Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:21:05 UTC on 2025-07-01. Successfully read inputs file ... Castro git describe: 25.06-14-g32acc80ca AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.06-27-gf9e91b38 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015657035 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348740992 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.322731513 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.323952776 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.31465608 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363459156 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.304900147 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.294737566 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.294491868 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295146633 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295558884 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007634037 seconds Ending run at 05:21:08 UTC on 2025-07-01. Run time = 3.342874379 Run time without initialization = 3.170943155 Average number of zones advanced per microsecond: 0.827 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3385 ... 3.3414 ... 3.3429 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1563 2.2143 2.2593 67.58% Gravity::make_radial_gravity() 21 0.2944 0.3049 0.3158 9.45% check_for_negative_density() 10 0.0269 0.08461 0.1405 4.20% Castro::initData() 1 0.03731 0.07202 0.1016 3.04% amrex::Copy() 193 0.06706 0.07913 0.09477 2.84% Castro::estTimeStep() 21 0.02404 0.05741 0.09476 2.83% FabArray::ParallelCopy_finish() 41 0.04359 0.05543 0.08988 2.69% FabArray::setVal() 143 0.05213 0.06553 0.07152 2.14% Castro::normalize_species() 62 0.04707 0.04843 0.05062 1.51% Castro::reset_internal_energy(Fab) 1008 0.04253 0.04556 0.04846 1.45% FabArray::ParallelCopy_nowait() 41 0.03737 0.0408 0.04237 1.27% StateData::FillBoundary(geom) 41 0.02864 0.03271 0.03995 1.20% FillPatchIterator::Initialize 41 0.02769 0.03219 0.03506 1.05% Gravity::interpolate_monopole_grav() 21 0.02651 0.02707 0.02845 0.85% Castro::construct_new_gravity_source() 10 0.02305 0.0248 0.02697 0.81% Castro::computeTemp() 63 0.01706 0.01818 0.01945 0.58% Castro::initialize_do_advance() 10 0.01162 0.01614 0.01722 0.52% Castro::initialize_advance() 10 0.005283 0.0107 0.01355 0.41% FabArray::Saxpy() 20 0.0104 0.01212 0.01342 0.40% FabArray::setDomainBndry() 41 0.00686 0.009962 0.01257 0.38% MultiFab::contains_nan() 20 0.01027 0.01132 0.01226 0.37% VisMF::Write(FabArray) 2 0.008483 0.009549 0.01203 0.36% Amr::writePlotFile() 2 0.008766 0.01052 0.01172 0.35% Castro::construct_old_gravity_source() 10 0.007266 0.009254 0.009906 0.30% Castro::initMFs() 1 0.006529 0.006967 0.00883 0.26% Castro::construct_new_source() 50 0.005699 0.006063 0.006258 0.19% main() 1 0.00345 0.003979 0.004359 0.13% Gravity::get_new_grav_vector() 11 0.002906 0.003376 0.003753 0.11% Amr::coarseTimeStep() 10 0.0009957 0.001838 0.003052 0.09% Gravity::get_old_grav_vector() 10 0.001554 0.00201 0.002377 0.07% Castro::finalize_do_advance() 10 0.0005782 0.001132 0.001284 0.04% AmrLevel::FillPatch() 41 0.0007691 0.0009513 0.001073 0.03% Amr::timeStep() 10 0.0001285 0.0001842 0.0004393 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002744 0.0002876 0.0003009 0.01% Castro::do_advance_ctu() 10 0.000143 0.0001564 0.0001811 0.01% Castro::clean_state() 62 0.000148 0.0001608 0.0001748 0.01% StateDataPhysBCFunct::() 41 9.512e-05 0.0001211 0.0001428 0.00% FillPatchIterator::FillFromLevel0() 41 9.452e-05 0.0001067 0.0001174 0.00% Castro::Castro() 1 4.461e-05 7.601e-05 0.0001048 0.00% Castro::do_old_sources() 10 7.895e-05 8.86e-05 9.913e-05 0.00% FillPatchSingleLevel 41 7.173e-05 8.015e-05 9.016e-05 0.00% Amr::FinalizeInit() 1 3.635e-06 1.524e-05 8.949e-05 0.00% FabArray::ParallelCopy() 41 8.093e-05 8.586e-05 8.856e-05 0.00% Castro::construct_old_source() 50 5.228e-05 6.403e-05 8.212e-05 0.00% Castro::do_new_sources() 10 5.463e-05 6e-05 6.515e-05 0.00% Castro::apply_source_to_state() 20 4.032e-05 4.951e-05 5.613e-05 0.00% Castro::subcycle_advance_ctu() 10 4.264e-05 4.747e-05 5.39e-05 0.00% Amr::defBaseLevel() 1 3.602e-05 4.36e-05 4.924e-05 0.00% Castro::advance() 10 4.074e-05 4.387e-05 4.844e-05 0.00% Castro::construct_old_gravity() 10 3.349e-05 3.938e-05 4.61e-05 0.00% Castro::construct_new_gravity() 10 3.158e-05 3.597e-05 4.319e-05 0.00% Castro::expand_state() 10 2.103e-05 2.575e-05 3.485e-05 0.00% Castro::check_for_nan() 20 2.465e-05 2.635e-05 2.797e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.018e-05 1.245e-05 2.011e-05 0.00% Castro::post_init() 1 1.355e-05 1.565e-05 1.915e-05 0.00% Castro::post_timestep() 10 1.385e-05 1.586e-05 1.689e-05 0.00% Castro::computeNewDt() 9 8.832e-06 9.768e-06 1.138e-05 0.00% Amr::InitializeInit() 1 2.638e-06 3.46e-06 5.865e-06 0.00% Castro::computeInitialDt() 2 3.211e-06 3.717e-06 4.592e-06 0.00% Amr::init() 1 1.918e-06 2.31e-06 3.127e-06 0.00% Amr::initialInit() 1 1.536e-06 1.799e-06 2.137e-06 0.00% Other 260 0.01584 0.02048 0.02372 0.71% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.338 3.341 3.343 100.00% Amr::coarseTimeStep() 10 3.159 3.159 3.159 94.50% Amr::timeStep() 10 3.146 3.147 3.148 94.17% Castro::advance() 10 3.13 3.131 3.131 93.67% Castro::subcycle_advance_ctu() 10 3.053 3.059 3.074 91.94% Castro::do_advance_ctu() 10 3.053 3.059 3.074 91.94% Castro::construct_ctu_hydro_source() 10 2.309 2.321 2.325 69.56% Gravity::make_radial_gravity() 21 0.31 0.3209 0.3305 9.89% AmrLevel::FillPatch() 41 0.1879 0.2041 0.2182 6.53% Gravity::get_new_grav_vector() 11 0.2145 0.2159 0.2174 6.50% Castro::construct_old_gravity() 10 0.1799 0.1879 0.1953 5.84% Gravity::get_old_grav_vector() 10 0.1792 0.1872 0.1946 5.82% FillPatchIterator::Initialize 41 0.1589 0.1716 0.1929 5.77% Castro::construct_new_gravity() 10 0.1884 0.1896 0.1903 5.69% Castro::initialize_do_advance() 10 0.1518 0.1625 0.1717 5.14% Amr::init() 1 0.1678 0.1704 0.1716 5.13% FillPatchIterator::FillFromLevel0() 41 0.1205 0.1294 0.1583 4.74% FillPatchSingleLevel 41 0.1204 0.1293 0.1582 4.73% Amr::initialInit() 1 0.1533 0.1554 0.1572 4.70% check_for_negative_density() 10 0.0269 0.08461 0.1405 4.20% FabArray::ParallelCopy() 41 0.08494 0.09642 0.1275 3.81% Amr::InitializeInit() 1 0.06151 0.09536 0.1244 3.72% Amr::defBaseLevel() 1 0.06151 0.09536 0.1244 3.72% Castro::clean_state() 62 0.1129 0.1178 0.1242 3.71% Castro::expand_state() 10 0.09934 0.1096 0.1239 3.71% Castro::do_old_sources() 10 0.0942 0.1006 0.1105 3.30% Castro::initData() 1 0.04138 0.07591 0.1056 3.16% Amr::FinalizeInit() 1 0.03081 0.06002 0.09569 2.86% amrex::Copy() 193 0.06706 0.07913 0.09477 2.84% Castro::estTimeStep() 21 0.02404 0.05741 0.09476 2.83% FabArray::ParallelCopy_finish() 41 0.04359 0.05543 0.08988 2.69% Castro::initialize_advance() 10 0.05339 0.06854 0.07441 2.23% FabArray::setVal() 143 0.05213 0.06553 0.07152 2.14% Castro::do_new_sources() 10 0.06102 0.0641 0.06871 2.06% Castro::computeTemp() 63 0.06019 0.06403 0.06821 2.04% Castro::computeInitialDt() 2 0.002189 0.03182 0.06684 2.00% Castro::normalize_species() 62 0.04707 0.04843 0.05062 1.51% Castro::reset_internal_energy(MultiFab) 63 0.04281 0.04585 0.04876 1.46% Castro::reset_internal_energy(Fab) 1008 0.04253 0.04556 0.04846 1.45% FabArray::ParallelCopy_nowait() 41 0.03749 0.0409 0.04245 1.27% StateDataPhysBCFunct::() 41 0.02877 0.03283 0.04006 1.20% StateData::FillBoundary(geom) 41 0.02864 0.03271 0.03995 1.20% Castro::construct_new_source() 50 0.02911 0.03087 0.03314 0.99% Gravity::interpolate_monopole_grav() 21 0.02651 0.02707 0.02845 0.85% Castro::post_init() 1 0.02686 0.02764 0.02826 0.85% Castro::construct_new_gravity_source() 10 0.02305 0.0248 0.02697 0.81% Amr::writePlotFile() 2 0.02208 0.02273 0.02353 0.70% Castro::finalize_do_advance() 10 0.01249 0.01797 0.02198 0.66% Castro::post_timestep() 10 0.01479 0.01625 0.01697 0.51% Castro::apply_source_to_state() 20 0.01044 0.01217 0.01348 0.40% FabArray::Saxpy() 20 0.0104 0.01212 0.01342 0.40% FabArray::setDomainBndry() 41 0.00686 0.009962 0.01257 0.38% Castro::check_for_nan() 20 0.0103 0.01134 0.01229 0.37% MultiFab::contains_nan() 20 0.01027 0.01132 0.01226 0.37% VisMF::Write(FabArray) 2 0.008483 0.009549 0.01203 0.36% Castro::Castro() 1 0.01089 0.01113 0.01188 0.36% Castro::construct_old_source() 50 0.007318 0.009318 0.009972 0.30% Castro::construct_old_gravity_source() 10 0.007266 0.009254 0.009906 0.30% Castro::initMFs() 1 0.006529 0.006967 0.00883 0.26% Castro::computeNewDt() 9 0.008734 0.008762 0.008788 0.26% AmrLevel::AmrLevel(dm) 1 0.005291 0.005669 0.006496 0.19% Other 260 0.02068 0.02808 0.03304 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 44 B 59 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8654 KiB 8665 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6763 KiB 6771 KiB 6777 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7126 KiB 7136 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4564 KiB 4573 KiB 4598 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 228 KiB 251 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2806 KiB 2810 KiB 2812 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 244 KiB 252 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 43 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2028 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 83 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 71 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized