31% Amr::InitializeInit() 1 0.07193 0.101 0.1433 4.24% Amr::defBaseLevel() 1 0.07192 0.101 0.1433 4.24% Castro::expand_state() 10 0.1026 0.1093 0.1221 3.61% Castro::initData() 1 0.05069 0.07978 0.1202 3.56% Castro::clean_state() 62 0.1114 0.1155 0.1198 3.55% FabArray::ParallelCopy_finish() 41 0.03876 0.06776 0.1103 3.27% Castro::do_old_sources() 10 0.09086 0.102 0.109 3.23% Castro::estTimeStep() 21 0.03046 0.07377 0.1072 3.17% Amr::FinalizeInit() 1 0.0264 0.07157 0.1014 3.00% amrex::Copy() 193 0.06267 0.08069 0.09595 2.84% Castro::computeInitialDt() 2 0.00213 0.04736 0.07704 2.28% Castro::initialize_advance() 10 0.05355 0.06829 0.07294 2.16% FabArray::setVal() 143 0.05328 0.06548 0.07255 2.15% Castro::do_new_sources() 10 0.05984 0.06253 0.06866 2.03% Castro::computeTemp() 63 0.05972 0.06409 0.06631 1.96% Castro::normalize_species() 62 0.04552 0.04603 0.0479 1.42% Castro::reset_internal_energy(MultiFab) 63 0.04298 0.04607 0.04767 1.41% Castro::reset_internal_energy(Fab) 1008 0.04269 0.04579 0.04737 1.40% FabArray::ParallelCopy_nowait() 41 0.03529 0.04036 0.04218 1.25% StateDataPhysBCFunct::() 41 0.02985 0.03233 0.0348 1.03% StateData::FillBoundary(geom) 41 0.02968 0.0322 0.03466 1.03% Gravity::interpolate_monopole_grav() 21 0.02662 0.02784 0.03431 1.02% Castro::construct_new_source() 50 0.02841 0.02988 0.03297 0.98% Castro::construct_new_gravity_source() 10 0.02252 0.0239 0.02664 0.79% Castro::post_init() 1 0.02345 0.0237 0.02382 0.71% Amr::writePlotFile() 2 0.02295 0.0231 0.02352 0.70% Castro::finalize_do_advance() 10 0.01298 0.01906 0.02286 0.68% Castro::post_timestep() 10 0.01484 0.01581 0.01626 0.48% Castro::Castro() 1 0.009675 0.01145 0.01445 0.43% Castro::apply_source_to_state() 20 0.01041 0.0119 0.0133 0.39% FabArray::Saxpy() 20 0.01037 0.01185 0.01325 0.39% Castro::check_for_nan() 20 0.01042 0.01148 0.01296 0.38% MultiFab::contains_nan() 20 0.01039 0.01145 0.01292 0.38% VisMF::Write(FabArray) 2 0.008828 0.009741 0.01221 0.36% FabArray::setDomainBndry() 41 0.007412 0.009531 0.01068 0.32% Castro::initMFs() 1 0.006565 0.007852 0.01032 0.31% Castro::construct_old_source() 50 0.006575 0.008795 0.009282 0.27% Castro::construct_old_gravity_source() 10 0.006532 0.008731 0.009222 0.27% Castro::computeNewDt() 9 0.008552 0.008574 0.008597 0.25% AmrLevel::AmrLevel(dm) 1 0.005413 0.006642 0.008478 0.25% StateData::define() 4 0.005403 0.00663 0.008459 0.25% Other 256 0.01515 0.02349 0.02925 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8650 KiB 8660 KiB 8663 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6731 KiB 6739 KiB 6746 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7126 KiB 7134 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4545 KiB 4553 KiB 4574 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 208 KiB 230 KiB 256 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2793 KiB 2797 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 237 KiB 241 KiB 248 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 45 KiB 62 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 74 KiB 77 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-14-g65bf80d763f6) finalized