Initializing AMReX (25.06-22-g1d307c2c661a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a) initialized Starting run at 05:19:54 UTC on 2025-06-24. Successfully read inputs file ... Castro git describe: 25.06-11-g174e2d91f AMReX git describe: 25.06-22-g1d307c2c6 Microphysics git describe: 25.06-18-gf7f1223e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01475465 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.342558933 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.333776902 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.311220733 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.310656339 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.360782345 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.331974766 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299385539 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.293330042 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296267197 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.294482395 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007704929 seconds Ending run at 05:19:57 UTC on 2025-06-24. Run time = 3.372953324 Run time without initialization = 3.187429249 Average number of zones advanced per microsecond: 0.822 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3718 ... 3.3727 ... 3.3730 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1619 2.2159 2.2794 67.58% Gravity::make_radial_gravity() 21 0.2836 0.2944 0.3078 9.13% check_for_negative_density() 10 0.04869 0.1179 0.1712 5.08% Castro::initData() 1 0.03713 0.07301 0.121 3.59% Castro::estTimeStep() 21 0.0325 0.07732 0.1179 3.50% amrex::Copy() 193 0.0637 0.07755 0.08611 2.55% FabArray::ParallelCopy_finish() 41 0.03535 0.04655 0.0823 2.44% FabArray::setVal() 143 0.05402 0.06636 0.07242 2.15% Castro::normalize_species() 62 0.04478 0.04607 0.04846 1.44% Castro::reset_internal_energy(Fab) 1008 0.04177 0.0455 0.04761 1.41% FabArray::ParallelCopy_nowait() 41 0.03506 0.04084 0.04299 1.27% StateData::FillBoundary(geom) 41 0.02951 0.03219 0.03664 1.09% FillPatchIterator::Initialize 41 0.02754 0.03208 0.03435 1.02% Gravity::interpolate_monopole_grav() 21 0.02641 0.02664 0.0269 0.80% Castro::construct_new_gravity_source() 10 0.02308 0.02441 0.02633 0.78% Castro::computeTemp() 63 0.01677 0.01802 0.01867 0.55% Castro::initialize_do_advance() 10 0.01161 0.01632 0.01768 0.52% Castro::initialize_advance() 10 0.005345 0.01074 0.01396 0.41% FabArray::Saxpy() 20 0.01071 0.01244 0.01358 0.40% Amr::writePlotFile() 2 0.007612 0.01039 0.01321 0.39% MultiFab::contains_nan() 20 0.01048 0.01135 0.0124 0.37% VisMF::Write(FabArray) 2 0.00835 0.009851 0.0124 0.37% FabArray::setDomainBndry() 41 0.007422 0.009766 0.01129 0.33% Castro::construct_old_gravity_source() 10 0.007085 0.009446 0.009901 0.29% Castro::initMFs() 1 0.006399 0.006791 0.008258 0.24% Castro::construct_new_source() 50 0.005552 0.005963 0.006186 0.18% main() 1 0.004228 0.004273 0.004338 0.13% Gravity::get_new_grav_vector() 11 0.002848 0.003441 0.003905 0.12% Amr::coarseTimeStep() 10 0.001102 0.002573 0.003697 0.11% Gravity::get_old_grav_vector() 10 0.001621 0.002001 0.002423 0.07% Castro::finalize_do_advance() 10 0.0005764 0.001118 0.001352 0.04% AmrLevel::FillPatch() 41 0.0007391 0.001134 0.001247 0.04% Amr::timeStep() 10 0.0001433 0.0001905 0.0004246 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002695 0.0002913 0.0003137 0.01% Castro::do_advance_ctu() 10 0.0001484 0.0001669 0.0002001 0.01% Castro::clean_state() 62 0.0001318 0.0001495 0.0001603 0.00% StateDataPhysBCFunct::() 41 9.995e-05 0.0001062 0.0001142 0.00% FillPatchIterator::FillFromLevel0() 41 9.34e-05 9.914e-05 0.0001073 0.00% FabArray::ParallelCopy() 41 8.457e-05 9.535e-05 0.0001035 0.00% Castro::do_old_sources() 10 8.353e-05 9.239e-05 0.0001005 0.00% Castro::Castro() 1 5.123e-05 8.314e-05 9.855e-05 0.00% Amr::FinalizeInit() 1 4.064e-06 1.481e-05 8.546e-05 0.00% FillPatchSingleLevel 41 7.065e-05 7.496e-05 7.93e-05 0.00% Castro::construct_old_source() 50 5.709e-05 6.767e-05 7.531e-05 0.00% Castro::do_new_sources() 10 5.254e-05 6.304e-05 6.984e-05 0.00% Castro::advance() 10 4.014e-05 4.72e-05 5.444e-05 0.00% Castro::subcycle_advance_ctu() 10 3.629e-05 4.59e-05 5.063e-05 0.00% Castro::apply_source_to_state() 20 3.809e-05 4.629e-05 5.025e-05 0.00% Castro::construct_new_gravity() 10 3.276e-05 3.885e-05 4.931e-05 0.00% Castro::construct_old_gravity() 10 3.779e-05 4.082e-05 4.595e-05 0.00% Amr::defBaseLevel() 1 2.806e-05 3.485e-05 4.317e-05 0.00% Castro::expand_state() 10 2.203e-05 2.439e-05 2.81e-05 0.00% Castro::check_for_nan() 20 2.151e-05 2.43e-05 2.682e-05 0.00% Castro::post_timestep() 10 1.409e-05 1.665e-05 1.91e-05 0.00% Castro::post_init() 1 1.377e-05 1.59e-05 1.718e-05 0.00% Castro::computeNewDt() 9 9.08e-06 1.057e-05 1.443e-05 0.00% Amr::init() 1 1.612e-06 2.698e-06 6.883e-06 0.00% Amr::InitializeInit() 1 2.463e-06 3.224e-06 5.745e-06 0.00% Castro::computeInitialDt() 2 3.191e-06 3.743e-06 4.906e-06 0.00% Amr::initialInit() 1 1.582e-06 1.87e-06 2.323e-06 0.00% Other 261 0.01586 0.01853 0.02059 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.372 3.373 3.373 100.00% Amr::coarseTimeStep() 10 3.175 3.175 3.175 94.14% Amr::timeStep() 10 3.162 3.163 3.164 93.82% Castro::advance() 10 3.146 3.147 3.147 93.31% Castro::subcycle_advance_ctu() 10 3.07 3.075 3.089 91.58% Castro::do_advance_ctu() 10 3.07 3.075 3.089 91.58% Castro::construct_ctu_hydro_source() 10 2.35 2.355 2.36 69.96% Gravity::make_radial_gravity() 21 0.2996 0.3104 0.3212 9.52% Gravity::get_new_grav_vector() 11 0.2073 0.2087 0.2105 6.24% AmrLevel::FillPatch() 41 0.1792 0.1937 0.2072 6.14% Castro::construct_old_gravity() 10 0.1743 0.1821 0.1912 5.67% Gravity::get_old_grav_vector() 10 0.1736 0.1814 0.1905 5.65% Castro::construct_new_gravity() 10 0.1855 0.1865 0.1875 5.56% Amr::init() 1 0.1841 0.1849 0.1852 5.49% FillPatchIterator::Initialize 41 0.1481 0.1619 0.1823 5.41% check_for_negative_density() 10 0.04869 0.1179 0.1712 5.08% Amr::initialInit() 1 0.1686 0.1699 0.1703 5.05% Castro::initialize_do_advance() 10 0.1518 0.1608 0.1651 4.89% FillPatchIterator::FillFromLevel0() 41 0.1106 0.12 0.1474 4.37% FillPatchSingleLevel 41 0.1105 0.12 0.1473 4.37% Amr::InitializeInit() 1 0.05764 0.09451 0.1429 4.24% Amr::defBaseLevel() 1 0.05763 0.0945 0.1429 4.24% Castro::initData() 1 0.04119 0.07693 0.1247 3.70% Castro::clean_state() 62 0.1093 0.1152 0.1191 3.53% Castro::estTimeStep() 21 0.0325 0.07732 0.1179 3.50% Castro::expand_state() 10 0.09774 0.1078 0.1177 3.49% FabArray::ParallelCopy() 41 0.07853 0.08758 0.1176 3.49% Amr::FinalizeInit() 1 0.02576 0.07537 0.1115 3.31% Castro::do_old_sources() 10 0.08924 0.09311 0.09669 2.87% Castro::computeInitialDt() 2 0.002149 0.05128 0.08738 2.59% amrex::Copy() 193 0.0637 0.07755 0.08611 2.55% FabArray::ParallelCopy_finish() 41 0.03535 0.04655 0.0823 2.44% Castro::initialize_advance() 10 0.05417 0.06835 0.07313 2.17% FabArray::setVal() 143 0.05402 0.06636 0.07242 2.15% Castro::do_new_sources() 10 0.05949 0.06341 0.06963 2.06% Castro::computeTemp() 63 0.05881 0.06381 0.06657 1.97% Castro::normalize_species() 62 0.04478 0.04607 0.04846 1.44% Castro::reset_internal_energy(MultiFab) 63 0.04204 0.04579 0.0479 1.42% Castro::reset_internal_energy(Fab) 1008 0.04177 0.0455 0.04761 1.41% FabArray::ParallelCopy_nowait() 41 0.03518 0.04093 0.04309 1.28% StateDataPhysBCFunct::() 41 0.02962 0.0323 0.03675 1.09% StateData::FillBoundary(geom) 41 0.02951 0.03219 0.03664 1.09% Castro::construct_new_source() 50 0.02902 0.03037 0.03252 0.96% Gravity::interpolate_monopole_grav() 21 0.02641 0.02664 0.0269 0.80% Castro::construct_new_gravity_source() 10 0.02308 0.02441 0.02633 0.78% Castro::post_init() 1 0.02328 0.0236 0.02376 0.70% Amr::writePlotFile() 2 0.0227 0.02281 0.02329 0.69% Castro::finalize_do_advance() 10 0.01217 0.01835 0.0229 0.68% Castro::post_timestep() 10 0.01487 0.01586 0.01679 0.50% Castro::apply_source_to_state() 20 0.01075 0.01248 0.01362 0.40% FabArray::Saxpy() 20 0.01071 0.01244 0.01358 0.40% Castro::check_for_nan() 20 0.0105 0.01137 0.01243 0.37% MultiFab::contains_nan() 20 0.01048 0.01135 0.0124 0.37% VisMF::Write(FabArray) 2 0.00835 0.009851 0.0124 0.37% Castro::Castro() 1 0.01068 0.01106 0.01203 0.36% FabArray::setDomainBndry() 41 0.007422 0.009766 0.01129 0.33% Castro::construct_old_source() 50 0.007142 0.009513 0.009969 0.30% Castro::construct_old_gravity_source() 10 0.007085 0.009446 0.009901 0.29% Castro::computeNewDt() 9 0.008807 0.008821 0.008832 0.26% Castro::initMFs() 1 0.006399 0.006791 0.008258 0.24% Other 261 0.0259 0.02986 0.03284 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 37 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6737 KiB 6744 KiB 6749 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4546 KiB 4555 KiB 4578 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 197 KiB 216 KiB 234 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2798 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 234 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 39 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 66 KiB 69 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a) finalized