Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:19:15 UTC on 2025-06-30. Successfully read inputs file ... Castro git describe: 25.06-13-g16daf4b44 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.06-26-g860ef38f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015932704 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.362254559 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.359040524 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.369614448 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.392400427 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.37416132 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.368852411 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.378184657 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.378612935 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.371695169 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.374730743 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012779042 seconds Ending run at 05:19:19 UTC on 2025-06-30. Run time = 3.968663525 Run time without initialization = 3.751039247 Average number of zones advanced per microsecond: 0.699 Average number of zones advanced per microsecond per rank: 0.087 TinyProfiler total time across processes [min...avg...max]: 3.9604 ... 3.9641 ... 3.9693 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3209 2.4839 2.6567 66.93% check_for_negative_density() 10 0.04266 0.2191 0.3856 9.72% Gravity::make_radial_gravity() 21 0.2931 0.3084 0.3244 8.17% Castro::initData() 1 0.03861 0.08267 0.1345 3.39% Castro::estTimeStep() 21 0.02382 0.08504 0.1305 3.29% amrex::Copy() 193 0.09917 0.111 0.1227 3.09% FabArray::setVal() 143 0.08948 0.09382 0.09826 2.48% FabArray::ParallelCopy_nowait() 41 0.0584 0.06208 0.06587 1.66% FabArray::ParallelCopy_finish() 41 0.05214 0.05645 0.06031 1.52% FillPatchIterator::Initialize 41 0.04842 0.05347 0.05875 1.48% Castro::reset_internal_energy(Fab) 1008 0.04753 0.04976 0.05153 1.30% Castro::normalize_species() 62 0.04593 0.04698 0.04816 1.21% StateData::FillBoundary(geom) 41 0.03457 0.03794 0.04021 1.01% Castro::construct_new_gravity_source() 10 0.02931 0.03226 0.03708 0.93% Gravity::interpolate_monopole_grav() 21 0.02645 0.02663 0.02706 0.68% Castro::initialize_do_advance() 10 0.02166 0.02429 0.02608 0.66% FabArray::setDomainBndry() 41 0.01694 0.01982 0.02223 0.56% Castro::computeTemp() 63 0.01823 0.01947 0.02028 0.51% FabArray::Saxpy() 20 0.01646 0.01857 0.02027 0.51% MultiFab::contains_nan() 20 0.01187 0.01409 0.01584 0.40% Castro::initialize_advance() 10 0.01443 0.01487 0.01553 0.39% Castro::construct_old_gravity_source() 10 0.01504 0.01525 0.01553 0.39% VisMF::Write(FabArray) 2 0.01003 0.01152 0.01549 0.39% Amr::writePlotFile() 2 0.008946 0.01315 0.01495 0.38% Castro::initMFs() 1 0.006542 0.008749 0.01203 0.30% StateData::define() 4 0.005394 0.007291 0.009523 0.24% Castro::construct_new_source() 50 0.007312 0.007883 0.008546 0.22% main() 1 0.0054 0.006948 0.008197 0.21% Gravity::get_new_grav_vector() 11 0.004151 0.005122 0.005772 0.15% Gravity::get_old_grav_vector() 10 0.002493 0.003031 0.003763 0.09% Amr::coarseTimeStep() 10 0.0008253 0.001804 0.002617 0.07% AmrLevel::FillPatch() 41 0.001042 0.001225 0.001447 0.04% Castro::finalize_do_advance() 10 0.001287 0.001321 0.001361 0.03% Amr::timeStep() 10 0.0001562 0.0002084 0.0003883 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003039 0.0003313 0.00035 0.01% Castro::do_advance_ctu() 10 0.0001972 0.0002186 0.0002401 0.01% Castro::clean_state() 62 0.0001892 0.0002117 0.0002278 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001245 0.0001461 0.0001667 0.00% FabArray::ParallelCopy() 41 0.0001215 0.0001334 0.0001611 0.00% StateDataPhysBCFunct::() 41 0.00012 0.0001339 0.0001552 0.00% Castro::do_old_sources() 10 0.0001268 0.0001339 0.0001415 0.00% FillPatchSingleLevel 41 8.955e-05 0.0001057 0.000119 0.00% Castro::construct_old_source() 50 9.934e-05 0.0001051 0.0001119 0.00% Castro::apply_source_to_state() 20 6.218e-05 8.073e-05 9.614e-05 0.00% Castro::do_new_sources() 10 7.428e-05 8.229e-05 9.346e-05 0.00% Castro::subcycle_advance_ctu() 10 5.173e-05 6.416e-05 7.287e-05 0.00% Amr::FinalizeInit() 1 3.476e-06 1.295e-05 7.283e-05 0.00% Castro::Castro() 1 3.96e-05 5.364e-05 6.782e-05 0.00% Castro::advance() 10 5.215e-05 5.621e-05 6.565e-05 0.00% Amr::defBaseLevel() 1 3.822e-05 5.211e-05 6.535e-05 0.00% Castro::expand_state() 10 3.763e-05 4.697e-05 6.144e-05 0.00% Castro::construct_new_gravity() 10 3.184e-05 4.214e-05 5.686e-05 0.00% Castro::construct_old_gravity() 10 4.029e-05 4.966e-05 5.523e-05 0.00% Castro::check_for_nan() 20 2.912e-05 3.429e-05 4.462e-05 0.00% Castro::post_init() 1 1.659e-05 1.881e-05 2.253e-05 0.00% Castro::post_timestep() 10 1.636e-05 1.939e-05 2.245e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.588e-06 1.481e-05 2.177e-05 0.00% Castro::computeNewDt() 9 9.518e-06 1.037e-05 1.175e-05 0.00% Amr::InitializeInit() 1 2.651e-06 3.616e-06 6.102e-06 0.00% Castro::computeInitialDt() 2 3.15e-06 3.722e-06 4.198e-06 0.00% Amr::init() 1 2.009e-06 2.448e-06 2.946e-06 0.00% Amr::initialInit() 1 1.721e-06 2.01e-06 2.778e-06 0.00% Other 256 0.01117 0.01784 0.02367 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.96 3.964 3.969 100.00% Amr::coarseTimeStep() 10 3.73 3.73 3.73 93.98% Amr::timeStep() 10 3.718 3.719 3.72 93.71% Castro::advance() 10 3.702 3.702 3.703 93.29% Castro::subcycle_advance_ctu() 10 3.602 3.604 3.606 90.86% Castro::do_advance_ctu() 10 3.602 3.604 3.606 90.86% Castro::construct_ctu_hydro_source() 10 2.722 2.726 2.73 68.77% check_for_negative_density() 10 0.04266 0.2191 0.3856 9.72% Gravity::make_radial_gravity() 21 0.3162 0.3309 0.348 8.77% AmrLevel::FillPatch() 41 0.2569 0.2776 0.2926 7.37% FillPatchIterator::Initialize 41 0.2193 0.2304 0.2387 6.01% Castro::initialize_do_advance() 10 0.2114 0.2265 0.2373 5.98% Gravity::get_new_grav_vector() 11 0.2255 0.2262 0.2267 5.71% Amr::init() 1 0.2099 0.2138 0.2177 5.48% Castro::construct_old_gravity() 10 0.1907 0.2027 0.2169 5.46% Gravity::get_old_grav_vector() 10 0.1898 0.2018 0.2163 5.45% Amr::initialInit() 1 0.1941 0.1977 0.2016 5.08% Castro::construct_new_gravity() 10 0.1993 0.2004 0.2013 5.07% Castro::expand_state() 10 0.1412 0.1582 0.1713 4.31% Amr::InitializeInit() 1 0.06515 0.11 0.1642 4.14% Amr::defBaseLevel() 1 0.06514 0.11 0.1642 4.14% FillPatchIterator::FillFromLevel0() 41 0.1532 0.1571 0.1607 4.05% FillPatchSingleLevel 41 0.153 0.157 0.1605 4.04% Castro::initData() 1 0.04235 0.08632 0.1387 3.49% Amr::FinalizeInit() 1 0.03011 0.08774 0.1364 3.44% Castro::do_old_sources() 10 0.1314 0.1324 0.1331 3.35% Castro::estTimeStep() 21 0.02382 0.08504 0.1305 3.29% Castro::clean_state() 62 0.1205 0.123 0.1265 3.19% FabArray::ParallelCopy() 41 0.1139 0.1188 0.1228 3.09% amrex::Copy() 193 0.09917 0.111 0.1227 3.09% Castro::computeInitialDt() 2 0.002485 0.06034 0.109 2.75% FabArray::setVal() 143 0.08948 0.09382 0.09826 2.48% Castro::initialize_advance() 10 0.09124 0.09337 0.09603 2.42% Castro::do_new_sources() 10 0.07475 0.07896 0.08353 2.10% Castro::computeTemp() 63 0.06651 0.06956 0.07212 1.82% FabArray::ParallelCopy_nowait() 41 0.05852 0.06221 0.066 1.66% FabArray::ParallelCopy_finish() 41 0.05214 0.05645 0.06031 1.52% Castro::reset_internal_energy(MultiFab) 63 0.04784 0.05009 0.05187 1.31% Castro::reset_internal_energy(Fab) 1008 0.04753 0.04976 0.05153 1.30% Castro::normalize_species() 62 0.04593 0.04698 0.04816 1.21% Castro::construct_new_source() 50 0.03664 0.04015 0.04536 1.14% StateDataPhysBCFunct::() 41 0.0347 0.03807 0.04034 1.02% StateData::FillBoundary(geom) 41 0.03457 0.03794 0.04021 1.01% Castro::construct_new_gravity_source() 10 0.02931 0.03226 0.03708 0.93% Amr::writePlotFile() 2 0.02872 0.02897 0.02929 0.74% Castro::post_init() 1 0.02666 0.02693 0.02708 0.68% Gravity::interpolate_monopole_grav() 21 0.02645 0.02663 0.02706 0.68% Castro::finalize_do_advance() 10 0.01192 0.01745 0.02249 0.57% FabArray::setDomainBndry() 41 0.01694 0.01982 0.02223 0.56% Castro::apply_source_to_state() 20 0.01652 0.01865 0.02036 0.51% FabArray::Saxpy() 20 0.01646 0.01857 0.02027 0.51% Castro::post_timestep() 10 0.0154 0.01584 0.01642 0.41% Castro::Castro() 1 0.009576 0.01239 0.01638 0.41% Castro::check_for_nan() 20 0.01192 0.01413 0.01587 0.40% MultiFab::contains_nan() 20 0.01187 0.01409 0.01584 0.40% Castro::construct_old_source() 50 0.01515 0.01535 0.01563 0.39% Castro::construct_old_gravity_source() 10 0.01504 0.01525 0.01553 0.39% VisMF::Write(FabArray) 2 0.01003 0.01152 0.01549 0.39% Castro::initMFs() 1 0.006542 0.008749 0.01203 0.30% AmrLevel::AmrLevel(dm) 1 0.005404 0.007306 0.009543 0.24% StateData::define() 4 0.005394 0.007291 0.009523 0.24% Castro::computeNewDt() 9 0.008557 0.008585 0.008607 0.22% Other 256 0.01705 0.02826 0.03874 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 40 B 62 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8647 KiB 8655 KiB 8659 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6736 KiB 6747 KiB 6754 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7120 KiB 7131 KiB 7138 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4535 KiB 4541 KiB 4546 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 245 KiB 268 KiB 285 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2796 KiB 2801 KiB 2804 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 203 KiB 212 KiB 223 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 43 KiB 46 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2023 KiB 2026 KiB 2027 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 73 KiB 73 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 61 KiB 65 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized