Initializing AMReX (25.06-21-ga21af25a11ca)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-21-ga21af25a11ca) initialized Starting run at 05:32:51 UTC on 2025-06-23. Successfully read inputs file ... Castro git describe: 25.06-10-g7f150e382 AMReX git describe: 25.06-21-ga21af25a1 Microphysics git describe: 25.06-15-g3eafe15c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014324781 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.360066953 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.336626445 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.342783742 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.323068112 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.36423981 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303042415 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296334764 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296747051 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295958492 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296875429 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007842657 seconds Ending run at 05:32:54 UTC on 2025-06-23. Run time = 3.400524639 Run time without initialization = 3.22889458 Average number of zones advanced per microsecond: 0.812 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.3995 ... 3.4003 ... 3.4009 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1293 2.1937 2.2743 66.87% Gravity::make_radial_gravity() 21 0.3028 0.3194 0.3349 9.85% check_for_negative_density() 10 0.0567 0.1404 0.206 6.06% Castro::initData() 1 0.03879 0.07226 0.109 3.20% Castro::estTimeStep() 21 0.02319 0.065 0.1016 2.99% FabArray::ParallelCopy_finish() 41 0.04447 0.06059 0.09546 2.81% amrex::Copy() 193 0.06757 0.07913 0.08817 2.59% FabArray::setVal() 143 0.05571 0.06651 0.07356 2.16% FabArray::ParallelCopy_nowait() 41 0.03563 0.04122 0.04942 1.45% Castro::normalize_species() 62 0.0451 0.04632 0.04717 1.39% Castro::reset_internal_energy(Fab) 1008 0.04213 0.04442 0.04606 1.35% FillPatchIterator::Initialize 41 0.02852 0.03258 0.03782 1.11% StateData::FillBoundary(geom) 41 0.03048 0.03223 0.03493 1.03% Gravity::interpolate_monopole_grav() 21 0.02624 0.02695 0.02755 0.81% Castro::computeTemp() 63 0.01709 0.01887 0.02754 0.81% Castro::construct_new_gravity_source() 10 0.02192 0.02339 0.02465 0.72% Castro::initialize_do_advance() 10 0.01145 0.01655 0.02275 0.67% FabArray::setDomainBndry() 41 0.007352 0.01054 0.01636 0.48% MultiFab::contains_nan() 20 0.01042 0.01204 0.01555 0.46% Castro::initialize_advance() 10 0.00524 0.01064 0.01421 0.42% FabArray::Saxpy() 20 0.01036 0.01179 0.0128 0.38% Amr::writePlotFile() 2 0.007709 0.0103 0.01211 0.36% VisMF::Write(FabArray) 2 0.008819 0.009624 0.01198 0.35% Castro::construct_old_gravity_source() 10 0.006218 0.008435 0.009012 0.26% Castro::initMFs() 1 0.006489 0.007023 0.007814 0.23% Castro::construct_new_source() 50 0.00559 0.00595 0.00628 0.18% main() 1 0.00395 0.004251 0.004771 0.14% Gravity::get_old_grav_vector() 10 0.001497 0.002186 0.004173 0.12% Gravity::get_new_grav_vector() 11 0.002802 0.003391 0.003789 0.11% Amr::coarseTimeStep() 10 0.001563 0.00191 0.003003 0.09% Castro::finalize_do_advance() 10 0.0005979 0.001214 0.001667 0.05% AmrLevel::FillPatch() 41 0.0008025 0.001027 0.001218 0.04% Amr::timeStep() 10 0.000132 0.0001888 0.0004543 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002735 0.0002847 0.0003027 0.01% Castro::do_advance_ctu() 10 0.0001414 0.0001652 0.0001911 0.01% Castro::clean_state() 62 0.0001286 0.000152 0.0001732 0.01% StateDataPhysBCFunct::() 41 8.791e-05 0.0001139 0.0001413 0.00% FillPatchIterator::FillFromLevel0() 41 9.161e-05 0.0001095 0.0001306 0.00% FabArray::ParallelCopy() 41 8.717e-05 9.784e-05 0.0001092 0.00% Castro::do_old_sources() 10 8.528e-05 9.544e-05 0.0001047 0.00% FillPatchSingleLevel 41 6.656e-05 7.55e-05 8.506e-05 0.00% Amr::FinalizeInit() 1 4.143e-06 1.368e-05 7.439e-05 0.00% Castro::do_new_sources() 10 5.657e-05 6.27e-05 7.421e-05 0.00% Castro::Castro() 1 5.003e-05 6.238e-05 7.277e-05 0.00% Castro::construct_old_source() 50 5.556e-05 6.367e-05 7.099e-05 0.00% Castro::construct_old_gravity() 10 3.891e-05 4.804e-05 5.847e-05 0.00% Castro::subcycle_advance_ctu() 10 3.979e-05 4.844e-05 5.832e-05 0.00% Castro::advance() 10 4.304e-05 4.81e-05 5.735e-05 0.00% Castro::apply_source_to_state() 20 3.924e-05 4.742e-05 5.59e-05 0.00% Castro::expand_state() 10 1.981e-05 2.586e-05 4.497e-05 0.00% Castro::construct_new_gravity() 10 3.182e-05 3.681e-05 4.389e-05 0.00% Amr::defBaseLevel() 1 3.108e-05 3.401e-05 3.618e-05 0.00% Castro::check_for_nan() 20 2.251e-05 2.585e-05 3.557e-05 0.00% Castro::post_init() 1 1.454e-05 1.677e-05 2.2e-05 0.00% Castro::post_timestep() 10 1.423e-05 1.67e-05 1.911e-05 0.00% Castro::computeNewDt() 9 9.062e-06 9.561e-06 1.076e-05 0.00% Amr::init() 1 1.796e-06 3.276e-06 1.066e-05 0.00% Amr::InitializeInit() 1 2.466e-06 3.405e-06 6.301e-06 0.00% Castro::computeInitialDt() 2 3.181e-06 3.802e-06 4.833e-06 0.00% Amr::initialInit() 1 1.221e-06 1.771e-06 2.179e-06 0.00% Other 261 0.01606 0.01865 0.02065 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.4 3.4 3.401 100.00% Amr::coarseTimeStep() 10 3.216 3.216 3.216 94.57% Amr::timeStep() 10 3.203 3.205 3.205 94.24% Castro::advance() 10 3.188 3.189 3.189 93.77% Castro::subcycle_advance_ctu() 10 3.112 3.118 3.133 92.12% Castro::do_advance_ctu() 10 3.112 3.118 3.133 92.11% Castro::construct_ctu_hydro_source() 10 2.35 2.355 2.358 69.32% Gravity::make_radial_gravity() 21 0.3181 0.3349 0.3478 10.23% AmrLevel::FillPatch() 41 0.1981 0.2104 0.2235 6.57% Castro::construct_old_gravity() 10 0.1943 0.2065 0.2176 6.40% Gravity::get_old_grav_vector() 10 0.1929 0.2056 0.217 6.38% Gravity::get_new_grav_vector() 11 0.2108 0.2115 0.2123 6.24% check_for_negative_density() 10 0.0567 0.1404 0.206 6.06% FillPatchIterator::Initialize 41 0.1644 0.1776 0.1993 5.86% Castro::construct_new_gravity() 10 0.1886 0.1891 0.1897 5.58% Castro::initialize_do_advance() 10 0.1691 0.1731 0.1806 5.31% Amr::init() 1 0.1709 0.1715 0.172 5.06% FillPatchIterator::FillFromLevel0() 41 0.1207 0.1345 0.1634 4.81% FillPatchSingleLevel 41 0.1206 0.1344 0.1633 4.80% Amr::initialInit() 1 0.1562 0.1569 0.1576 4.63% FabArray::ParallelCopy() 41 0.08555 0.102 0.1313 3.86% Castro::expand_state() 10 0.1112 0.1182 0.1309 3.85% Amr::InitializeInit() 1 0.05931 0.09349 0.1306 3.84% Amr::defBaseLevel() 1 0.05931 0.09349 0.1305 3.84% Castro::clean_state() 62 0.1108 0.1153 0.126 3.70% Castro::initData() 1 0.04235 0.07606 0.1123 3.30% Castro::do_old_sources() 10 0.09439 0.09797 0.1041 3.06% Castro::estTimeStep() 21 0.02319 0.065 0.1016 2.99% Amr::FinalizeInit() 1 0.02613 0.06342 0.09712 2.86% FabArray::ParallelCopy_finish() 41 0.04447 0.06059 0.09546 2.81% amrex::Copy() 193 0.06757 0.07913 0.08817 2.59% Castro::computeTemp() 63 0.05963 0.06358 0.07363 2.17% FabArray::setVal() 143 0.05571 0.06651 0.07356 2.16% Castro::computeInitialDt() 2 0.002156 0.03956 0.07309 2.15% Castro::initialize_advance() 10 0.05196 0.06738 0.07289 2.14% Castro::do_new_sources() 10 0.05637 0.06172 0.06657 1.96% FabArray::ParallelCopy_nowait() 41 0.03575 0.04131 0.04951 1.46% Castro::normalize_species() 62 0.0451 0.04632 0.04717 1.39% Castro::reset_internal_energy(MultiFab) 63 0.04241 0.0447 0.04634 1.36% Castro::reset_internal_energy(Fab) 1008 0.04213 0.04442 0.04606 1.35% StateDataPhysBCFunct::() 41 0.0306 0.03234 0.03505 1.03% StateData::FillBoundary(geom) 41 0.03048 0.03223 0.03493 1.03% Castro::construct_new_source() 50 0.02751 0.02934 0.03093 0.91% Gravity::interpolate_monopole_grav() 21 0.02624 0.02695 0.02755 0.81% Castro::construct_new_gravity_source() 10 0.02192 0.02339 0.02465 0.72% Castro::post_init() 1 0.02301 0.02342 0.02362 0.69% Amr::writePlotFile() 2 0.0224 0.02256 0.02291 0.67% Castro::finalize_do_advance() 10 0.01293 0.01788 0.02251 0.66% FabArray::setDomainBndry() 41 0.007352 0.01054 0.01636 0.48% Castro::post_timestep() 10 0.0153 0.01577 0.01624 0.48% Castro::check_for_nan() 20 0.01045 0.01206 0.01558 0.46% MultiFab::contains_nan() 20 0.01042 0.01204 0.01555 0.46% Castro::apply_source_to_state() 20 0.01041 0.01183 0.01285 0.38% FabArray::Saxpy() 20 0.01036 0.01179 0.0128 0.38% VisMF::Write(FabArray) 2 0.008819 0.009624 0.01198 0.35% Castro::Castro() 1 0.01002 0.01085 0.01183 0.35% Castro::construct_old_source() 50 0.006274 0.008498 0.009077 0.27% Castro::construct_old_gravity_source() 10 0.006218 0.008435 0.009012 0.26% Castro::computeNewDt() 9 0.008776 0.008793 0.008811 0.26% Castro::initMFs() 1 0.006489 0.007023 0.007814 0.23% Other 261 0.02608 0.02994 0.0332 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8669 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6770 KiB 6775 KiB 6780 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4572 KiB 4580 KiB 4604 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 220 KiB 234 KiB 253 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2809 KiB 2812 KiB 2813 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 238 KiB 251 KiB 261 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 46 KiB 62 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 77 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-21-ga21af25a11ca) finalized