Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 18:36:02 UTC on 2025-06-30. Successfully read inputs file ... Castro git describe: 25.06-20-gad79afee0 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.06-26-g860ef38f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015382989 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340323652 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.327825657 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314192754 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314773079 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.356257353 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306570727 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.302157719 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299153325 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299955508 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299693133 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008172795 seconds Ending run at 18:36:06 UTC on 2025-06-30. Run time = 3.366268443 Run time without initialization = 3.174756944 Average number of zones advanced per microsecond: 0.826 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3650 ... 3.3654 ... 3.3669 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1258 2.2323 2.2777 67.65% Gravity::make_radial_gravity() 21 0.2889 0.2951 0.3098 9.20% check_for_negative_density() 10 0.04465 0.0855 0.185 5.49% Castro::initData() 1 0.03998 0.07529 0.1223 3.63% Castro::estTimeStep() 21 0.02313 0.07537 0.1188 3.53% amrex::Copy() 193 0.07212 0.0809 0.09116 2.71% FabArray::ParallelCopy_finish() 41 0.03475 0.04582 0.07975 2.37% FabArray::setVal() 143 0.05191 0.06585 0.07186 2.13% Castro::reset_internal_energy(Fab) 1008 0.04273 0.04581 0.0488 1.45% Castro::normalize_species() 62 0.04548 0.04588 0.04631 1.38% FabArray::ParallelCopy_nowait() 41 0.03635 0.041 0.04317 1.28% StateData::FillBoundary(geom) 41 0.0286 0.0323 0.03843 1.14% FillPatchIterator::Initialize 41 0.02854 0.03247 0.03473 1.03% Gravity::interpolate_monopole_grav() 21 0.02665 0.02706 0.0275 0.82% Castro::construct_new_gravity_source() 10 0.0232 0.02463 0.02656 0.79% Castro::computeTemp() 63 0.01719 0.0182 0.01874 0.56% Castro::initialize_do_advance() 10 0.01212 0.01658 0.01789 0.53% FabArray::Saxpy() 20 0.0109 0.01279 0.01369 0.41% Castro::initialize_advance() 10 0.005355 0.01062 0.01356 0.40% VisMF::Write(FabArray) 2 0.009328 0.01005 0.01298 0.39% FabArray::setDomainBndry() 41 0.007227 0.01079 0.01288 0.38% MultiFab::contains_nan() 20 0.01064 0.01151 0.01258 0.37% Amr::writePlotFile() 2 0.008549 0.01108 0.01181 0.35% Castro::construct_old_gravity_source() 10 0.007141 0.009656 0.01015 0.30% Castro::initMFs() 1 0.00677 0.007474 0.007903 0.23% Castro::construct_new_source() 50 0.005568 0.006098 0.006383 0.19% main() 1 0.004259 0.004514 0.004953 0.15% Gravity::get_new_grav_vector() 11 0.002883 0.00348 0.003874 0.12% Gravity::get_old_grav_vector() 10 0.001514 0.00202 0.002486 0.07% Amr::coarseTimeStep() 10 0.001013 0.001767 0.002471 0.07% AmrLevel::FillPatch() 41 0.0009521 0.001215 0.001437 0.04% Castro::finalize_do_advance() 10 0.0006356 0.001197 0.001302 0.04% Amr::timeStep() 10 0.0001394 0.0001926 0.0004429 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002745 0.0002862 0.0003003 0.01% Castro::do_advance_ctu() 10 0.0001255 0.0001515 0.0001848 0.01% Castro::clean_state() 62 0.0001383 0.0001526 0.000162 0.00% FillPatchIterator::FillFromLevel0() 41 8.968e-05 0.0001089 0.0001503 0.00% StateDataPhysBCFunct::() 41 0.000104 0.0001231 0.0001435 0.00% FabArray::ParallelCopy() 41 9.06e-05 9.537e-05 0.000101 0.00% Castro::do_old_sources() 10 7.28e-05 8.636e-05 9.768e-05 0.00% Amr::FinalizeInit() 1 3.948e-06 1.638e-05 9.394e-05 0.00% FillPatchSingleLevel 41 6.411e-05 7.096e-05 8.442e-05 0.00% Castro::Castro() 1 6.288e-05 7.189e-05 8.358e-05 0.00% Castro::construct_old_source() 50 5.281e-05 6.861e-05 8.068e-05 0.00% Castro::do_new_sources() 10 4.872e-05 5.703e-05 6.512e-05 0.00% Castro::apply_source_to_state() 20 4.189e-05 4.949e-05 6.358e-05 0.00% Castro::construct_old_gravity() 10 3.454e-05 4.084e-05 5.541e-05 0.00% Castro::subcycle_advance_ctu() 10 3.843e-05 4.515e-05 5.235e-05 0.00% Castro::advance() 10 3.886e-05 4.369e-05 5.002e-05 0.00% Amr::defBaseLevel() 1 3.845e-05 4.297e-05 4.751e-05 0.00% Castro::construct_new_gravity() 10 2.994e-05 3.501e-05 4.262e-05 0.00% Castro::expand_state() 10 2.122e-05 2.546e-05 3.245e-05 0.00% Castro::check_for_nan() 20 2.22e-05 2.449e-05 2.669e-05 0.00% Castro::post_timestep() 10 1.427e-05 1.614e-05 1.909e-05 0.00% Castro::post_init() 1 9.353e-06 1.058e-05 1.493e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.023e-05 1.12e-05 1.32e-05 0.00% Castro::computeNewDt() 9 9.385e-06 1.002e-05 1.103e-05 0.00% Amr::InitializeInit() 1 2.633e-06 3.462e-06 6.906e-06 0.00% Castro::computeInitialDt() 2 3.627e-06 4.384e-06 5.674e-06 0.00% Amr::initialInit() 1 1.646e-06 2.381e-06 5.381e-06 0.00% Amr::init() 1 2.084e-06 2.47e-06 2.836e-06 0.00% Other 260 0.01625 0.01916 0.0213 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.365 3.365 3.367 100.00% Amr::coarseTimeStep() 10 3.162 3.162 3.162 93.91% Amr::timeStep() 10 3.15 3.15 3.151 93.59% Castro::advance() 10 3.134 3.134 3.135 93.10% Castro::subcycle_advance_ctu() 10 3.058 3.063 3.078 91.41% Castro::do_advance_ctu() 10 3.058 3.063 3.078 91.41% Castro::construct_ctu_hydro_source() 10 2.331 2.339 2.344 69.61% Gravity::make_radial_gravity() 21 0.3052 0.3112 0.3238 9.62% AmrLevel::FillPatch() 41 0.1841 0.1972 0.2198 6.53% Gravity::get_new_grav_vector() 11 0.2069 0.2082 0.2097 6.23% Castro::construct_old_gravity() 10 0.1788 0.1839 0.194 5.76% Gravity::get_old_grav_vector() 10 0.1781 0.1833 0.1934 5.75% Amr::init() 1 0.1905 0.1906 0.1916 5.69% FillPatchIterator::Initialize 41 0.1474 0.1629 0.1909 5.67% check_for_negative_density() 10 0.04465 0.0855 0.185 5.49% Castro::construct_new_gravity() 10 0.1824 0.183 0.184 5.46% Amr::initialInit() 1 0.1748 0.1751 0.176 5.23% Castro::initialize_do_advance() 10 0.1573 0.1639 0.169 5.02% FillPatchIterator::FillFromLevel0() 41 0.1078 0.1196 0.1551 4.61% FillPatchSingleLevel 41 0.1076 0.1195 0.155 4.60% Amr::InitializeInit() 1 0.06062 0.09734 0.1456 4.32% Amr::defBaseLevel() 1 0.06062 0.09733 0.1456 4.32% Castro::initData() 1 0.04367 0.07915 0.1264 3.75% Castro::expand_state() 10 0.1015 0.1103 0.1206 3.58% Castro::clean_state() 62 0.1117 0.1156 0.1189 3.53% Castro::estTimeStep() 21 0.02313 0.07537 0.1188 3.53% FabArray::ParallelCopy() 41 0.07656 0.08702 0.1163 3.45% Amr::FinalizeInit() 1 0.02944 0.07771 0.1154 3.43% Castro::do_old_sources() 10 0.09044 0.09575 0.1055 3.13% amrex::Copy() 193 0.07212 0.0809 0.09116 2.71% Castro::computeInitialDt() 2 0.002526 0.05087 0.08848 2.63% FabArray::ParallelCopy_finish() 41 0.03475 0.04582 0.07975 2.37% Castro::initialize_advance() 10 0.05264 0.06835 0.07266 2.16% FabArray::setVal() 143 0.05191 0.06585 0.07186 2.13% Castro::do_new_sources() 10 0.05832 0.06382 0.06902 2.05% Castro::computeTemp() 63 0.06021 0.06429 0.06785 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04302 0.0461 0.0491 1.46% Castro::reset_internal_energy(Fab) 1008 0.04273 0.04581 0.0488 1.45% Castro::normalize_species() 62 0.04548 0.04588 0.04631 1.38% FabArray::ParallelCopy_nowait() 41 0.03646 0.0411 0.04328 1.29% StateDataPhysBCFunct::() 41 0.02872 0.03243 0.03858 1.15% StateData::FillBoundary(geom) 41 0.0286 0.0323 0.03843 1.14% Castro::construct_new_source() 50 0.02912 0.03072 0.03292 0.98% Gravity::interpolate_monopole_grav() 21 0.02665 0.02706 0.0275 0.82% Castro::construct_new_gravity_source() 10 0.0232 0.02463 0.02656 0.79% Castro::post_init() 1 0.02626 0.02644 0.0265 0.79% Amr::writePlotFile() 2 0.02376 0.02384 0.02393 0.71% Castro::finalize_do_advance() 10 0.01177 0.01725 0.0225 0.67% Castro::post_timestep() 10 0.01517 0.01581 0.01631 0.48% Castro::apply_source_to_state() 20 0.01096 0.01284 0.01374 0.41% FabArray::Saxpy() 20 0.0109 0.01279 0.01369 0.41% VisMF::Write(FabArray) 2 0.009328 0.01005 0.01298 0.39% FabArray::setDomainBndry() 41 0.007227 0.01079 0.01288 0.38% Castro::check_for_nan() 20 0.01067 0.01154 0.01261 0.37% MultiFab::contains_nan() 20 0.01064 0.01151 0.01258 0.37% Castro::Castro() 1 0.009916 0.01155 0.01246 0.37% Castro::construct_old_source() 50 0.007194 0.009725 0.01022 0.30% Castro::construct_old_gravity_source() 10 0.007141 0.009656 0.01015 0.30% Castro::computeNewDt() 9 0.008451 0.008461 0.00847 0.25% Castro::initMFs() 1 0.00677 0.007474 0.007903 0.23% AmrLevel::AmrLevel(dm) 1 0.005851 0.006365 0.006595 0.20% Other 260 0.02102 0.02437 0.02782 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 35 B 41 B 61 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8667 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6723 KiB 6729 KiB 6731 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4540 KiB 4545 KiB 4562 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 221 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2788 KiB 2793 KiB 2794 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 235 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 40 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized