Initializing AMReX (25.06-18-gdf1e7d01d26d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-18-gdf1e7d01d26d) initialized Starting run at 05:31:36 UTC on 2025-06-20. Successfully read inputs file ... Castro git describe: 25.06-4-g95261d7fd AMReX git describe: 25.06-18-gdf1e7d01d Microphysics git describe: 25.06-14-g3b767a4e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014549206 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.337374025 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.331910714 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315042594 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.315186459 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.374913565 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305744854 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295816263 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295110311 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296400287 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296581609 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007806523 seconds Ending run at 05:31:40 UTC on 2025-06-20. Run time = 3.387785991 Run time without initialization = 3.176896911 Average number of zones advanced per microsecond: 0.825 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3864 ... 3.3870 ... 3.3878 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1502 2.1994 2.2668 66.91% Gravity::make_radial_gravity() 21 0.2927 0.3035 0.3181 9.39% check_for_negative_density() 10 0.02313 0.09861 0.1415 4.18% Castro::initData() 1 0.03872 0.07102 0.1044 3.08% FabArray::ParallelCopy_finish() 41 0.04054 0.06158 0.1004 2.96% Castro::estTimeStep() 21 0.02901 0.06283 0.09858 2.91% amrex::Copy() 193 0.06251 0.08008 0.09443 2.79% FabArray::setVal() 143 0.05215 0.06656 0.07446 2.20% Castro::reset_internal_energy(Fab) 1008 0.04332 0.04559 0.04699 1.39% Castro::normalize_species() 62 0.0451 0.04589 0.0469 1.38% Amr::InitAmr() 1 0.0001985 0.005583 0.0432 1.28% DistributionMapping::LeastUsedCPUs() 1 3.143e-05 0.03716 0.0431 1.27% FabArray::ParallelCopy_nowait() 41 0.03506 0.0403 0.04279 1.26% StateData::FillBoundary(geom) 41 0.0296 0.03206 0.03609 1.07% FillPatchIterator::Initialize 41 0.02808 0.03281 0.03605 1.06% Gravity::interpolate_monopole_grav() 21 0.02638 0.02735 0.02948 0.87% Castro::construct_new_gravity_source() 10 0.02218 0.02382 0.02616 0.77% Castro::computeTemp() 63 0.01757 0.01803 0.0185 0.55% Castro::initialize_do_advance() 10 0.01176 0.01629 0.01778 0.52% Castro::initialize_advance() 10 0.005291 0.01081 0.01416 0.42% FabArray::Saxpy() 20 0.01062 0.01183 0.01328 0.39% MultiFab::contains_nan() 20 0.01057 0.01147 0.01282 0.38% Amr::writePlotFile() 2 0.007623 0.01046 0.01261 0.37% VisMF::Write(FabArray) 2 0.008804 0.009769 0.01232 0.36% FabArray::setDomainBndry() 41 0.00763 0.009657 0.01075 0.32% Castro::construct_old_gravity_source() 10 0.0067 0.008687 0.009448 0.28% Castro::initMFs() 1 0.006555 0.006925 0.008839 0.26% Castro::construct_new_source() 50 0.005488 0.00591 0.006196 0.18% main() 1 0.004117 0.004441 0.00464 0.14% Gravity::get_new_grav_vector() 11 0.002789 0.003383 0.003661 0.11% Gravity::get_old_grav_vector() 10 0.001414 0.001994 0.00248 0.07% Amr::coarseTimeStep() 10 0.0006865 0.001336 0.00196 0.06% Castro::finalize_do_advance() 10 0.0006263 0.001185 0.001512 0.04% AmrLevel::FillPatch() 41 0.0008091 0.001055 0.001247 0.04% Amr::timeStep() 10 0.0001395 0.0001897 0.0004531 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002729 0.0002823 0.0002969 0.01% Castro::do_advance_ctu() 10 0.0001296 0.0001634 0.0002233 0.01% Castro::clean_state() 62 0.0001274 0.0001445 0.0001513 0.00% FillPatchIterator::FillFromLevel0() 41 8.559e-05 9.83e-05 0.0001222 0.00% StateDataPhysBCFunct::() 41 9.65e-05 0.000108 0.0001159 0.00% FabArray::ParallelCopy() 41 8.813e-05 9.659e-05 0.0001136 0.00% Amr::FinalizeInit() 1 3.219e-06 1.737e-05 0.0001048 0.00% Castro::Castro() 1 4.866e-05 7.925e-05 0.0001001 0.00% Castro::do_old_sources() 10 8.015e-05 8.893e-05 9.696e-05 0.00% FillPatchSingleLevel 41 6.646e-05 7.436e-05 8.235e-05 0.00% Castro::subcycle_advance_ctu() 10 3.741e-05 4.733e-05 7.349e-05 0.00% Castro::construct_old_source() 50 5.22e-05 6.456e-05 7.277e-05 0.00% Castro::do_new_sources() 10 4.902e-05 5.966e-05 6.797e-05 0.00% Castro::construct_old_gravity() 10 3.514e-05 4.117e-05 5.6e-05 0.00% Castro::apply_source_to_state() 20 4.119e-05 4.702e-05 5.312e-05 0.00% Castro::advance() 10 4.151e-05 4.699e-05 5.052e-05 0.00% Castro::construct_new_gravity() 10 3.153e-05 3.797e-05 4.953e-05 0.00% Amr::defBaseLevel() 1 2.853e-05 3.728e-05 4.221e-05 0.00% Castro::check_for_nan() 20 1.996e-05 2.412e-05 2.886e-05 0.00% Castro::expand_state() 10 1.715e-05 2.285e-05 2.812e-05 0.00% Castro::post_timestep() 10 1.427e-05 1.655e-05 2.082e-05 0.00% Castro::post_init() 1 1.542e-05 1.69e-05 2.04e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 7.909e-06 1.021e-05 1.622e-05 0.00% Castro::computeNewDt() 9 8.438e-06 9.79e-06 1.117e-05 0.00% Amr::InitializeInit() 1 2.381e-06 3.934e-06 7.428e-06 0.00% Castro::computeInitialDt() 2 3.098e-06 4.053e-06 5.409e-06 0.00% Amr::init() 1 1.765e-06 2.233e-06 2.802e-06 0.00% Amr::initialInit() 1 1.535e-06 1.949e-06 2.488e-06 0.00% Other 258 0.01578 0.01776 0.01946 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.386 3.387 3.388 100.00% Amr::coarseTimeStep() 10 3.164 3.165 3.165 93.41% Amr::timeStep() 10 3.153 3.154 3.154 93.11% Castro::advance() 10 3.137 3.137 3.138 92.62% Castro::subcycle_advance_ctu() 10 3.061 3.066 3.08 90.92% Castro::do_advance_ctu() 10 3.061 3.066 3.08 90.92% Castro::construct_ctu_hydro_source() 10 2.312 2.319 2.325 68.62% Gravity::make_radial_gravity() 21 0.3084 0.3196 0.3314 9.78% AmrLevel::FillPatch() 41 0.189 0.2081 0.2251 6.65% Amr::init() 1 0.1674 0.2046 0.2105 6.21% Gravity::get_new_grav_vector() 11 0.2075 0.2086 0.2101 6.20% Castro::construct_old_gravity() 10 0.1898 0.1969 0.2066 6.10% Gravity::get_old_grav_vector() 10 0.1891 0.1962 0.206 6.08% FillPatchIterator::Initialize 41 0.1578 0.1769 0.2012 5.94% Amr::initialInit() 1 0.1527 0.1898 0.1958 5.78% Castro::construct_new_gravity() 10 0.1854 0.1862 0.1872 5.53% Amr::InitializeInit() 1 0.05891 0.1289 0.1685 4.97% Amr::defBaseLevel() 1 0.0589 0.1289 0.1685 4.97% Castro::initialize_do_advance() 10 0.1582 0.1624 0.1667 4.92% FillPatchIterator::FillFromLevel0() 41 0.1185 0.1344 0.1655 4.89% FillPatchSingleLevel 41 0.1184 0.1343 0.1654 4.88% check_for_negative_density() 10 0.02313 0.09861 0.1415 4.18% FabArray::ParallelCopy() 41 0.08356 0.1021 0.1357 4.00% Castro::expand_state() 10 0.104 0.1091 0.1188 3.51% Castro::clean_state() 62 0.1128 0.1152 0.1177 3.47% Castro::do_old_sources() 10 0.09146 0.1015 0.1126 3.32% Castro::initData() 1 0.04265 0.0748 0.1078 3.18% FabArray::ParallelCopy_finish() 41 0.04054 0.06158 0.1004 2.96% Castro::estTimeStep() 21 0.02901 0.06283 0.09858 2.91% amrex::Copy() 193 0.06251 0.08008 0.09443 2.79% Amr::FinalizeInit() 1 0.02571 0.06083 0.09384 2.77% FabArray::setVal() 143 0.05215 0.06656 0.07446 2.20% Castro::initialize_advance() 10 0.05341 0.06814 0.07344 2.17% Castro::computeInitialDt() 2 0.00212 0.03678 0.06967 2.06% Castro::do_new_sources() 10 0.05961 0.0624 0.06883 2.03% Castro::computeTemp() 63 0.06117 0.0639 0.06575 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04359 0.04587 0.04728 1.40% Castro::reset_internal_energy(Fab) 1008 0.04332 0.04559 0.04699 1.39% Castro::normalize_species() 62 0.0451 0.04589 0.0469 1.38% Amr::InitAmr() 1 0.0002017 0.005586 0.0432 1.28% DistributionMapping::SFCProcessorMapDoIt() 1 4.025e-05 0.03717 0.04311 1.27% DistributionMapping::LeastUsedCPUs() 1 3.143e-05 0.03716 0.0431 1.27% FabArray::ParallelCopy_nowait() 41 0.03518 0.0404 0.04292 1.27% StateDataPhysBCFunct::() 41 0.02971 0.03217 0.0362 1.07% StateData::FillBoundary(geom) 41 0.0296 0.03206 0.03609 1.07% Castro::construct_new_source() 50 0.02818 0.02973 0.0323 0.95% Gravity::interpolate_monopole_grav() 21 0.02638 0.02735 0.02948 0.87% Castro::construct_new_gravity_source() 10 0.02218 0.02382 0.02616 0.77% Castro::post_init() 1 0.02339 0.02363 0.02382 0.70% Amr::writePlotFile() 2 0.02259 0.02271 0.02316 0.68% Castro::finalize_do_advance() 10 0.01157 0.01884 0.02281 0.67% Castro::post_timestep() 10 0.01573 0.016 0.01675 0.49% Castro::apply_source_to_state() 20 0.01066 0.01188 0.01334 0.39% FabArray::Saxpy() 20 0.01062 0.01183 0.01328 0.39% Castro::check_for_nan() 20 0.0106 0.01149 0.01284 0.38% MultiFab::contains_nan() 20 0.01057 0.01147 0.01282 0.38% VisMF::Write(FabArray) 2 0.008804 0.009769 0.01232 0.36% Castro::Castro() 1 0.01057 0.0113 0.01216 0.36% FabArray::setDomainBndry() 41 0.00763 0.009657 0.01075 0.32% Castro::construct_old_source() 50 0.006752 0.008752 0.009521 0.28% Castro::construct_old_gravity_source() 10 0.0067 0.008687 0.009448 0.28% Castro::initMFs() 1 0.006555 0.006925 0.008839 0.26% Castro::computeNewDt() 9 0.008388 0.008411 0.008426 0.25% Other 258 0.02558 0.02816 0.03096 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8553 KiB 8562 KiB 8566 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6686 KiB 6693 KiB 6697 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7044 KiB 7052 KiB 7054 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4515 KiB 4522 KiB 4545 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 209 KiB 226 KiB 246 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2774 KiB 2778 KiB 2779 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 240 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 43 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2002 KiB 2004 KiB 2005 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 74 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-18-gdf1e7d01d26d) finalized