Initializing AMReX (25.06-17-g11d0e8031b48)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-17-g11d0e8031b48) initialized Starting run at 05:17:50 UTC on 2025-06-19. Successfully read inputs file ... Castro git describe: 25.06-4-g95261d7fd AMReX git describe: 25.06-17-g11d0e8031 Microphysics git describe: 25.06-14-g3b767a4e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014771558 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.346289857 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.323112078 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.32549207 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316785679 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.365384496 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303917835 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296634036 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297309604 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296859538 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.29849567 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007658882 seconds Ending run at 05:17:53 UTC on 2025-06-19. Run time = 3.359107187 Run time without initialization = 3.182841599 Average number of zones advanced per microsecond: 0.824 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3578 ... 3.3585 ... 3.3591 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1536 2.2103 2.2851 68.03% Gravity::make_radial_gravity() 21 0.2936 0.3001 0.3178 9.46% check_for_negative_density() 10 0.03302 0.1111 0.1723 5.13% Castro::initData() 1 0.03858 0.07197 0.1077 3.21% Castro::estTimeStep() 21 0.03006 0.06347 0.09317 2.77% amrex::Copy() 193 0.06885 0.08133 0.08836 2.63% FabArray::ParallelCopy_finish() 41 0.038 0.04714 0.07974 2.37% FabArray::setVal() 143 0.05205 0.06529 0.07033 2.09% Castro::normalize_species() 62 0.04607 0.04694 0.04873 1.45% Castro::reset_internal_energy(Fab) 1008 0.04243 0.04588 0.04752 1.41% FabArray::ParallelCopy_nowait() 41 0.03703 0.04228 0.04458 1.33% FillPatchIterator::Initialize 41 0.02901 0.03342 0.03532 1.05% StateData::FillBoundary(geom) 41 0.02951 0.03255 0.03455 1.03% Gravity::interpolate_monopole_grav() 21 0.0266 0.02693 0.02737 0.81% Castro::construct_new_gravity_source() 10 0.02264 0.02402 0.02607 0.78% Castro::computeTemp() 63 0.01664 0.01808 0.01877 0.56% Castro::initialize_do_advance() 10 0.01224 0.01664 0.0177 0.53% FabArray::Saxpy() 20 0.01029 0.01259 0.01373 0.41% Castro::initialize_advance() 10 0.005388 0.01051 0.01352 0.40% VisMF::Write(FabArray) 2 0.009324 0.009845 0.0122 0.36% MultiFab::contains_nan() 20 0.01011 0.01086 0.01183 0.35% FabArray::setDomainBndry() 41 0.007761 0.0103 0.01159 0.35% Amr::writePlotFile() 2 0.007601 0.01011 0.01064 0.32% Castro::construct_old_gravity_source() 10 0.006944 0.009539 0.01039 0.31% Castro::initMFs() 1 0.006541 0.007113 0.008519 0.25% Castro::construct_new_source() 50 0.005425 0.00611 0.006306 0.19% main() 1 0.003535 0.004089 0.004324 0.13% Gravity::get_new_grav_vector() 11 0.002695 0.003582 0.004081 0.12% Gravity::get_old_grav_vector() 10 0.001492 0.002153 0.002685 0.08% Amr::coarseTimeStep() 10 0.0009047 0.001406 0.002509 0.07% AmrLevel::FillPatch() 41 0.0008585 0.001093 0.001284 0.04% Castro::finalize_do_advance() 10 0.0005788 0.001074 0.001197 0.04% Amr::timeStep() 10 0.0001259 0.000179 0.0003899 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002841 0.0002971 0.0003181 0.01% Castro::do_advance_ctu() 10 0.0001264 0.0001594 0.0001807 0.01% Castro::clean_state() 62 0.0001305 0.0001427 0.0001542 0.00% StateDataPhysBCFunct::() 41 0.0001017 0.0001098 0.0001191 0.00% FillPatchIterator::FillFromLevel0() 41 9.114e-05 9.84e-05 0.0001048 0.00% Castro::Castro() 1 4.603e-05 7.079e-05 0.0001011 0.00% Castro::do_old_sources() 10 6.313e-05 8.819e-05 0.0001006 0.00% FabArray::ParallelCopy() 41 7.52e-05 8.458e-05 9.188e-05 0.00% Castro::construct_old_source() 50 4.401e-05 6.852e-05 8.464e-05 0.00% Castro::do_new_sources() 10 4.581e-05 6.348e-05 7.42e-05 0.00% FillPatchSingleLevel 41 6.53e-05 6.829e-05 7.311e-05 0.00% Amr::FinalizeInit() 1 3.981e-06 1.293e-05 7.204e-05 0.00% Castro::advance() 10 4.311e-05 5.352e-05 6.846e-05 0.00% Castro::apply_source_to_state() 20 3.851e-05 5.002e-05 5.729e-05 0.00% Castro::subcycle_advance_ctu() 10 3.931e-05 4.58e-05 5.132e-05 0.00% Amr::defBaseLevel() 1 4.041e-05 4.518e-05 5.112e-05 0.00% Castro::construct_old_gravity() 10 3.439e-05 4.183e-05 4.979e-05 0.00% Castro::construct_new_gravity() 10 3.128e-05 3.519e-05 4.219e-05 0.00% Castro::expand_state() 10 2.26e-05 2.77e-05 3.515e-05 0.00% Castro::check_for_nan() 20 2.242e-05 2.456e-05 2.764e-05 0.00% Castro::post_init() 1 1.493e-05 1.717e-05 2.174e-05 0.00% Castro::post_timestep() 10 1.327e-05 1.554e-05 1.738e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.941e-06 9.662e-06 1.231e-05 0.00% Castro::computeNewDt() 9 8.811e-06 9.634e-06 1.09e-05 0.00% Amr::InitializeInit() 1 2.436e-06 3.229e-06 6.21e-06 0.00% Castro::computeInitialDt() 2 3.494e-06 4.071e-06 4.699e-06 0.00% Amr::initialInit() 1 1.36e-06 2.051e-06 2.772e-06 0.00% Amr::init() 1 1.651e-06 2.086e-06 2.74e-06 0.00% Other 260 0.01607 0.01886 0.02116 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.358 3.358 3.359 100.00% Amr::coarseTimeStep() 10 3.171 3.171 3.171 94.40% Amr::timeStep() 10 3.159 3.16 3.16 94.08% Castro::advance() 10 3.143 3.144 3.144 93.59% Castro::subcycle_advance_ctu() 10 3.069 3.073 3.087 91.89% Castro::do_advance_ctu() 10 3.068 3.073 3.087 91.89% Castro::construct_ctu_hydro_source() 10 2.339 2.342 2.346 69.85% Gravity::make_radial_gravity() 21 0.3105 0.3172 0.3321 9.89% Gravity::get_new_grav_vector() 11 0.2109 0.2121 0.2132 6.35% AmrLevel::FillPatch() 41 0.1843 0.1991 0.2106 6.27% Castro::construct_old_gravity() 10 0.1828 0.1878 0.1992 5.93% Gravity::get_old_grav_vector() 10 0.1821 0.1871 0.1986 5.91% Castro::construct_new_gravity() 10 0.1852 0.1859 0.1866 5.55% FillPatchIterator::Initialize 41 0.1553 0.1661 0.1857 5.53% Amr::init() 1 0.1747 0.1755 0.176 5.24% check_for_negative_density() 10 0.03302 0.1111 0.1723 5.13% Castro::initialize_do_advance() 10 0.156 0.1648 0.1681 5.00% Amr::initialInit() 1 0.1598 0.1605 0.1613 4.80% FillPatchIterator::FillFromLevel0() 41 0.1134 0.1224 0.1489 4.43% FillPatchSingleLevel 41 0.1133 0.1223 0.1488 4.43% Amr::InitializeInit() 1 0.05913 0.09357 0.1299 3.87% Amr::defBaseLevel() 1 0.05912 0.09357 0.1299 3.87% Castro::expand_state() 10 0.1017 0.1114 0.1206 3.59% Castro::clean_state() 62 0.1106 0.1164 0.1188 3.54% FabArray::ParallelCopy() 41 0.08081 0.08959 0.1169 3.48% Castro::initData() 1 0.0424 0.07583 0.1112 3.31% Amr::FinalizeInit() 1 0.03029 0.06694 0.1007 3.00% Castro::do_old_sources() 10 0.09218 0.09525 0.09867 2.94% Castro::estTimeStep() 21 0.03006 0.06347 0.09317 2.77% amrex::Copy() 193 0.06885 0.08133 0.08836 2.63% FabArray::ParallelCopy_finish() 41 0.038 0.04714 0.07974 2.37% Castro::computeInitialDt() 2 0.002352 0.03913 0.07282 2.17% Castro::initialize_advance() 10 0.05326 0.06765 0.07202 2.14% FabArray::setVal() 143 0.05205 0.06529 0.07033 2.09% Castro::do_new_sources() 10 0.05817 0.06362 0.06863 2.04% Castro::computeTemp() 63 0.05936 0.06426 0.0666 1.98% Castro::normalize_species() 62 0.04607 0.04694 0.04873 1.45% Castro::reset_internal_energy(MultiFab) 63 0.04272 0.04618 0.04783 1.42% Castro::reset_internal_energy(Fab) 1008 0.04243 0.04588 0.04752 1.41% FabArray::ParallelCopy_nowait() 41 0.03712 0.04237 0.04466 1.33% StateDataPhysBCFunct::() 41 0.02961 0.03266 0.03466 1.03% StateData::FillBoundary(geom) 41 0.02951 0.03255 0.03455 1.03% Castro::construct_new_source() 50 0.02857 0.03013 0.03237 0.96% Castro::post_init() 1 0.02719 0.02744 0.02768 0.82% Gravity::interpolate_monopole_grav() 21 0.0266 0.02693 0.02737 0.81% Castro::construct_new_gravity_source() 10 0.02264 0.02402 0.02607 0.78% Amr::writePlotFile() 2 0.02248 0.02271 0.02286 0.68% Castro::finalize_do_advance() 10 0.01129 0.01689 0.02207 0.66% Castro::post_timestep() 10 0.01517 0.0158 0.01606 0.48% Castro::apply_source_to_state() 20 0.01033 0.01264 0.01378 0.41% FabArray::Saxpy() 20 0.01029 0.01259 0.01373 0.41% VisMF::Write(FabArray) 2 0.009324 0.009845 0.0122 0.36% Castro::Castro() 1 0.01055 0.01101 0.01198 0.36% Castro::check_for_nan() 20 0.01014 0.01088 0.01186 0.35% MultiFab::contains_nan() 20 0.01011 0.01086 0.01183 0.35% FabArray::setDomainBndry() 41 0.007761 0.0103 0.01159 0.35% Castro::construct_old_source() 50 0.006988 0.009607 0.01046 0.31% Castro::construct_old_gravity_source() 10 0.006944 0.009539 0.01039 0.31% Castro::computeNewDt() 9 0.008393 0.008534 0.008568 0.26% Castro::initMFs() 1 0.006541 0.007113 0.008519 0.25% AmrLevel::AmrLevel(dm) 1 0.005548 0.005902 0.006543 0.19% Other 260 0.0207 0.02455 0.02772 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 36 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8669 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6757 KiB 6762 KiB 6766 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4564 KiB 4570 KiB 4593 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 223 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2805 KiB 2807 KiB 2808 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 240 KiB 251 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-17-g11d0e8031b48) finalized