Initializing AMReX (25.06-16-ga438488bf272)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-16-ga438488bf272) initialized Starting run at 05:30:17 UTC on 2025-06-18. Successfully read inputs file ... Castro git describe: 25.06-4-g95261d7fd AMReX git describe: 25.06-16-ga438488bf Microphysics git describe: 25.06-14-g3b767a4e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014768811 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.347871011 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.341381091 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.316090485 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.31201069 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.354422654 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.301733283 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.29586848 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295770265 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296662496 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295507561 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00779084 seconds Ending run at 05:30:21 UTC on 2025-06-18. Run time = 3.356288127 Run time without initialization = 3.170858251 Average number of zones advanced per microsecond: 0.827 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3511 ... 3.3545 ... 3.3563 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1553 2.1887 2.2511 67.07% Gravity::make_radial_gravity() 21 0.2893 0.3025 0.3145 9.37% check_for_negative_density() 10 0.04327 0.1085 0.1434 4.27% Castro::initData() 1 0.03716 0.07552 0.1168 3.48% Castro::estTimeStep() 21 0.02739 0.06603 0.1029 3.06% amrex::Copy() 193 0.07114 0.08391 0.0942 2.81% FabArray::ParallelCopy_finish() 41 0.03672 0.05583 0.08757 2.61% FabArray::setVal() 143 0.0584 0.06684 0.07368 2.20% Castro::reset_internal_energy(Fab) 1008 0.04193 0.04547 0.04658 1.39% Castro::normalize_species() 62 0.04508 0.04559 0.04629 1.38% FabArray::ParallelCopy_nowait() 41 0.03674 0.04053 0.04207 1.25% FillPatchIterator::Initialize 41 0.02838 0.03293 0.03534 1.05% StateData::FillBoundary(geom) 41 0.02955 0.03211 0.03473 1.03% Gravity::interpolate_monopole_grav() 21 0.02673 0.02726 0.0288 0.86% Castro::construct_new_gravity_source() 10 0.02246 0.02333 0.0246 0.73% Castro::computeTemp() 63 0.01659 0.01793 0.01856 0.55% Castro::initialize_do_advance() 10 0.01157 0.01627 0.01757 0.52% Castro::initialize_advance() 10 0.005322 0.01063 0.0137 0.41% FabArray::Saxpy() 20 0.01014 0.01211 0.01337 0.40% MultiFab::contains_nan() 20 0.01055 0.01155 0.01261 0.38% VisMF::Write(FabArray) 2 0.008894 0.009885 0.01235 0.37% Amr::writePlotFile() 2 0.007679 0.01037 0.01211 0.36% FabArray::setDomainBndry() 41 0.007478 0.009594 0.01084 0.32% Castro::initMFs() 1 0.006496 0.007748 0.01074 0.32% Castro::construct_old_gravity_source() 10 0.006709 0.008697 0.009486 0.28% StateData::define() 4 0.005409 0.006508 0.008555 0.25% Castro::construct_new_source() 50 0.005769 0.005985 0.006248 0.19% main() 1 0.003674 0.004213 0.004648 0.14% Gravity::get_new_grav_vector() 11 0.002969 0.003558 0.003915 0.12% Amr::coarseTimeStep() 10 0.001473 0.002411 0.003291 0.10% Gravity::get_old_grav_vector() 10 0.001683 0.002125 0.002716 0.08% Castro::finalize_do_advance() 10 0.0005971 0.001088 0.001514 0.05% AmrLevel::FillPatch() 41 0.0007932 0.001043 0.001286 0.04% Amr::timeStep() 10 0.0001357 0.0001998 0.0005103 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002783 0.0002928 0.0003101 0.01% Castro::do_advance_ctu() 10 0.0001401 0.0001613 0.0001929 0.01% Castro::clean_state() 62 0.0001347 0.000157 0.0001715 0.01% StateDataPhysBCFunct::() 41 0.0001041 0.0001145 0.0001266 0.00% FillPatchIterator::FillFromLevel0() 41 9.034e-05 0.0001014 0.0001119 0.00% Castro::do_old_sources() 10 8.385e-05 9.097e-05 0.0001012 0.00% FabArray::ParallelCopy() 41 8.125e-05 8.825e-05 9.343e-05 0.00% Amr::FinalizeInit() 1 3.707e-06 1.532e-05 8.944e-05 0.00% Castro::Castro() 1 5.309e-05 6.382e-05 8.198e-05 0.00% Castro::do_new_sources() 10 5.595e-05 6.672e-05 7.834e-05 0.00% Castro::construct_old_source() 50 5.376e-05 6.604e-05 7.759e-05 0.00% FillPatchSingleLevel 41 6.184e-05 6.706e-05 7.363e-05 0.00% Amr::defBaseLevel() 1 4.57e-05 5.342e-05 6.675e-05 0.00% Castro::apply_source_to_state() 20 4.09e-05 5.028e-05 5.744e-05 0.00% Castro::construct_old_gravity() 10 3.869e-05 4.543e-05 5.674e-05 0.00% Castro::advance() 10 4.457e-05 4.915e-05 5.3e-05 0.00% Castro::subcycle_advance_ctu() 10 4.016e-05 4.361e-05 5e-05 0.00% Castro::construct_new_gravity() 10 2.938e-05 3.594e-05 4.313e-05 0.00% Castro::expand_state() 10 2.223e-05 2.746e-05 3.771e-05 0.00% Castro::check_for_nan() 20 2.112e-05 2.547e-05 2.89e-05 0.00% Castro::post_timestep() 10 1.395e-05 1.795e-05 2.389e-05 0.00% Castro::post_init() 1 1.525e-05 1.802e-05 2.363e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.508e-06 1.154e-05 1.995e-05 0.00% Castro::computeNewDt() 9 8.542e-06 1.011e-05 1.354e-05 0.00% Amr::InitializeInit() 1 2.854e-06 4.07e-06 8.333e-06 0.00% Castro::computeInitialDt() 2 3.461e-06 3.886e-06 4.435e-06 0.00% Amr::initialInit() 1 1.667e-06 2.409e-06 3.811e-06 0.00% Amr::init() 1 1.89e-06 2.411e-06 3.55e-06 0.00% Other 256 0.01054 0.0159 0.01941 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.351 3.354 3.356 100.00% Amr::coarseTimeStep() 10 3.158 3.158 3.158 94.11% Amr::timeStep() 10 3.146 3.146 3.147 93.78% Castro::advance() 10 3.13 3.131 3.131 93.28% Castro::subcycle_advance_ctu() 10 3.055 3.059 3.073 91.55% Castro::do_advance_ctu() 10 3.055 3.059 3.073 91.54% Castro::construct_ctu_hydro_source() 10 2.315 2.318 2.32 69.12% Gravity::make_radial_gravity() 21 0.3056 0.3186 0.3275 9.76% AmrLevel::FillPatch() 41 0.1857 0.2043 0.2281 6.80% Gravity::get_new_grav_vector() 11 0.2059 0.2071 0.2087 6.22% Castro::construct_old_gravity() 10 0.1852 0.1975 0.2058 6.13% Gravity::get_old_grav_vector() 10 0.1844 0.1968 0.2051 6.11% FillPatchIterator::Initialize 41 0.1542 0.1715 0.1931 5.75% Amr::init() 1 0.1802 0.1836 0.1852 5.52% Castro::construct_new_gravity() 10 0.1833 0.1839 0.1849 5.51% Castro::initialize_do_advance() 10 0.1563 0.1635 0.175 5.21% Amr::initialInit() 1 0.1652 0.1685 0.1702 5.07% FillPatchIterator::FillFromLevel0() 41 0.113 0.1289 0.1572 4.69% FillPatchSingleLevel 41 0.1129 0.1288 0.1571 4.68% check_for_negative_density() 10 0.04327 0.1085 0.1434 4.27% Amr::InitializeInit() 1 0.06145 0.1008 0.1419 4.23% Amr::defBaseLevel() 1 0.06144 0.1008 0.1419 4.23% FabArray::ParallelCopy() 41 0.07862 0.09653 0.1245 3.71% Castro::expand_state() 10 0.1021 0.1103 0.1213 3.61% Castro::initData() 1 0.04108 0.07925 0.1203 3.59% Castro::clean_state() 62 0.1098 0.1146 0.1172 3.49% Amr::FinalizeInit() 1 0.02729 0.0677 0.1087 3.24% Castro::do_old_sources() 10 0.09118 0.09869 0.1063 3.17% Castro::estTimeStep() 21 0.02739 0.06603 0.1029 3.06% amrex::Copy() 193 0.07114 0.08391 0.0942 2.81% FabArray::ParallelCopy_finish() 41 0.03672 0.05583 0.08757 2.61% Castro::computeInitialDt() 2 0.002176 0.04267 0.08361 2.49% FabArray::setVal() 143 0.0584 0.06684 0.07368 2.20% Castro::initialize_advance() 10 0.0542 0.06788 0.07252 2.16% Castro::do_new_sources() 10 0.05767 0.06208 0.06626 1.97% Castro::computeTemp() 63 0.05881 0.0637 0.06545 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04221 0.04577 0.04689 1.40% Castro::reset_internal_energy(Fab) 1008 0.04193 0.04547 0.04658 1.39% Castro::normalize_species() 62 0.04508 0.04559 0.04629 1.38% FabArray::ParallelCopy_nowait() 41 0.03684 0.04062 0.04216 1.26% StateDataPhysBCFunct::() 41 0.02967 0.03222 0.03485 1.04% StateData::FillBoundary(geom) 41 0.02955 0.03211 0.03473 1.03% Castro::construct_new_source() 50 0.02826 0.02931 0.03085 0.92% Gravity::interpolate_monopole_grav() 21 0.02673 0.02726 0.0288 0.86% Castro::construct_new_gravity_source() 10 0.02246 0.02333 0.0246 0.73% Castro::post_init() 1 0.02408 0.02443 0.02457 0.73% Amr::writePlotFile() 2 0.02286 0.02299 0.02329 0.69% Castro::finalize_do_advance() 10 0.01186 0.01598 0.01946 0.58% Castro::post_timestep() 10 0.01464 0.01578 0.01658 0.49% Castro::Castro() 1 0.009837 0.0115 0.01498 0.45% Castro::apply_source_to_state() 20 0.01018 0.01216 0.01343 0.40% FabArray::Saxpy() 20 0.01014 0.01211 0.01337 0.40% Castro::check_for_nan() 20 0.01057 0.01157 0.01264 0.38% MultiFab::contains_nan() 20 0.01055 0.01155 0.01261 0.38% VisMF::Write(FabArray) 2 0.008894 0.009885 0.01235 0.37% FabArray::setDomainBndry() 41 0.007478 0.009594 0.01084 0.32% Castro::initMFs() 1 0.006496 0.007748 0.01074 0.32% Castro::construct_old_source() 50 0.006763 0.008763 0.009564 0.28% Castro::construct_old_gravity_source() 10 0.006709 0.008697 0.009486 0.28% AmrLevel::AmrLevel(dm) 1 0.005421 0.006519 0.008573 0.26% StateData::define() 4 0.005409 0.006508 0.008555 0.25% Castro::computeNewDt() 9 0.008467 0.008483 0.008498 0.25% Other 256 0.01524 0.02433 0.02968 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 36 B 42 B 59 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8642 KiB 8658 KiB 8661 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6740 KiB 6744 KiB 6750 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7127 KiB 7133 KiB 7139 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4548 KiB 4555 KiB 4575 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 226 KiB 252 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2796 KiB 2798 KiB 2801 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 241 KiB 248 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 42 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2024 KiB 2027 KiB 2027 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 75 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-16-ga438488bf272) finalized