Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:24:12 UTC on 2025-06-27. Successfully read inputs file ... Castro git describe: 25.06-13-g16daf4b44 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.06-25-g86ca144d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014224849 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.337740657 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34167402 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.317855899 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.317344745 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.374881306 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30481222 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296532885 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295248177 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.29729052 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298207232 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008038554 seconds Ending run at 05:24:16 UTC on 2025-06-27. Run time = 3.379075885 Run time without initialization = 3.194787047 Average number of zones advanced per microsecond: 0.821 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3761 ... 3.3781 ... 3.3791 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1728 2.2142 2.2682 67.13% Gravity::make_radial_gravity() 21 0.287 0.2962 0.316 9.35% check_for_negative_density() 10 0.03403 0.09084 0.1359 4.02% Castro::initData() 1 0.03701 0.07335 0.1177 3.48% Castro::estTimeStep() 21 0.02315 0.07333 0.1158 3.43% FabArray::ParallelCopy_finish() 41 0.0509 0.07137 0.1118 3.31% amrex::Copy() 193 0.06871 0.0846 0.09846 2.91% FabArray::setVal() 143 0.05353 0.06604 0.07409 2.19% Castro::reset_internal_energy(Fab) 1008 0.04403 0.04605 0.04906 1.45% Castro::normalize_species() 62 0.0446 0.04575 0.04714 1.39% FabArray::ParallelCopy_nowait() 41 0.03679 0.04155 0.04304 1.27% FillPatchIterator::Initialize 41 0.02791 0.03393 0.03713 1.10% StateData::FillBoundary(geom) 41 0.02795 0.03145 0.03305 0.98% Gravity::interpolate_monopole_grav() 21 0.02609 0.02741 0.03114 0.92% Castro::construct_new_gravity_source() 10 0.02246 0.02415 0.02666 0.79% Castro::computeTemp() 63 0.01724 0.01811 0.01952 0.58% Castro::initialize_do_advance() 10 0.01151 0.01638 0.01771 0.52% Castro::initialize_advance() 10 0.005341 0.01072 0.014 0.41% FabArray::Saxpy() 20 0.01045 0.01206 0.01312 0.39% FabArray::setDomainBndry() 41 0.006971 0.01058 0.01295 0.38% VisMF::Write(FabArray) 2 0.009049 0.009755 0.01275 0.38% MultiFab::contains_nan() 20 0.01046 0.01141 0.01272 0.38% Amr::writePlotFile() 2 0.007469 0.01084 0.01183 0.35% Castro::construct_old_gravity_source() 10 0.006631 0.008884 0.009881 0.29% Castro::initMFs() 1 0.00641 0.007237 0.008728 0.26% Castro::construct_new_source() 50 0.005486 0.005972 0.006276 0.19% main() 1 0.003698 0.004013 0.004661 0.14% Gravity::get_new_grav_vector() 11 0.002905 0.003518 0.003902 0.12% Gravity::get_old_grav_vector() 10 0.001462 0.002074 0.002747 0.08% Amr::coarseTimeStep() 10 0.001276 0.002137 0.002639 0.08% Castro::finalize_do_advance() 10 0.0005537 0.001186 0.001665 0.05% AmrLevel::FillPatch() 41 0.0008396 0.001037 0.001192 0.04% Amr::timeStep() 10 0.0001296 0.0001739 0.0003606 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002681 0.0002841 0.0003089 0.01% Castro::do_advance_ctu() 10 0.0001426 0.0001762 0.0002114 0.01% Castro::clean_state() 62 0.000142 0.0001597 0.0001877 0.01% StateDataPhysBCFunct::() 41 0.0001013 0.0001337 0.0001818 0.01% Castro::do_old_sources() 10 7.512e-05 9.337e-05 0.0001183 0.00% FabArray::ParallelCopy() 41 7.862e-05 9.624e-05 0.0001151 0.00% FillPatchIterator::FillFromLevel0() 41 9.587e-05 0.0001057 0.0001147 0.00% FillPatchSingleLevel 41 7.397e-05 8.108e-05 9.228e-05 0.00% Amr::FinalizeInit() 1 3.509e-06 1.456e-05 8.386e-05 0.00% Castro::construct_old_source() 50 4.615e-05 6.484e-05 7.26e-05 0.00% Castro::do_new_sources() 10 5.29e-05 6.038e-05 6.738e-05 0.00% Castro::Castro() 1 4.109e-05 5.369e-05 6.475e-05 0.00% Castro::apply_source_to_state() 20 4.468e-05 5.288e-05 6.12e-05 0.00% Amr::defBaseLevel() 1 4.145e-05 4.804e-05 5.535e-05 0.00% Castro::advance() 10 4.202e-05 4.513e-05 5.355e-05 0.00% Castro::subcycle_advance_ctu() 10 4.044e-05 4.533e-05 4.988e-05 0.00% Castro::construct_new_gravity() 10 2.933e-05 3.694e-05 4.442e-05 0.00% Castro::construct_old_gravity() 10 3.543e-05 3.784e-05 4.338e-05 0.00% Castro::expand_state() 10 2.273e-05 2.727e-05 3.17e-05 0.00% Castro::check_for_nan() 20 2.319e-05 2.579e-05 2.783e-05 0.00% Castro::post_timestep() 10 1.309e-05 1.688e-05 2.562e-05 0.00% Castro::post_init() 1 1.506e-05 1.775e-05 2.096e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.606e-06 1.159e-05 1.277e-05 0.00% Castro::computeNewDt() 9 8.675e-06 9.522e-06 1.049e-05 0.00% Amr::InitializeInit() 1 2.493e-06 3.731e-06 8.523e-06 0.00% Amr::init() 1 2.09e-06 2.782e-06 5.805e-06 0.00% Castro::computeInitialDt() 2 2.919e-06 3.744e-06 4.427e-06 0.00% Amr::initialInit() 1 1.565e-06 1.851e-06 2.129e-06 0.00% Other 260 0.01499 0.02003 0.02269 0.67% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.376 3.378 3.379 100.00% Amr::coarseTimeStep() 10 3.182 3.182 3.182 94.17% Amr::timeStep() 10 3.17 3.171 3.171 93.85% Castro::advance() 10 3.154 3.155 3.155 93.38% Castro::subcycle_advance_ctu() 10 3.079 3.083 3.099 91.70% Castro::do_advance_ctu() 10 3.079 3.083 3.099 91.70% Castro::construct_ctu_hydro_source() 10 2.323 2.326 2.33 68.95% Gravity::make_radial_gravity() 21 0.3035 0.313 0.3304 9.78% AmrLevel::FillPatch() 41 0.2091 0.2233 0.2358 6.98% FillPatchIterator::Initialize 41 0.1724 0.1894 0.2119 6.27% Gravity::get_new_grav_vector() 11 0.2071 0.2082 0.2095 6.20% Castro::construct_old_gravity() 10 0.189 0.1958 0.2089 6.18% Gravity::get_old_grav_vector() 10 0.1884 0.1951 0.2082 6.16% Castro::construct_new_gravity() 10 0.1842 0.1852 0.1861 5.51% Amr::init() 1 0.1816 0.1836 0.1845 5.46% FillPatchIterator::FillFromLevel0() 41 0.1257 0.1449 0.177 5.24% FillPatchSingleLevel 41 0.1256 0.1448 0.1769 5.24% Amr::initialInit() 1 0.1658 0.1683 0.1696 5.02% Castro::initialize_do_advance() 10 0.1587 0.166 0.1685 4.99% FabArray::ParallelCopy() 41 0.0938 0.1131 0.1488 4.40% Amr::InitializeInit() 1 0.05864 0.09565 0.1412 4.18% Amr::defBaseLevel() 1 0.05864 0.09565 0.1412 4.18% check_for_negative_density() 10 0.03403 0.09084 0.1359 4.02% Castro::initData() 1 0.04057 0.07706 0.1212 3.59% Castro::clean_state() 62 0.112 0.1154 0.1205 3.57% Castro::expand_state() 10 0.1041 0.1125 0.1184 3.51% Castro::do_old_sources() 10 0.0964 0.1097 0.1182 3.50% Castro::estTimeStep() 21 0.02315 0.07333 0.1158 3.43% FabArray::ParallelCopy_finish() 41 0.0509 0.07137 0.1118 3.31% Amr::FinalizeInit() 1 0.02753 0.07269 0.1102 3.26% amrex::Copy() 193 0.06871 0.0846 0.09846 2.91% Castro::computeInitialDt() 2 0.00217 0.04772 0.08564 2.53% FabArray::setVal() 143 0.05353 0.06604 0.07409 2.19% Castro::initialize_advance() 10 0.05227 0.06828 0.07277 2.15% Castro::computeTemp() 63 0.06156 0.06445 0.06888 2.04% Castro::do_new_sources() 10 0.05969 0.06292 0.06819 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04432 0.04634 0.04936 1.46% Castro::reset_internal_energy(Fab) 1008 0.04403 0.04605 0.04906 1.45% Castro::normalize_species() 62 0.0446 0.04575 0.04714 1.39% FabArray::ParallelCopy_nowait() 41 0.03692 0.04165 0.04313 1.28% StateDataPhysBCFunct::() 41 0.02806 0.03159 0.03315 0.98% StateData::FillBoundary(geom) 41 0.02795 0.03145 0.03305 0.98% Castro::construct_new_source() 50 0.02843 0.03013 0.03293 0.97% Gravity::interpolate_monopole_grav() 21 0.02609 0.02741 0.03114 0.92% Castro::construct_new_gravity_source() 10 0.02246 0.02415 0.02666 0.79% Castro::post_init() 1 0.02384 0.02438 0.02506 0.74% Amr::writePlotFile() 2 0.02252 0.02333 0.02386 0.71% Castro::finalize_do_advance() 10 0.0136 0.01841 0.02304 0.68% Castro::post_timestep() 10 0.01522 0.01562 0.01603 0.47% Castro::apply_source_to_state() 20 0.0105 0.01211 0.01318 0.39% FabArray::Saxpy() 20 0.01045 0.01206 0.01312 0.39% FabArray::setDomainBndry() 41 0.006971 0.01058 0.01295 0.38% VisMF::Write(FabArray) 2 0.009049 0.009755 0.01275 0.38% Castro::check_for_nan() 20 0.01049 0.01144 0.01274 0.38% MultiFab::contains_nan() 20 0.01046 0.01141 0.01272 0.38% Castro::Castro() 1 0.009846 0.01074 0.01204 0.36% Castro::construct_old_source() 50 0.006677 0.008949 0.009954 0.29% Castro::construct_old_gravity_source() 10 0.006631 0.008884 0.009881 0.29% Castro::initMFs() 1 0.00641 0.007237 0.008728 0.26% Castro::computeNewDt() 9 0.008379 0.00839 0.008397 0.25% AmrLevel::AmrLevel(dm) 1 0.005287 0.005822 0.006437 0.19% Other 260 0.01972 0.02697 0.03079 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 38 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8665 KiB 8668 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6743 KiB 6746 KiB 6751 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7136 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4551 KiB 4558 KiB 4577 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 223 KiB 240 KiB 256 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2797 KiB 2800 KiB 2802 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 236 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 47 KiB 65 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 74 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized