Initializing AMReX (25.06-22-g1d307c2c661a)...
MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (25.06-22-g1d307c2c661a) initialized
Starting run at 05:34:23 UTC on 2025-06-25.
Successfully read inputs file ...
Castro git describe: 25.06-11-g174e2d91f
AMReX git describe: 25.06-22-g1d307c2c6
Microphysics git describe: 25.06-22-g24c0eb7b
reading extern runtime parameters ...
3 Species:
C12 O16 Mg24
Successfully read inputs file ...
INITIAL GRIDS
Level 0 8 grids 262144 cells 100 % of domain
smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32
PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.014536642 seconds
[Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells
STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05
[STEP 1] Coarse TimeStep time: 0.351504908
[STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells
STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05
[STEP 2] Coarse TimeStep time: 0.336797297
[STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells
STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05
[STEP 3] Coarse TimeStep time: 0.311491044
[STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells
STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05
[STEP 4] Coarse TimeStep time: 0.314183655
[STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells
STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05
[STEP 5] Coarse TimeStep time: 0.367039304
[STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells
STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05
[STEP 6] Coarse TimeStep time: 0.30519495
[STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells
STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05
[STEP 7] Coarse TimeStep time: 0.29428536
[STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells
STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05
[STEP 8] Coarse TimeStep time: 0.293909375
[STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells
STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05
[STEP 9] Coarse TimeStep time: 0.292862902
[STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells
STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05
[STEP 10] Coarse TimeStep time: 0.292346817
[STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.007879423 seconds
Ending run at 05:34:26 UTC on 2025-06-25.
Run time = 3.341276897
Run time without initialization = 3.173288297
Average number of zones advanced per microsecond: 0.826
Average number of zones advanced per microsecond per rank: 0.103
TinyProfiler total time across processes [min...avg...max]: 3.3392 ... 3.3406 ... 3.3414
-------------------------------------------------------------------------------------------
Name NCalls Excl. Min Excl. Avg Excl. Max Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 10 2.1787 2.2135 2.2428 67.12%
Gravity::make_radial_gravity() 21 0.2829 0.2928 0.3078 9.21%
check_for_negative_density() 10 0.04849 0.09164 0.1223 3.66%
Castro::initData() 1 0.03727 0.07263 0.1037 3.10%
FabArray::ParallelCopy_finish() 41 0.0427 0.0556 0.1012 3.03%
Castro::estTimeStep() 21 0.02699 0.05877 0.09593 2.87%
amrex::Copy() 193 0.06692 0.08086 0.09477 2.84%
FabArray::setVal() 143 0.05311 0.0657 0.07172 2.15%
Castro::reset_internal_energy(Fab) 1008 0.04412 0.04673 0.05371 1.61%
Castro::normalize_species() 62 0.04496 0.0457 0.04675 1.40%
StateData::FillBoundary(geom) 41 0.02864 0.03299 0.04466 1.34%
FabArray::ParallelCopy_nowait() 41 0.03624 0.04174 0.04382 1.31%
FillPatchIterator::Initialize 41 0.02789 0.03374 0.03593 1.08%
Gravity::interpolate_monopole_grav() 21 0.0265 0.02663 0.02706 0.81%
Castro::construct_new_gravity_source() 10 0.02324 0.02455 0.02666 0.80%
Castro::computeTemp() 63 0.01764 0.018 0.01841 0.55%
Castro::initialize_do_advance() 10 0.01166 0.01657 0.01773 0.53%
Castro::initialize_advance() 10 0.005297 0.01064 0.01372 0.41%
FabArray::Saxpy() 20 0.0104 0.01254 0.0137 0.41%
Amr::writePlotFile() 2 0.008007 0.01072 0.01293 0.39%
MultiFab::contains_nan() 20 0.01073 0.01146 0.01273 0.38%
VisMF::Write(FabArray) 2 0.008658 0.00963 0.01204 0.36%
FabArray::setDomainBndry() 41 0.007125 0.009915 0.01086 0.33%
Castro::construct_old_gravity_source() 10 0.006808 0.009592 0.01028 0.31%
Castro::initMFs() 1 0.006607 0.007113 0.008515 0.25%
Castro::enforce_min_density() 62 0.005614 0.006038 0.006517 0.20%
Castro::construct_new_source() 50 0.005715 0.006017 0.006272 0.19%
main() 1 0.003935 0.004591 0.005079 0.15%
Gravity::get_new_grav_vector() 11 0.003153 0.003668 0.003911 0.12%
Gravity::get_old_grav_vector() 10 0.001676 0.002099 0.002654 0.08%
Amr::coarseTimeStep() 10 0.001033 0.001731 0.002462 0.07%
Castro::finalize_do_advance() 10 0.0005925 0.001162 0.001668 0.05%
AmrLevel::FillPatch() 41 0.000835 0.0009831 0.001106 0.03%
Amr::timeStep() 10 0.0001376 0.0001915 0.0004841 0.01%
Castro::reset_internal_energy(MultiFab) 63 0.0002852 0.0002979 0.0003283 0.01%
Castro::do_advance_ctu() 10 0.0001341 0.000166 0.0002001 0.01%
Castro::clean_state() 62 0.0001317 0.0001478 0.0001764 0.01%
StateDataPhysBCFunct::() 41 9.723e-05 0.0001178 0.0001539 0.00%
FillPatchIterator::FillFromLevel0() 41 9.836e-05 0.0001111 0.0001406 0.00%
FabArray::ParallelCopy() 41 8.563e-05 9.784e-05 0.0001191 0.00%
Castro::do_old_sources() 10 8.216e-05 9.364e-05 0.0001023 0.00%
Amr::FinalizeInit() 1 3.535e-06 1.625e-05 9.829e-05 0.00%
Castro::Castro() 1 4.579e-05 6.529e-05 9.745e-05 0.00%
FillPatchSingleLevel 41 7.22e-05 8e-05 9.642e-05 0.00%
Castro::do_new_sources() 10 5.621e-05 6.721e-05 8.481e-05 0.00%
Castro::construct_old_source() 50 4.915e-05 6.923e-05 7.968e-05 0.00%
Castro::advance() 10 4.064e-05 4.636e-05 5.82e-05 0.00%
Amr::defBaseLevel() 1 4.016e-05 4.744e-05 5.819e-05 0.00%
Castro::subcycle_advance_ctu() 10 4.099e-05 4.604e-05 5.474e-05 0.00%
Castro::apply_source_to_state() 20 3.87e-05 4.618e-05 5.192e-05 0.00%
Castro::construct_old_gravity() 10 3.991e-05 4.285e-05 4.527e-05 0.00%
Castro::construct_new_gravity() 10 3.34e-05 3.823e-05 4.441e-05 0.00%
Castro::expand_state() 10 2.061e-05 2.638e-05 3.559e-05 0.00%
Castro::check_for_nan() 20 2.446e-05 2.648e-05 2.938e-05 0.00%
Castro::post_timestep() 10 1.33e-05 1.755e-05 2.639e-05 0.00%
Castro::post_init() 1 1.547e-05 1.684e-05 1.954e-05 0.00%
Castro::computeNewDt() 9 8.227e-06 9.606e-06 1.211e-05 0.00%
Amr::InitializeInit() 1 2.35e-06 3.267e-06 6.681e-06 0.00%
Castro::computeInitialDt() 2 3.294e-06 3.836e-06 4.781e-06 0.00%
Amr::init() 1 1.581e-06 1.971e-06 2.494e-06 0.00%
Amr::initialInit() 1 1.429e-06 1.777e-06 2.206e-06 0.00%
Other 199 0.01031 0.01263 0.01488 0.45%
-------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------
Name NCalls Incl. Min Incl. Avg Incl. Max Max %
-------------------------------------------------------------------------------------------
main() 1 3.339 3.341 3.341 100.00%
Amr::coarseTimeStep() 10 3.16 3.16 3.16 94.58%
Amr::timeStep() 10 3.148 3.149 3.15 94.27%
Castro::advance() 10 3.133 3.133 3.134 93.79%
Castro::subcycle_advance_ctu() 10 3.058 3.062 3.076 92.06%
Castro::do_advance_ctu() 10 3.058 3.062 3.076 92.06%
Castro::construct_ctu_hydro_source() 10 2.312 2.326 2.333 69.82%
Gravity::make_radial_gravity() 21 0.2989 0.3094 0.3202 9.58%
AmrLevel::FillPatch() 41 0.1891 0.2084 0.2329 6.97%
Gravity::get_new_grav_vector() 11 0.2046 0.2063 0.2072 6.20%
FillPatchIterator::Initialize 41 0.1601 0.1745 0.204 6.11%
Castro::construct_old_gravity() 10 0.178 0.1855 0.195 5.84%
Gravity::get_old_grav_vector() 10 0.1772 0.1849 0.1943 5.81%
Castro::construct_new_gravity() 10 0.1828 0.1839 0.1846 5.53%
Castro::initialize_do_advance() 10 0.1569 0.1652 0.1699 5.08%
FillPatchIterator::FillFromLevel0() 41 0.1179 0.1308 0.169 5.06%
FillPatchSingleLevel 41 0.1178 0.1307 0.1689 5.05%
Amr::init() 1 0.1667 0.1674 0.1679 5.02%
Amr::initialInit() 1 0.1514 0.1524 0.1531 4.58%
FabArray::ParallelCopy() 41 0.08672 0.09754 0.1377 4.12%
Amr::InitializeInit() 1 0.05786 0.09408 0.1255 3.76%
Amr::defBaseLevel() 1 0.05786 0.09408 0.1255 3.76%
Castro::clean_state() 62 0.1129 0.116 0.1225 3.67%
check_for_negative_density() 10 0.04849 0.09164 0.1223 3.66%
Castro::expand_state() 10 0.1021 0.1113 0.122 3.65%
Castro::do_old_sources() 10 0.0972 0.1046 0.1152 3.45%
Castro::initData() 1 0.04116 0.0765 0.1072 3.21%
FabArray::ParallelCopy_finish() 41 0.0427 0.0556 0.1012 3.03%
Castro::estTimeStep() 21 0.02699 0.05877 0.09593 2.87%
amrex::Copy() 193 0.06692 0.08086 0.09477 2.84%
Amr::FinalizeInit() 1 0.02581 0.05835 0.09421 2.82%
Castro::initialize_advance() 10 0.05329 0.06774 0.07216 2.16%
Castro::computeTemp() 63 0.06206 0.06503 0.07215 2.16%
FabArray::setVal() 143 0.05311 0.0657 0.07172 2.15%
Castro::computeInitialDt() 2 0.002053 0.03421 0.06998 2.09%
Castro::do_new_sources() 10 0.05921 0.06352 0.06835 2.05%
Castro::reset_internal_energy(MultiFab) 63 0.04441 0.04703 0.05402 1.62%
Castro::reset_internal_energy(Fab) 1008 0.04412 0.04673 0.05371 1.61%
Castro::normalize_species() 62 0.04496 0.0457 0.04675 1.40%
StateDataPhysBCFunct::() 41 0.02876 0.03311 0.04481 1.34%
StateData::FillBoundary(geom) 41 0.02864 0.03299 0.04466 1.34%
FabArray::ParallelCopy_nowait() 41 0.03638 0.04185 0.04392 1.31%
Castro::construct_new_source() 50 0.02925 0.03057 0.0328 0.98%
Gravity::interpolate_monopole_grav() 21 0.0265 0.02663 0.02706 0.81%
Castro::construct_new_gravity_source() 10 0.02324 0.02455 0.02666 0.80%
Castro::post_init() 1 0.02338 0.02363 0.02371 0.71%
Amr::writePlotFile() 2 0.02271 0.02291 0.02329 0.70%
Castro::finalize_do_advance() 10 0.01201 0.01727 0.02119 0.63%
Castro::post_timestep() 10 0.01484 0.01565 0.01614 0.48%
Castro::apply_source_to_state() 20 0.01044 0.01259 0.01375 0.41%
FabArray::Saxpy() 20 0.0104 0.01254 0.0137 0.41%
Castro::check_for_nan() 20 0.01075 0.01149 0.01276 0.38%
MultiFab::contains_nan() 20 0.01073 0.01146 0.01273 0.38%
VisMF::Write(FabArray) 2 0.008658 0.00963 0.01204 0.36%
Castro::Castro() 1 0.01042 0.01106 0.01194 0.36%
FabArray::setDomainBndry() 41 0.007125 0.009915 0.01086 0.33%
Castro::construct_old_source() 50 0.006857 0.009661 0.01035 0.31%
Castro::construct_old_gravity_source() 10 0.006808 0.009592 0.01028 0.31%
Castro::initMFs() 1 0.006607 0.007113 0.008515 0.25%
Castro::computeNewDt() 9 0.008453 0.00847 0.008478 0.25%
Castro::enforce_min_density() 62 0.005614 0.006038 0.006517 0.20%
Other 199 0.0203 0.02393 0.02746 0.82%
-------------------------------------------------------------------------------------------
Unused ParmParse Variables:
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2]
Pinned Memory Usage:
---------------------------------------------------------------------------------------------------------------------
Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max
---------------------------------------------------------------------------------------------------------------------
The_Pinned_Arena::Initialize() 8 8 31 B 35 B 42 B 8192 KiB 8192 KiB 8192 KiB
---------------------------------------------------------------------------------------------------------------------
Cpu Memory Usage:
---------------------------------------------------------------------------------------------------------------------------
Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max
---------------------------------------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB
Castro::initMFs() 48 48 8659 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB
Castro::swap_state_time_levels() 32 32 6770 KiB 6777 KiB 6782 KiB 7153 KiB 7153 KiB 7153 KiB
StateData::define() 32 32 7130 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB
Castro::initialize_do_advance() 80 80 4573 KiB 4579 KiB 4602 KiB 5000 KiB 5000 KiB 5000 KiB
FillPatchIterator::Initialize 328 328 211 KiB 233 KiB 261 KiB 5000 KiB 5000 KiB 5000 KiB
Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB
Castro::initialize_advance() 80 80 2809 KiB 2813 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB
Gravity::make_radial_gravity() 168 168 228 KiB 236 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB
FabArray::ParallelCopy_nowait() 656 656 39 KiB 43 KiB 63 KiB 2170 KiB 2170 KiB 2170 KiB
Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB
Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB
Gravity::get_old_grav_vector() 80 80 68 KiB 71 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB
---------------------------------------------------------------------------------------------------------------------------
AMReX (25.06-22-g1d307c2c661a) finalized