Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:44 UTC on 2025-07-04. Successfully read inputs file ... Castro git describe: 25.07-2-gc103795ad AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015496672 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.351886853 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.3478373 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315205835 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314989871 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371769598 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303752159 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295521569 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295108039 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296054541 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302027649 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007852952 seconds Ending run at 05:17:47 UTC on 2025-07-04. Run time = 3.375397036 Run time without initialization = 3.207536101 Average number of zones advanced per microsecond: 0.817 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3744 ... 3.3750 ... 3.3754 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1580 2.2261 2.2591 66.93% Gravity::make_radial_gravity() 21 0.2911 0.2981 0.3133 9.28% check_for_negative_density() 10 0.05548 0.09376 0.1596 4.73% FabArray::ParallelCopy_finish() 41 0.03915 0.0624 0.1059 3.14% Castro::initData() 1 0.03755 0.07171 0.1022 3.03% Castro::estTimeStep() 21 0.02341 0.05768 0.09422 2.79% amrex::Copy() 193 0.07368 0.08188 0.09125 2.70% FabArray::setVal() 143 0.05343 0.0662 0.07142 2.12% Castro::normalize_species() 62 0.04534 0.04669 0.05252 1.56% Castro::reset_internal_energy(Fab) 1008 0.04342 0.0462 0.04871 1.44% FabArray::ParallelCopy_nowait() 41 0.03648 0.04209 0.0467 1.38% FillPatchIterator::Initialize 41 0.02724 0.03473 0.03943 1.17% StateData::FillBoundary(geom) 41 0.02849 0.0319 0.03522 1.04% Gravity::interpolate_monopole_grav() 21 0.02653 0.02671 0.02691 0.80% Castro::construct_new_gravity_source() 10 0.02347 0.02456 0.0266 0.79% Castro::construct_old_gravity_source() 10 0.007319 0.01095 0.02059 0.61% FabArray::Saxpy() 20 0.01121 0.01529 0.01971 0.58% Castro::computeTemp() 63 0.01742 0.01815 0.0187 0.55% Castro::initialize_do_advance() 10 0.01144 0.01653 0.01794 0.53% Castro::initialize_advance() 10 0.005402 0.01072 0.01406 0.42% VisMF::Write(FabArray) 2 0.009233 0.01001 0.01333 0.40% FabArray::setDomainBndry() 41 0.006859 0.01072 0.01274 0.38% MultiFab::contains_nan() 20 0.01081 0.01138 0.01246 0.37% Castro::enforce_min_density() 62 0.005776 0.006827 0.01242 0.37% Amr::writePlotFile() 2 0.008129 0.01057 0.01121 0.33% Castro::initMFs() 1 0.006607 0.006996 0.007987 0.24% Castro::construct_new_source() 50 0.005729 0.006125 0.006431 0.19% main() 1 0.003629 0.004158 0.004668 0.14% Gravity::get_new_grav_vector() 11 0.003202 0.003619 0.003899 0.12% Amr::coarseTimeStep() 10 0.001529 0.002952 0.003805 0.11% Gravity::get_old_grav_vector() 10 0.001468 0.002112 0.002754 0.08% Castro::finalize_do_advance() 10 0.0004915 0.001151 0.001287 0.04% AmrLevel::FillPatch() 41 0.0007576 0.0009944 0.001165 0.03% Amr::timeStep() 10 0.0001394 0.0001844 0.0003837 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002703 0.0002846 0.0003117 0.01% Castro::do_advance_ctu() 10 0.0001195 0.0001626 0.0001889 0.01% Castro::clean_state() 62 0.0001482 0.0001699 0.0001855 0.01% StateDataPhysBCFunct::() 41 9.45e-05 0.0001206 0.0001469 0.00% Castro::construct_old_source() 50 4.741e-05 7.669e-05 0.0001355 0.00% FabArray::ParallelCopy() 41 7.624e-05 9.25e-05 0.0001169 0.00% FillPatchIterator::FillFromLevel0() 41 9.499e-05 0.000105 0.000111 0.00% Castro::do_old_sources() 10 7.219e-05 9.41e-05 0.0001087 0.00% FillPatchSingleLevel 41 7.18e-05 8.186e-05 9.396e-05 0.00% Castro::apply_source_to_state() 20 4.127e-05 6.358e-05 9.132e-05 0.00% Castro::Castro() 1 4.228e-05 7.052e-05 9.108e-05 0.00% Amr::FinalizeInit() 1 3.904e-06 1.548e-05 8.137e-05 0.00% Castro::do_new_sources() 10 5.029e-05 6.244e-05 7.097e-05 0.00% Castro::advance() 10 3.706e-05 4.534e-05 5.485e-05 0.00% Amr::defBaseLevel() 1 3.64e-05 4.429e-05 5.308e-05 0.00% Castro::subcycle_advance_ctu() 10 4.222e-05 4.7e-05 5.307e-05 0.00% Castro::construct_old_gravity() 10 3.374e-05 3.968e-05 5.092e-05 0.00% Castro::construct_new_gravity() 10 3.046e-05 3.608e-05 4.174e-05 0.00% Castro::check_for_nan() 20 2.323e-05 2.7e-05 3.479e-05 0.00% Castro::expand_state() 10 2.172e-05 2.678e-05 3.391e-05 0.00% Castro::post_timestep() 10 1.464e-05 1.611e-05 2.044e-05 0.00% Castro::post_init() 1 1.344e-05 1.525e-05 1.821e-05 0.00% Castro::computeNewDt() 9 8.612e-06 9.86e-06 1.143e-05 0.00% Amr::InitializeInit() 1 2.709e-06 3.788e-06 6.5e-06 0.00% Amr::init() 1 1.913e-06 2.928e-06 5.411e-06 0.00% Castro::computeInitialDt() 2 2.974e-06 3.847e-06 4.419e-06 0.00% Amr::initialInit() 1 1.725e-06 2.031e-06 2.43e-06 0.00% Other 199 0.009548 0.01312 0.01512 0.45% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.374 3.375 3.375 100.00% Amr::coarseTimeStep() 10 3.195 3.195 3.195 94.66% Amr::timeStep() 10 3.182 3.182 3.184 94.32% Castro::advance() 10 3.166 3.166 3.167 93.81% Castro::subcycle_advance_ctu() 10 3.09 3.094 3.107 92.06% Castro::do_advance_ctu() 10 3.09 3.094 3.107 92.06% Castro::construct_ctu_hydro_source() 10 2.336 2.341 2.347 69.52% Gravity::make_radial_gravity() 21 0.3084 0.3154 0.328 9.72% AmrLevel::FillPatch() 41 0.2045 0.2158 0.2349 6.96% Gravity::get_new_grav_vector() 11 0.2074 0.2096 0.2106 6.24% FillPatchIterator::Initialize 41 0.1678 0.1823 0.2054 6.09% Castro::construct_old_gravity() 10 0.1842 0.1883 0.2006 5.94% Gravity::get_old_grav_vector() 10 0.1834 0.1877 0.2 5.92% Castro::construct_new_gravity() 10 0.1839 0.1854 0.1864 5.52% FillPatchIterator::FillFromLevel0() 41 0.1165 0.1369 0.1714 5.08% FillPatchSingleLevel 41 0.1164 0.1368 0.1712 5.07% Castro::initialize_do_advance() 10 0.1629 0.1679 0.1704 5.05% Amr::init() 1 0.1666 0.1676 0.168 4.98% check_for_negative_density() 10 0.05548 0.09376 0.1596 4.73% Amr::initialInit() 1 0.151 0.1523 0.1529 4.53% FabArray::ParallelCopy() 41 0.08235 0.1047 0.1425 4.22% Castro::clean_state() 62 0.1119 0.1175 0.1262 3.74% Amr::InitializeInit() 1 0.05889 0.09349 0.1237 3.66% Amr::defBaseLevel() 1 0.05889 0.09349 0.1236 3.66% Castro::expand_state() 10 0.1094 0.1144 0.1221 3.62% Castro::do_old_sources() 10 0.1076 0.1142 0.1189 3.52% Castro::initData() 1 0.04091 0.07553 0.1061 3.14% FabArray::ParallelCopy_finish() 41 0.03915 0.0624 0.1059 3.14% Castro::estTimeStep() 21 0.02341 0.05768 0.09422 2.79% Amr::FinalizeInit() 1 0.02824 0.0588 0.09272 2.75% amrex::Copy() 193 0.07368 0.08188 0.09125 2.70% Castro::initialize_advance() 10 0.05495 0.06871 0.07281 2.16% FabArray::setVal() 143 0.05343 0.0662 0.07142 2.12% Castro::do_new_sources() 10 0.06112 0.06386 0.06852 2.03% Castro::computeTemp() 63 0.06111 0.06464 0.06769 2.01% Castro::computeInitialDt() 2 0.002293 0.03288 0.06685 1.98% Castro::normalize_species() 62 0.04534 0.04669 0.05252 1.56% Castro::reset_internal_energy(MultiFab) 63 0.04369 0.04649 0.04899 1.45% Castro::reset_internal_energy(Fab) 1008 0.04342 0.0462 0.04871 1.44% FabArray::ParallelCopy_nowait() 41 0.03659 0.04219 0.0468 1.39% StateDataPhysBCFunct::() 41 0.02863 0.03202 0.03535 1.05% StateData::FillBoundary(geom) 41 0.02849 0.0319 0.03522 1.04% Castro::construct_new_source() 50 0.0295 0.03068 0.0329 0.97% Gravity::interpolate_monopole_grav() 21 0.02653 0.02671 0.02691 0.80% Castro::construct_new_gravity_source() 10 0.02347 0.02456 0.0266 0.79% Castro::post_init() 1 0.02484 0.02549 0.02573 0.76% Amr::writePlotFile() 2 0.02306 0.02324 0.02362 0.70% Castro::construct_old_source() 50 0.007366 0.01103 0.02073 0.61% Castro::construct_old_gravity_source() 10 0.007319 0.01095 0.02059 0.61% Castro::finalize_do_advance() 10 0.01298 0.01749 0.02019 0.60% Castro::apply_source_to_state() 20 0.01125 0.01535 0.01979 0.59% FabArray::Saxpy() 20 0.01121 0.01529 0.01971 0.58% Castro::post_timestep() 10 0.01515 0.01597 0.01779 0.53% VisMF::Write(FabArray) 2 0.009233 0.01001 0.01333 0.40% FabArray::setDomainBndry() 41 0.006859 0.01072 0.01274 0.38% Castro::check_for_nan() 20 0.01084 0.01141 0.01249 0.37% MultiFab::contains_nan() 20 0.01081 0.01138 0.01246 0.37% Castro::enforce_min_density() 62 0.005776 0.006827 0.01242 0.37% Castro::Castro() 1 0.01051 0.01108 0.01198 0.36% Castro::computeNewDt() 9 0.00847 0.008481 0.008502 0.25% Castro::initMFs() 1 0.006607 0.006996 0.007987 0.24% Other 199 0.01973 0.02488 0.02818 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 37 B 66 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6778 KiB 6780 KiB 6783 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4574 KiB 4579 KiB 4596 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 227 KiB 239 KiB 261 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2810 KiB 2813 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 238 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 46 KiB 65 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized