Initializing AMReX (25.06-14-g65bf80d763f6)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-14-g65bf80d763f6) initialized Starting run at 05:19:37 UTC on 2025-06-17. Successfully read inputs file ... Castro git describe: 25.06-4-g95261d7fd AMReX git describe: 25.06-14-g65bf80d76 Microphysics git describe: 25.06-14-g3b767a4e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015566267 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.339678667 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.337093583 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.309827669 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.313201722 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.359944489 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.304857367 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295717661 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295906377 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.29801178 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297083403 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008003424 seconds Ending run at 05:19:40 UTC on 2025-06-17. Run time = 3.334322703 Run time without initialization = 3.164488794 Average number of zones advanced per microsecond: 0.828 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3331 ... 3.3336 ... 3.3343 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1597 2.2119 2.2760 68.26% Gravity::make_radial_gravity() 21 0.2884 0.2983 0.3136 9.40% check_for_negative_density() 10 0.02444 0.09326 0.1477 4.43% Castro::initData() 1 0.03717 0.07131 0.1016 3.05% Castro::estTimeStep() 21 0.02155 0.05703 0.09336 2.80% amrex::Copy() 193 0.06764 0.07934 0.08814 2.64% FabArray::setVal() 143 0.06073 0.06903 0.07486 2.25% FabArray::ParallelCopy_finish() 41 0.03657 0.04503 0.06857 2.06% Castro::reset_internal_energy(Fab) 1008 0.04422 0.04578 0.04851 1.45% Castro::normalize_species() 62 0.0448 0.04594 0.04735 1.42% FabArray::ParallelCopy_nowait() 41 0.0359 0.04165 0.04393 1.32% StateData::FillBoundary(geom) 41 0.02918 0.03209 0.0355 1.06% FillPatchIterator::Initialize 41 0.02862 0.03275 0.03519 1.06% Gravity::interpolate_monopole_grav() 21 0.02652 0.02685 0.02732 0.82% Castro::construct_new_gravity_source() 10 0.02307 0.02452 0.02633 0.79% Castro::computeTemp() 63 0.01752 0.01801 0.0187 0.56% Castro::initialize_do_advance() 10 0.01176 0.01647 0.01783 0.53% Castro::initialize_advance() 10 0.01061 0.01212 0.01437 0.43% FabArray::Saxpy() 20 0.01089 0.01258 0.01372 0.41% MultiFab::contains_nan() 20 0.01068 0.01144 0.01267 0.38% VisMF::Write(FabArray) 2 0.009251 0.009779 0.01231 0.37% Amr::writePlotFile() 2 0.008563 0.01145 0.01213 0.36% FabArray::setDomainBndry() 41 0.007623 0.009817 0.01119 0.34% Castro::construct_old_gravity_source() 10 0.007155 0.009525 0.01009 0.30% Castro::initMFs() 1 0.006444 0.006818 0.008303 0.25% Castro::enforce_min_density() 62 0.005821 0.006089 0.006352 0.19% Castro::construct_new_source() 50 0.005516 0.005976 0.006246 0.19% main() 1 0.003854 0.004179 0.004485 0.13% Gravity::get_new_grav_vector() 11 0.003149 0.003607 0.003969 0.12% Gravity::get_old_grav_vector() 10 0.001424 0.002009 0.002565 0.08% Amr::coarseTimeStep() 10 0.0007498 0.001945 0.002558 0.08% Castro::finalize_do_advance() 10 0.0005619 0.001137 0.001251 0.04% AmrLevel::FillPatch() 41 0.0007752 0.0009653 0.001129 0.03% Amr::timeStep() 10 0.0001378 0.0001847 0.0004061 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002698 0.0002856 0.0002993 0.01% Castro::do_advance_ctu() 10 0.0001382 0.0001598 0.0001881 0.01% Castro::clean_state() 62 0.0001262 0.0001424 0.0001584 0.00% StateDataPhysBCFunct::() 41 0.0001003 0.0001103 0.000123 0.00% FillPatchIterator::FillFromLevel0() 41 9.147e-05 0.0001011 0.0001125 0.00% Castro::do_old_sources() 10 7.852e-05 9.3e-05 0.0001061 0.00% FabArray::ParallelCopy() 41 8.447e-05 8.992e-05 9.601e-05 0.00% Amr::FinalizeInit() 1 3.927e-06 1.569e-05 9.231e-05 0.00% Castro::Castro() 1 4.54e-05 6.87e-05 8.982e-05 0.00% Castro::construct_old_source() 50 5.406e-05 6.902e-05 7.745e-05 0.00% Castro::do_new_sources() 10 5.481e-05 6.359e-05 7.102e-05 0.00% FillPatchSingleLevel 41 6.008e-05 6.471e-05 7.084e-05 0.00% Castro::apply_source_to_state() 20 4.106e-05 4.868e-05 5.474e-05 0.00% Castro::subcycle_advance_ctu() 10 3.624e-05 4.67e-05 5.349e-05 0.00% Castro::advance() 10 4.538e-05 4.897e-05 5.314e-05 0.00% Castro::construct_old_gravity() 10 3.843e-05 4.487e-05 5.201e-05 0.00% Amr::defBaseLevel() 1 3.563e-05 4.311e-05 5.101e-05 0.00% Castro::construct_new_gravity() 10 3.079e-05 3.584e-05 4.133e-05 0.00% Castro::expand_state() 10 2.377e-05 2.635e-05 2.911e-05 0.00% Castro::check_for_nan() 20 2.288e-05 2.479e-05 2.686e-05 0.00% Castro::post_init() 1 1.429e-05 1.664e-05 1.867e-05 0.00% Castro::post_timestep() 10 1.322e-05 1.603e-05 1.846e-05 0.00% Castro::computeNewDt() 9 8.692e-06 9.682e-06 1.187e-05 0.00% Amr::InitializeInit() 1 2.519e-06 3.372e-06 6.308e-06 0.00% Castro::computeInitialDt() 2 3.634e-06 4.132e-06 5.2e-06 0.00% Amr::init() 1 1.625e-06 2.157e-06 2.847e-06 0.00% Amr::initialInit() 1 1.507e-06 1.906e-06 2.266e-06 0.00% Other 199 0.01007 0.01307 0.01483 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.333 3.334 3.334 100.00% Amr::coarseTimeStep() 10 3.152 3.152 3.152 94.53% Amr::timeStep() 10 3.14 3.14 3.142 94.22% Castro::advance() 10 3.124 3.124 3.125 93.71% Castro::subcycle_advance_ctu() 10 3.045 3.049 3.054 91.59% Castro::do_advance_ctu() 10 3.045 3.049 3.054 91.59% Castro::construct_ctu_hydro_source() 10 2.322 2.326 2.331 69.91% Gravity::make_radial_gravity() 21 0.3043 0.3145 0.3276 9.82% Gravity::get_new_grav_vector() 11 0.2087 0.21 0.2114 6.34% AmrLevel::FillPatch() 41 0.1831 0.1938 0.2038 6.11% Castro::construct_old_gravity() 10 0.179 0.1861 0.198 5.94% Gravity::get_old_grav_vector() 10 0.1782 0.1854 0.1973 5.92% Castro::construct_new_gravity() 10 0.1836 0.1842 0.1852 5.56% FillPatchIterator::Initialize 41 0.1511 0.1618 0.1704 5.11% Amr::init() 1 0.1682 0.169 0.1695 5.08% Castro::initialize_do_advance() 10 0.1551 0.1616 0.167 5.01% Amr::initialInit() 1 0.1524 0.153 0.1535 4.60% check_for_negative_density() 10 0.02444 0.09326 0.1477 4.43% FillPatchIterator::FillFromLevel0() 41 0.1125 0.1192 0.1341 4.02% FillPatchSingleLevel 41 0.1124 0.1191 0.134 4.02% Amr::InitializeInit() 1 0.05868 0.09298 0.1237 3.71% Amr::defBaseLevel() 1 0.05868 0.09298 0.1237 3.71% Castro::clean_state() 62 0.1124 0.1154 0.1204 3.61% Castro::expand_state() 10 0.101 0.1081 0.113 3.39% Castro::initData() 1 0.04047 0.07524 0.1057 3.17% FabArray::ParallelCopy() 41 0.07979 0.08686 0.1046 3.14% Castro::do_old_sources() 10 0.09166 0.09328 0.0957 2.87% Amr::FinalizeInit() 1 0.02977 0.05997 0.09371 2.81% Castro::estTimeStep() 21 0.02155 0.05703 0.09336 2.80% amrex::Copy() 193 0.06764 0.07934 0.08814 2.64% Castro::initialize_advance() 10 0.06642 0.07243 0.07595 2.28% FabArray::setVal() 143 0.06073 0.06903 0.07486 2.25% Castro::do_new_sources() 10 0.05986 0.06389 0.06939 2.08% FabArray::ParallelCopy_finish() 41 0.03657 0.04503 0.06857 2.06% Castro::computeTemp() 63 0.06232 0.06408 0.06751 2.02% Castro::computeInitialDt() 2 0.002148 0.03238 0.06628 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04449 0.04607 0.0488 1.46% Castro::reset_internal_energy(Fab) 1008 0.04422 0.04578 0.04851 1.45% Castro::normalize_species() 62 0.0448 0.04594 0.04735 1.42% FabArray::ParallelCopy_nowait() 41 0.03599 0.04174 0.04401 1.32% StateDataPhysBCFunct::() 41 0.0293 0.0322 0.03562 1.07% StateData::FillBoundary(geom) 41 0.02918 0.03209 0.0355 1.06% Castro::construct_new_source() 50 0.0291 0.0305 0.03258 0.98% Gravity::interpolate_monopole_grav() 21 0.02652 0.02685 0.02732 0.82% Castro::post_init() 1 0.02686 0.02705 0.02724 0.82% Castro::construct_new_gravity_source() 10 0.02307 0.02452 0.02633 0.79% Amr::writePlotFile() 2 0.02386 0.02416 0.02438 0.73% Castro::finalize_do_advance() 10 0.01133 0.01725 0.02148 0.64% Castro::post_timestep() 10 0.01527 0.01583 0.01679 0.50% Castro::apply_source_to_state() 20 0.01093 0.01263 0.01378 0.41% FabArray::Saxpy() 20 0.01089 0.01258 0.01372 0.41% Castro::check_for_nan() 20 0.01071 0.01146 0.0127 0.38% MultiFab::contains_nan() 20 0.01068 0.01144 0.01267 0.38% VisMF::Write(FabArray) 2 0.009251 0.009779 0.01231 0.37% Castro::Castro() 1 0.01072 0.01106 0.01191 0.36% FabArray::setDomainBndry() 41 0.007623 0.009817 0.01119 0.34% Castro::construct_old_source() 50 0.007214 0.009594 0.01016 0.30% Castro::construct_old_gravity_source() 10 0.007155 0.009525 0.01009 0.30% Castro::computeNewDt() 9 0.008538 0.008554 0.00857 0.26% Castro::initMFs() 1 0.006444 0.006818 0.008303 0.25% Castro::enforce_min_density() 62 0.005821 0.006089 0.006352 0.19% Other 199 0.02021 0.02462 0.02813 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 37 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8652 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6764 KiB 6771 KiB 6774 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7127 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4564 KiB 4568 KiB 4572 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 219 KiB 229 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2806 KiB 2810 KiB 2812 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 240 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 39 KiB 48 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-14-g65bf80d763f6) finalized