Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:18:07 UTC on 2025-07-07. Successfully read inputs file ... Castro git describe: 25.07-4-gdb3449db8 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07-3-g3881c8fa reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01468917 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.333425249 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.319031513 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315844185 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316558953 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.38688237 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30838586 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298867604 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299750576 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300104123 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295892062 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007489279 seconds Ending run at 05:18:11 UTC on 2025-07-07. Run time = 3.375640585 Run time without initialization = 3.187269242 Average number of zones advanced per microsecond: 0.822 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3741 ... 3.3749 ... 3.3759 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2014 2.2377 2.3033 68.23% Gravity::make_radial_gravity() 21 0.2922 0.3013 0.3192 9.46% check_for_negative_density() 10 0.02436 0.09212 0.1336 3.96% Castro::initData() 1 0.0374 0.07276 0.1218 3.61% Castro::estTimeStep() 21 0.02285 0.07764 0.1158 3.43% FabArray::ParallelCopy_finish() 41 0.03721 0.04728 0.08522 2.52% amrex::Copy() 193 0.05998 0.0775 0.08215 2.43% FabArray::setVal() 143 0.05345 0.06455 0.07011 2.08% Castro::normalize_species() 62 0.04567 0.04714 0.05075 1.50% Castro::reset_internal_energy(Fab) 1008 0.04562 0.04637 0.04857 1.44% FabArray::ParallelCopy_nowait() 41 0.03282 0.04103 0.04436 1.31% FillPatchIterator::Initialize 41 0.02615 0.03235 0.03585 1.06% StateData::FillBoundary(geom) 41 0.02822 0.03147 0.03397 1.01% Gravity::interpolate_monopole_grav() 21 0.02646 0.02683 0.0273 0.81% Castro::construct_new_gravity_source() 10 0.0232 0.02425 0.02585 0.77% Castro::computeTemp() 63 0.0179 0.01825 0.01857 0.55% Castro::initialize_do_advance() 10 0.01156 0.01559 0.01755 0.52% FabArray::setDomainBndry() 41 0.006298 0.01072 0.0138 0.41% Castro::initialize_advance() 10 0.005319 0.01033 0.01335 0.40% FabArray::Saxpy() 20 0.01033 0.01224 0.01317 0.39% Amr::writePlotFile() 2 0.007593 0.01029 0.01289 0.38% VisMF::Write(FabArray) 2 0.008428 0.00967 0.01211 0.36% MultiFab::contains_nan() 20 0.01046 0.01096 0.01194 0.35% Castro::construct_old_gravity_source() 10 0.006577 0.009134 0.009719 0.29% Castro::initMFs() 1 0.006505 0.007018 0.008519 0.25% Castro::construct_new_source() 50 0.005529 0.006099 0.006311 0.19% main() 1 0.00367 0.004296 0.00448 0.13% Gravity::get_new_grav_vector() 11 0.002783 0.003538 0.004001 0.12% Amr::coarseTimeStep() 10 0.001626 0.002222 0.0026 0.08% Gravity::get_old_grav_vector() 10 0.001514 0.002003 0.002429 0.07% Castro::finalize_do_advance() 10 0.0005041 0.001134 0.001467 0.04% AmrLevel::FillPatch() 41 0.0007332 0.001007 0.001098 0.03% Amr::timeStep() 10 0.0001488 0.0001876 0.0003787 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002726 0.0002882 0.000302 0.01% Castro::do_advance_ctu() 10 0.0001526 0.000161 0.0001772 0.01% Castro::clean_state() 62 0.0001456 0.0001584 0.00017 0.01% StateDataPhysBCFunct::() 41 0.0001059 0.0001124 0.0001317 0.00% Castro::do_old_sources() 10 8.219e-05 9.377e-05 0.0001165 0.00% FillPatchIterator::FillFromLevel0() 41 9.272e-05 0.0001033 0.0001118 0.00% FabArray::ParallelCopy() 41 8.069e-05 8.709e-05 9.253e-05 0.00% FillPatchSingleLevel 41 7.275e-05 7.792e-05 8.876e-05 0.00% Amr::FinalizeInit() 1 3.653e-06 1.412e-05 8.166e-05 0.00% Castro::Castro() 1 4.06e-05 6.28e-05 7.722e-05 0.00% Castro::construct_old_source() 50 5.226e-05 6.63e-05 7.716e-05 0.00% Castro::advance() 10 3.969e-05 5.387e-05 7.192e-05 0.00% Castro::do_new_sources() 10 5.449e-05 6.107e-05 6.581e-05 0.00% Castro::subcycle_advance_ctu() 10 4.75e-05 5.277e-05 5.992e-05 0.00% Castro::apply_source_to_state() 20 3.834e-05 5.072e-05 5.738e-05 0.00% Castro::construct_old_gravity() 10 3.396e-05 3.992e-05 4.948e-05 0.00% Amr::defBaseLevel() 1 3.402e-05 3.816e-05 4.393e-05 0.00% Castro::construct_new_gravity() 10 3.291e-05 3.618e-05 3.994e-05 0.00% Castro::expand_state() 10 2.194e-05 2.526e-05 3.027e-05 0.00% Castro::post_timestep() 10 1.481e-05 1.879e-05 2.99e-05 0.00% Castro::check_for_nan() 20 2.387e-05 2.733e-05 2.961e-05 0.00% Castro::post_init() 1 1.289e-05 1.504e-05 1.716e-05 0.00% Castro::computeNewDt() 9 8.931e-06 9.93e-06 1.178e-05 0.00% Amr::InitializeInit() 1 2.776e-06 3.602e-06 6.393e-06 0.00% Castro::computeInitialDt() 2 3.227e-06 3.814e-06 4.116e-06 0.00% Amr::init() 1 1.901e-06 2.32e-06 2.768e-06 0.00% Amr::initialInit() 1 1.368e-06 1.918e-06 2.511e-06 0.00% Other 261 0.01573 0.01821 0.02066 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.374 3.375 3.376 100.00% Amr::coarseTimeStep() 10 3.175 3.175 3.175 94.06% Amr::timeStep() 10 3.163 3.163 3.164 93.72% Castro::advance() 10 3.146 3.147 3.147 93.23% Castro::subcycle_advance_ctu() 10 3.072 3.077 3.089 91.51% Castro::do_advance_ctu() 10 3.072 3.077 3.089 91.51% Castro::construct_ctu_hydro_source() 10 2.347 2.351 2.357 69.83% Gravity::make_radial_gravity() 21 0.3097 0.3173 0.3315 9.82% Gravity::get_new_grav_vector() 11 0.2093 0.2116 0.2133 6.32% AmrLevel::FillPatch() 41 0.176 0.195 0.2059 6.10% Castro::construct_old_gravity() 10 0.1797 0.1864 0.1987 5.89% Gravity::get_old_grav_vector() 10 0.1791 0.1857 0.1981 5.87% Castro::construct_new_gravity() 10 0.1854 0.1873 0.1886 5.59% Amr::init() 1 0.1869 0.1874 0.1882 5.57% FillPatchIterator::Initialize 41 0.1492 0.1633 0.1795 5.32% Amr::initialInit() 1 0.1714 0.1725 0.1733 5.13% Castro::initialize_do_advance() 10 0.1525 0.1625 0.168 4.98% FillPatchIterator::FillFromLevel0() 41 0.1104 0.1203 0.1471 4.36% FillPatchSingleLevel 41 0.1103 0.1202 0.147 4.35% Amr::InitializeInit() 1 0.05779 0.09388 0.1439 4.26% Amr::defBaseLevel() 1 0.05779 0.09388 0.1439 4.26% check_for_negative_density() 10 0.02436 0.09212 0.1336 3.96% Castro::initData() 1 0.04133 0.07659 0.1256 3.72% Castro::clean_state() 62 0.1152 0.1172 0.1204 3.57% FabArray::ParallelCopy() 41 0.07851 0.0885 0.1183 3.50% Castro::estTimeStep() 21 0.02285 0.07764 0.1158 3.43% Castro::expand_state() 10 0.09888 0.1102 0.1156 3.42% Amr::FinalizeInit() 1 0.02841 0.0786 0.1147 3.40% Castro::do_old_sources() 10 0.08701 0.09211 0.09575 2.84% Castro::computeInitialDt() 2 0.002352 0.05257 0.08861 2.62% FabArray::ParallelCopy_finish() 41 0.03721 0.04728 0.08522 2.52% amrex::Copy() 193 0.05998 0.0775 0.08215 2.43% Castro::initialize_advance() 10 0.05381 0.06689 0.07213 2.14% FabArray::setVal() 143 0.05345 0.06455 0.07011 2.08% Castro::do_new_sources() 10 0.06109 0.06401 0.06852 2.03% Castro::computeTemp() 63 0.0639 0.06491 0.06743 2.00% Castro::normalize_species() 62 0.04567 0.04714 0.05075 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04591 0.04666 0.04886 1.45% Castro::reset_internal_energy(Fab) 1008 0.04562 0.04637 0.04857 1.44% FabArray::ParallelCopy_nowait() 41 0.03295 0.04113 0.04445 1.32% StateDataPhysBCFunct::() 41 0.02832 0.03158 0.03408 1.01% StateData::FillBoundary(geom) 41 0.02822 0.03147 0.03397 1.01% Castro::construct_new_source() 50 0.02907 0.03035 0.03201 0.95% Gravity::interpolate_monopole_grav() 21 0.02646 0.02683 0.0273 0.81% Castro::construct_new_gravity_source() 10 0.0232 0.02425 0.02585 0.77% Castro::post_init() 1 0.02521 0.02551 0.02565 0.76% Amr::writePlotFile() 2 0.02239 0.02252 0.023 0.68% Castro::finalize_do_advance() 10 0.01333 0.01758 0.02049 0.61% Castro::post_timestep() 10 0.01589 0.01622 0.01734 0.51% FabArray::setDomainBndry() 41 0.006298 0.01072 0.0138 0.41% Castro::apply_source_to_state() 20 0.01036 0.01229 0.01323 0.39% FabArray::Saxpy() 20 0.01033 0.01224 0.01317 0.39% VisMF::Write(FabArray) 2 0.008428 0.00967 0.01211 0.36% Castro::check_for_nan() 20 0.01049 0.01099 0.01197 0.35% MultiFab::contains_nan() 20 0.01046 0.01096 0.01194 0.35% Castro::Castro() 1 0.01041 0.0109 0.01183 0.35% Castro::construct_old_source() 50 0.00663 0.009201 0.009794 0.29% Castro::construct_old_gravity_source() 10 0.006577 0.009134 0.009719 0.29% Castro::computeNewDt() 9 0.008631 0.008637 0.008649 0.26% Castro::initMFs() 1 0.006505 0.007018 0.008519 0.25% Other 261 0.02568 0.02935 0.03344 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 36 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8670 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6731 KiB 6739 KiB 6743 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4547 KiB 4554 KiB 4575 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 196 KiB 218 KiB 230 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2793 KiB 2796 KiB 2797 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 234 KiB 239 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 40 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized