Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:47 UTC on 2025-07-03. Successfully read inputs file ... Castro git describe: 25.07-2-gc103795ad AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.0154097 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.344495767 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.324226706 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.348637766 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.317067295 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.370203428 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303702947 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297661711 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297587807 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.29664699 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296767664 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007431304 seconds Ending run at 05:17:50 UTC on 2025-07-03. Run time = 3.400161986 Run time without initialization = 3.209984195 Average number of zones advanced per microsecond: 0.817 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3980 ... 3.3991 ... 3.4003 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1849 2.2187 2.2813 67.09% Gravity::make_radial_gravity() 21 0.2873 0.3062 0.3288 9.67% check_for_negative_density() 10 0.03508 0.09997 0.1367 4.02% Castro::initData() 1 0.03698 0.0751 0.1209 3.56% Castro::estTimeStep() 21 0.02826 0.07406 0.1144 3.36% FabArray::ParallelCopy_finish() 41 0.04227 0.06939 0.09897 2.91% amrex::Copy() 193 0.06735 0.08131 0.09364 2.75% FabArray::setVal() 143 0.05693 0.06679 0.07473 2.20% Castro::normalize_species() 62 0.04492 0.04677 0.05045 1.48% Castro::reset_internal_energy(Fab) 1008 0.04532 0.04644 0.04746 1.40% FabArray::ParallelCopy_nowait() 41 0.03422 0.04061 0.04228 1.24% FillPatchIterator::Initialize 41 0.0274 0.03396 0.04186 1.23% StateData::FillBoundary(geom) 41 0.02894 0.03166 0.0342 1.01% Gravity::interpolate_monopole_grav() 21 0.02652 0.02712 0.0291 0.86% Castro::construct_new_gravity_source() 10 0.02255 0.02345 0.02512 0.74% Castro::computeTemp() 63 0.01801 0.01824 0.01909 0.56% Castro::initialize_do_advance() 10 0.01148 0.01624 0.01789 0.53% MultiFab::contains_nan() 20 0.01054 0.01239 0.01602 0.47% Amr::writePlotFile() 2 0.007646 0.01112 0.01398 0.41% Castro::initialize_advance() 10 0.005328 0.01047 0.01368 0.40% FabArray::Saxpy() 20 0.01002 0.01203 0.01328 0.39% VisMF::Write(FabArray) 2 0.008429 0.009773 0.01277 0.38% FabArray::setDomainBndry() 41 0.006732 0.0104 0.01247 0.37% Castro::construct_old_gravity_source() 10 0.006011 0.00862 0.009326 0.27% Castro::initMFs() 1 0.006539 0.007189 0.008399 0.25% Castro::construct_new_source() 50 0.005734 0.006067 0.006443 0.19% main() 1 0.003747 0.004248 0.005029 0.15% Gravity::get_new_grav_vector() 11 0.00278 0.00355 0.004004 0.12% Amr::coarseTimeStep() 10 0.001768 0.002534 0.003122 0.09% Gravity::get_old_grav_vector() 10 0.001579 0.0021 0.002495 0.07% Castro::finalize_do_advance() 10 0.0005098 0.001217 0.00177 0.05% AmrLevel::FillPatch() 41 0.0006873 0.000974 0.001221 0.04% Amr::timeStep() 10 0.0001363 0.0001818 0.0003865 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002706 0.0002847 0.0003049 0.01% Castro::do_advance_ctu() 10 0.0001419 0.0001725 0.0001986 0.01% Castro::clean_state() 62 0.0001458 0.000155 0.0001843 0.01% StateDataPhysBCFunct::() 41 0.0001059 0.0001225 0.0001611 0.00% FillPatchIterator::FillFromLevel0() 41 9.175e-05 0.0001089 0.0001295 0.00% Castro::do_old_sources() 10 8.018e-05 8.751e-05 0.0001017 0.00% FabArray::ParallelCopy() 41 7.774e-05 8.943e-05 9.948e-05 0.00% FillPatchSingleLevel 41 7.193e-05 8.257e-05 9.194e-05 0.00% Castro::Castro() 1 4.583e-05 6.581e-05 8.547e-05 0.00% Castro::construct_old_source() 50 4.858e-05 6.468e-05 7.69e-05 0.00% Amr::FinalizeInit() 1 3.565e-06 1.391e-05 7.241e-05 0.00% Castro::do_new_sources() 10 5.627e-05 6.428e-05 7.18e-05 0.00% Castro::apply_source_to_state() 20 3.808e-05 5.271e-05 6.398e-05 0.00% Castro::construct_old_gravity() 10 3.664e-05 4.522e-05 5.463e-05 0.00% Castro::subcycle_advance_ctu() 10 4.063e-05 4.721e-05 5.459e-05 0.00% Castro::advance() 10 4.029e-05 4.5e-05 5.233e-05 0.00% Amr::defBaseLevel() 1 3.419e-05 3.783e-05 4.405e-05 0.00% Castro::construct_new_gravity() 10 2.979e-05 3.585e-05 4.292e-05 0.00% Castro::expand_state() 10 1.954e-05 2.352e-05 2.899e-05 0.00% Castro::check_for_nan() 20 2.321e-05 2.606e-05 2.869e-05 0.00% Castro::post_init() 1 1.312e-05 1.61e-05 2.823e-05 0.00% Castro::post_timestep() 10 1.512e-05 1.694e-05 2.029e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.767e-06 1.105e-05 1.302e-05 0.00% Castro::computeNewDt() 9 8.598e-06 9.647e-06 1.047e-05 0.00% Amr::InitializeInit() 1 2.709e-06 3.575e-06 6.137e-06 0.00% Castro::computeInitialDt() 2 3.157e-06 3.74e-06 4.285e-06 0.00% Amr::init() 1 1.872e-06 2.227e-06 2.625e-06 0.00% Amr::initialInit() 1 1.407e-06 1.789e-06 2.001e-06 0.00% Other 260 0.01571 0.01852 0.02151 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.398 3.399 3.4 100.00% Amr::coarseTimeStep() 10 3.198 3.198 3.198 94.04% Amr::timeStep() 10 3.185 3.185 3.186 93.70% Castro::advance() 10 3.169 3.169 3.17 93.23% Castro::subcycle_advance_ctu() 10 3.094 3.099 3.111 91.48% Castro::do_advance_ctu() 10 3.094 3.099 3.111 91.48% Castro::construct_ctu_hydro_source() 10 2.337 2.34 2.343 68.91% Gravity::make_radial_gravity() 21 0.3031 0.3222 0.3414 10.04% AmrLevel::FillPatch() 41 0.2009 0.2199 0.2315 6.81% Castro::construct_old_gravity() 10 0.1834 0.1997 0.2184 6.42% Gravity::get_old_grav_vector() 10 0.1823 0.1989 0.2179 6.41% Gravity::get_new_grav_vector() 11 0.2067 0.2086 0.2096 6.16% FillPatchIterator::Initialize 41 0.1672 0.1865 0.1981 5.83% Castro::initialize_do_advance() 10 0.1708 0.1781 0.1911 5.62% Amr::init() 1 0.1887 0.1895 0.1899 5.58% Castro::construct_new_gravity() 10 0.182 0.1831 0.1841 5.41% Amr::initialInit() 1 0.1722 0.1736 0.1743 5.13% FillPatchIterator::FillFromLevel0() 41 0.1185 0.1422 0.164 4.82% FillPatchSingleLevel 41 0.1184 0.1421 0.1639 4.82% Amr::InitializeInit() 1 0.0581 0.09658 0.1434 4.22% Amr::defBaseLevel() 1 0.0581 0.09657 0.1434 4.22% check_for_negative_density() 10 0.03508 0.09997 0.1367 4.02% FabArray::ParallelCopy() 41 0.0843 0.1102 0.1334 3.92% Castro::expand_state() 10 0.1159 0.123 0.132 3.88% Castro::initData() 1 0.04087 0.0789 0.1248 3.67% Castro::clean_state() 62 0.1134 0.1168 0.1212 3.56% Amr::FinalizeInit() 1 0.02991 0.07705 0.1154 3.39% Castro::estTimeStep() 21 0.02826 0.07406 0.1144 3.36% Castro::do_old_sources() 10 0.0933 0.1013 0.1051 3.09% FabArray::ParallelCopy_finish() 41 0.04227 0.06939 0.09897 2.91% amrex::Copy() 193 0.06735 0.08131 0.09364 2.75% Castro::computeInitialDt() 2 0.002494 0.05013 0.08874 2.61% FabArray::setVal() 143 0.05693 0.06679 0.07473 2.20% Castro::initialize_advance() 10 0.05476 0.06755 0.07213 2.12% Castro::do_new_sources() 10 0.059 0.06254 0.0669 1.97% Castro::computeTemp() 63 0.06362 0.06496 0.06685 1.97% Castro::normalize_species() 62 0.04492 0.04677 0.05045 1.48% Castro::reset_internal_energy(MultiFab) 63 0.0456 0.04673 0.04777 1.40% Castro::reset_internal_energy(Fab) 1008 0.04532 0.04644 0.04746 1.40% FabArray::ParallelCopy_nowait() 41 0.03434 0.04071 0.04236 1.25% StateDataPhysBCFunct::() 41 0.02908 0.03178 0.03436 1.01% StateData::FillBoundary(geom) 41 0.02894 0.03166 0.0342 1.01% Castro::construct_new_source() 50 0.02835 0.02951 0.03127 0.92% Gravity::interpolate_monopole_grav() 21 0.02652 0.02712 0.0291 0.86% Castro::post_init() 1 0.02609 0.02652 0.02693 0.79% Castro::construct_new_gravity_source() 10 0.02255 0.02345 0.02512 0.74% Amr::writePlotFile() 2 0.0229 0.0234 0.02408 0.71% Castro::finalize_do_advance() 10 0.01138 0.01674 0.02061 0.61% Castro::post_timestep() 10 0.01536 0.01586 0.01731 0.51% Castro::check_for_nan() 20 0.01057 0.01242 0.01605 0.47% MultiFab::contains_nan() 20 0.01054 0.01239 0.01602 0.47% Castro::apply_source_to_state() 20 0.01006 0.01208 0.01334 0.39% FabArray::Saxpy() 20 0.01002 0.01203 0.01328 0.39% VisMF::Write(FabArray) 2 0.008429 0.009773 0.01277 0.38% FabArray::setDomainBndry() 41 0.006732 0.0104 0.01247 0.37% Castro::Castro() 1 0.01006 0.01094 0.01169 0.34% Castro::construct_old_source() 50 0.00606 0.008685 0.009398 0.28% Castro::construct_old_gravity_source() 10 0.006011 0.00862 0.009326 0.27% Castro::computeNewDt() 9 0.008411 0.008427 0.008441 0.25% Castro::initMFs() 1 0.006539 0.007189 0.008399 0.25% AmrLevel::AmrLevel(dm) 1 0.005459 0.005878 0.007014 0.21% Other 260 0.02019 0.02419 0.02807 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6729 KiB 6736 KiB 6741 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4547 KiB 4553 KiB 4573 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 224 KiB 244 KiB 256 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2793 KiB 2796 KiB 2797 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 227 KiB 241 KiB 256 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 49 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 75 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized