Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:44 UTC on 2025-07-02. Successfully read inputs file ... Castro git describe: 25.07-2-gc103795ad AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015688639 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.357091673 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.331807679 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.34271422 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.323700094 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.369998662 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.299540477 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296386006 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297069265 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297604593 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298109508 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00760808 seconds Ending run at 05:17:48 UTC on 2025-07-02. Run time = 3.417770917 Run time without initialization = 3.226911075 Average number of zones advanced per microsecond: 0.812 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.4163 ... 3.4170 ... 3.4183 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1964 2.2155 2.2487 65.78% Gravity::make_radial_gravity() 21 0.3087 0.3152 0.3229 9.45% Castro::initData() 1 0.0372 0.07601 0.1219 3.56% Castro::estTimeStep() 21 0.02538 0.07515 0.118 3.45% check_for_negative_density() 10 0.05666 0.09306 0.1141 3.34% FabArray::setVal() 143 0.06422 0.07655 0.09118 2.67% amrex::Copy() 193 0.07762 0.08149 0.08758 2.56% FabArray::ParallelCopy_finish() 41 0.03947 0.06572 0.08539 2.50% Castro::normalize_species() 62 0.0466 0.04768 0.05007 1.46% Castro::reset_internal_energy(Fab) 1008 0.04272 0.0468 0.04997 1.46% FabArray::ParallelCopy_nowait() 41 0.0396 0.04225 0.04524 1.32% FillPatchIterator::Initialize 41 0.02866 0.03481 0.03962 1.16% StateData::FillBoundary(geom) 41 0.03052 0.03202 0.03536 1.03% Gravity::interpolate_monopole_grav() 21 0.02634 0.02683 0.02746 0.80% Castro::construct_new_gravity_source() 10 0.02329 0.02463 0.02572 0.75% Castro::initialize_do_advance() 10 0.01438 0.01903 0.02293 0.67% Castro::computeTemp() 63 0.01695 0.01838 0.01934 0.57% Castro::initialize_advance() 10 0.0097 0.01226 0.01484 0.43% MultiFab::contains_nan() 20 0.01048 0.01175 0.01443 0.42% FabArray::Saxpy() 20 0.01204 0.01286 0.01354 0.40% VisMF::Write(FabArray) 2 0.009322 0.009909 0.01279 0.37% FabArray::setDomainBndry() 41 0.007938 0.01049 0.01258 0.37% Amr::writePlotFile() 2 0.007838 0.01071 0.01143 0.33% Castro::construct_old_gravity_source() 10 0.008994 0.009547 0.01006 0.29% Castro::initMFs() 1 0.00658 0.007163 0.007827 0.23% Castro::construct_new_source() 50 0.005744 0.006165 0.006493 0.19% main() 1 0.003567 0.003959 0.004463 0.13% Gravity::get_new_grav_vector() 11 0.003223 0.003552 0.00379 0.11% Amr::coarseTimeStep() 10 0.00165 0.002192 0.003131 0.09% Gravity::get_old_grav_vector() 10 0.001807 0.002161 0.002606 0.08% Castro::finalize_do_advance() 10 0.00121 0.001299 0.001358 0.04% AmrLevel::FillPatch() 41 0.00076 0.0008934 0.0009983 0.03% Amr::timeStep() 10 0.0001282 0.0002015 0.000543 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002734 0.0002906 0.0003067 0.01% Castro::do_advance_ctu() 10 0.0001423 0.0001635 0.0001982 0.01% Castro::clean_state() 62 0.0001455 0.0001623 0.0001773 0.01% StateDataPhysBCFunct::() 41 0.0001047 0.0001164 0.0001313 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001014 0.0001079 0.0001262 0.00% Castro::do_old_sources() 10 7.676e-05 9.445e-05 0.0001068 0.00% FabArray::ParallelCopy() 41 8.153e-05 9.108e-05 9.722e-05 0.00% Castro::subcycle_advance_ctu() 10 3.791e-05 5.84e-05 9.299e-05 0.00% Amr::FinalizeInit() 1 3.18e-06 1.531e-05 9.255e-05 0.00% FillPatchSingleLevel 41 7.213e-05 7.83e-05 8.288e-05 0.00% Castro::construct_old_source() 50 5.62e-05 6.811e-05 7.726e-05 0.00% Castro::Castro() 1 4.42e-05 5.539e-05 7.382e-05 0.00% Castro::do_new_sources() 10 5.32e-05 6.221e-05 7.227e-05 0.00% Castro::advance() 10 3.853e-05 5.445e-05 7.152e-05 0.00% Castro::apply_source_to_state() 20 3.932e-05 5.12e-05 6.271e-05 0.00% Castro::construct_old_gravity() 10 3.504e-05 4.732e-05 6e-05 0.00% Amr::defBaseLevel() 1 3.97e-05 4.628e-05 5.352e-05 0.00% Castro::construct_new_gravity() 10 2.949e-05 3.543e-05 4.875e-05 0.00% Castro::expand_state() 10 1.989e-05 2.681e-05 3.838e-05 0.00% Castro::check_for_nan() 20 2.406e-05 2.669e-05 3.002e-05 0.00% Castro::post_timestep() 10 1.341e-05 1.734e-05 2.458e-05 0.00% Castro::post_init() 1 1.554e-05 1.767e-05 2.218e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.319e-06 1.165e-05 1.58e-05 0.00% Castro::computeNewDt() 9 8.367e-06 1.004e-05 1.273e-05 0.00% Amr::InitializeInit() 1 2.661e-06 3.596e-06 6.935e-06 0.00% Castro::computeInitialDt() 2 3.052e-06 3.656e-06 4.344e-06 0.00% Amr::init() 1 2.067e-06 2.286e-06 2.503e-06 0.00% Amr::initialInit() 1 1.623e-06 1.814e-06 2.053e-06 0.00% Other 260 0.01632 0.01912 0.02166 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.416 3.417 3.418 100.00% Amr::coarseTimeStep() 10 3.215 3.215 3.215 94.05% Amr::timeStep() 10 3.202 3.203 3.203 93.71% Castro::advance() 10 3.186 3.187 3.187 93.23% Castro::subcycle_advance_ctu() 10 3.092 3.104 3.116 91.14% Castro::do_advance_ctu() 10 3.092 3.104 3.115 91.14% Castro::construct_ctu_hydro_source() 10 2.328 2.33 2.333 68.25% Gravity::make_radial_gravity() 21 0.3244 0.3317 0.3378 9.88% AmrLevel::FillPatch() 41 0.1912 0.2183 0.237 6.93% Gravity::get_new_grav_vector() 11 0.219 0.2201 0.2213 6.47% Castro::initialize_do_advance() 10 0.1679 0.1868 0.2033 5.95% Castro::construct_old_gravity() 10 0.1914 0.1966 0.2031 5.94% FillPatchIterator::Initialize 41 0.1624 0.1858 0.2031 5.94% Gravity::get_old_grav_vector() 10 0.1907 0.1957 0.2019 5.91% Castro::construct_new_gravity() 10 0.193 0.1937 0.1945 5.69% Amr::init() 1 0.1897 0.1901 0.1908 5.58% Amr::initialInit() 1 0.1739 0.1743 0.1748 5.11% FillPatchIterator::FillFromLevel0() 41 0.1151 0.1405 0.1586 4.64% FillPatchSingleLevel 41 0.115 0.1404 0.1585 4.64% Amr::InitializeInit() 1 0.0577 0.09728 0.1438 4.21% Amr::defBaseLevel() 1 0.05769 0.09728 0.1438 4.21% Castro::expand_state() 10 0.1086 0.1291 0.143 4.18% FabArray::ParallelCopy() 41 0.08397 0.1082 0.1277 3.74% Castro::initData() 1 0.04073 0.07977 0.1258 3.68% Castro::clean_state() 62 0.1123 0.1186 0.1247 3.65% Castro::estTimeStep() 21 0.02538 0.07515 0.118 3.45% Amr::FinalizeInit() 1 0.0303 0.07702 0.1165 3.41% check_for_negative_density() 10 0.05666 0.09306 0.1141 3.34% Castro::do_old_sources() 10 0.09395 0.09727 0.1008 2.95% Castro::initialize_advance() 10 0.0675 0.07903 0.09165 2.68% FabArray::setVal() 143 0.06422 0.07655 0.09118 2.67% Castro::computeInitialDt() 2 0.002504 0.04926 0.08859 2.59% amrex::Copy() 193 0.07762 0.08149 0.08758 2.56% FabArray::ParallelCopy_finish() 41 0.03947 0.06572 0.08539 2.50% Castro::computeTemp() 63 0.05996 0.06547 0.06961 2.04% Castro::do_new_sources() 10 0.06136 0.06496 0.06817 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04301 0.04709 0.05027 1.47% Castro::normalize_species() 62 0.0466 0.04768 0.05007 1.46% Castro::reset_internal_energy(Fab) 1008 0.04272 0.0468 0.04997 1.46% FabArray::ParallelCopy_nowait() 41 0.0397 0.04235 0.04534 1.33% StateDataPhysBCFunct::() 41 0.03064 0.03214 0.03549 1.04% StateData::FillBoundary(geom) 41 0.03052 0.03202 0.03536 1.03% Castro::construct_new_source() 50 0.02934 0.0308 0.03173 0.93% Castro::post_init() 1 0.02714 0.02737 0.02769 0.81% Gravity::interpolate_monopole_grav() 21 0.02634 0.02683 0.02746 0.80% Castro::construct_new_gravity_source() 10 0.02329 0.02463 0.02572 0.75% Amr::writePlotFile() 2 0.02317 0.02351 0.02379 0.70% Castro::finalize_do_advance() 10 0.01458 0.0185 0.02265 0.66% Castro::post_timestep() 10 0.01505 0.0161 0.01661 0.49% Castro::check_for_nan() 20 0.0105 0.01178 0.01446 0.42% MultiFab::contains_nan() 20 0.01048 0.01175 0.01443 0.42% Castro::apply_source_to_state() 20 0.01209 0.01291 0.01361 0.40% FabArray::Saxpy() 20 0.01204 0.01286 0.01354 0.40% VisMF::Write(FabArray) 2 0.009322 0.009909 0.01279 0.37% FabArray::setDomainBndry() 41 0.007938 0.01049 0.01258 0.37% Castro::Castro() 1 0.01005 0.01092 0.01171 0.34% Castro::construct_old_source() 50 0.009056 0.009615 0.01014 0.30% Castro::construct_old_gravity_source() 10 0.008994 0.009547 0.01006 0.29% Castro::computeNewDt() 9 0.008687 0.008699 0.008708 0.25% Castro::initMFs() 1 0.00658 0.007163 0.007827 0.23% AmrLevel::AmrLevel(dm) 1 0.005564 0.006079 0.006776 0.20% Other 260 0.02103 0.02457 0.02833 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 35 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6726 KiB 6737 KiB 6739 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7127 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4521 KiB 4537 KiB 4550 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 211 KiB 246 KiB 269 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2791 KiB 2796 KiB 2798 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 241 KiB 247 KiB 252 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 51 KiB 62 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 73 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized