Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:18:37 UTC on 2025-07-08. Successfully read inputs file ... Castro git describe: 25.07-5-g5d746e0a1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07-3-g3881c8fa reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014717623 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343205919 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.3478172 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314278547 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.31258587 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.366401042 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305195127 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296183303 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296011976 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295927774 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296609373 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007619419 seconds Ending run at 05:18:40 UTC on 2025-07-08. Run time = 3.367285428 Run time without initialization = 3.187360257 Average number of zones advanced per microsecond: 0.822 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3662 ... 3.3667 ... 3.3674 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1416 2.2126 2.2835 67.81% Gravity::make_radial_gravity() 21 0.2885 0.2981 0.3162 9.39% check_for_negative_density() 10 0.02376 0.09879 0.1723 5.12% Castro::initData() 1 0.03752 0.07448 0.1162 3.45% Castro::estTimeStep() 21 0.03081 0.07017 0.1098 3.26% FabArray::ParallelCopy_finish() 41 0.03513 0.06254 0.1074 3.19% amrex::Copy() 193 0.06243 0.07761 0.08711 2.59% FabArray::setVal() 143 0.05339 0.06648 0.07704 2.29% Castro::reset_internal_energy(Fab) 1008 0.04041 0.04486 0.04833 1.44% Castro::normalize_species() 62 0.04558 0.04644 0.04829 1.43% FabArray::ParallelCopy_nowait() 41 0.03503 0.04038 0.0431 1.28% FillPatchIterator::Initialize 41 0.02749 0.03283 0.03812 1.13% StateData::FillBoundary(geom) 41 0.02913 0.0311 0.03437 1.02% Gravity::interpolate_monopole_grav() 21 0.02658 0.02689 0.02728 0.81% Castro::construct_new_gravity_source() 10 0.02287 0.02442 0.02641 0.78% FabArray::Saxpy() 20 0.01073 0.01377 0.01944 0.58% Castro::computeTemp() 63 0.01619 0.01779 0.01872 0.56% Castro::initialize_do_advance() 10 0.01141 0.01609 0.01748 0.52% Castro::construct_old_gravity_source() 10 0.006932 0.01166 0.0158 0.47% Castro::initialize_advance() 10 0.005274 0.01077 0.01391 0.41% Amr::writePlotFile() 2 0.007577 0.0105 0.01292 0.38% MultiFab::contains_nan() 20 0.0107 0.0116 0.01274 0.38% VisMF::Write(FabArray) 2 0.008602 0.009736 0.01232 0.37% FabArray::setDomainBndry() 41 0.007105 0.009611 0.01175 0.35% Castro::initMFs() 1 0.006547 0.00726 0.008139 0.24% Castro::construct_new_source() 50 0.00539 0.0059 0.006276 0.19% main() 1 0.00395 0.004232 0.004971 0.15% Gravity::get_new_grav_vector() 11 0.002602 0.003233 0.003801 0.11% Amr::coarseTimeStep() 10 0.0008511 0.00195 0.003232 0.10% Gravity::get_old_grav_vector() 10 0.001468 0.002037 0.002687 0.08% Castro::finalize_do_advance() 10 0.0005659 0.001286 0.001991 0.06% AmrLevel::FillPatch() 41 0.0007673 0.001113 0.00126 0.04% Amr::timeStep() 10 0.0001394 0.0001915 0.0004728 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000267 0.0002808 0.0002945 0.01% Castro::clean_state() 62 0.0001413 0.0001628 0.0002083 0.01% Castro::do_advance_ctu() 10 0.0001527 0.0001681 0.0001924 0.01% Amr::defBaseLevel() 1 3.841e-05 5.737e-05 0.0001482 0.00% Castro::do_old_sources() 10 8.026e-05 0.0001017 0.0001419 0.00% StateDataPhysBCFunct::() 41 9.531e-05 0.0001171 0.0001413 0.00% Castro::construct_old_source() 50 4.857e-05 8.139e-05 0.0001271 0.00% FillPatchIterator::FillFromLevel0() 41 9.47e-05 0.0001028 0.0001148 0.00% FabArray::ParallelCopy() 41 8.302e-05 9.045e-05 0.0001015 0.00% FillPatchSingleLevel 41 7.395e-05 8.61e-05 9.868e-05 0.00% Amr::FinalizeInit() 1 3.412e-06 1.605e-05 9.831e-05 0.00% Castro::apply_source_to_state() 20 3.966e-05 5.814e-05 9.211e-05 0.00% Castro::do_new_sources() 10 5.709e-05 6.394e-05 7.744e-05 0.00% Castro::Castro() 1 4.62e-05 5.502e-05 6.811e-05 0.00% Castro::construct_old_gravity() 10 3.604e-05 4.495e-05 5.916e-05 0.00% Castro::subcycle_advance_ctu() 10 4.222e-05 4.725e-05 5.481e-05 0.00% Castro::advance() 10 4.199e-05 4.543e-05 4.883e-05 0.00% Castro::construct_new_gravity() 10 2.94e-05 3.651e-05 4.18e-05 0.00% Castro::expand_state() 10 2.044e-05 2.586e-05 3.547e-05 0.00% Castro::check_for_nan() 20 2.514e-05 2.68e-05 2.997e-05 0.00% Castro::post_timestep() 10 1.383e-05 1.599e-05 2.03e-05 0.00% Castro::post_init() 1 1.387e-05 1.567e-05 1.823e-05 0.00% Castro::computeInitialDt() 2 3.29e-06 5.243e-06 1.088e-05 0.00% Castro::computeNewDt() 9 8.79e-06 9.735e-06 1.057e-05 0.00% Amr::InitializeInit() 1 2.715e-06 3.482e-06 6.17e-06 0.00% Amr::init() 1 1.882e-06 2.244e-06 3.083e-06 0.00% Amr::initialInit() 1 1.363e-06 1.685e-06 1.997e-06 0.00% Other 261 0.01598 0.01854 0.02104 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.366 3.367 3.367 100.00% Amr::coarseTimeStep() 10 3.175 3.175 3.175 94.28% Amr::timeStep() 10 3.162 3.163 3.164 93.97% Castro::advance() 10 3.147 3.147 3.148 93.49% Castro::subcycle_advance_ctu() 10 3.072 3.076 3.092 91.81% Castro::do_advance_ctu() 10 3.072 3.076 3.091 91.81% Castro::construct_ctu_hydro_source() 10 2.329 2.332 2.336 69.37% Gravity::make_radial_gravity() 21 0.3041 0.3136 0.3291 9.77% AmrLevel::FillPatch() 41 0.193 0.2092 0.232 6.89% Gravity::get_new_grav_vector() 11 0.2075 0.2092 0.2102 6.24% FillPatchIterator::Initialize 41 0.161 0.177 0.2077 6.17% Castro::construct_old_gravity() 10 0.1791 0.1849 0.1977 5.87% Gravity::get_old_grav_vector() 10 0.1783 0.1843 0.1972 5.85% Castro::construct_new_gravity() 10 0.1855 0.1868 0.1882 5.59% Amr::init() 1 0.1792 0.1796 0.1804 5.36% FillPatchIterator::FillFromLevel0() 41 0.1123 0.1345 0.1731 5.14% FillPatchSingleLevel 41 0.1122 0.1344 0.173 5.14% check_for_negative_density() 10 0.02376 0.09879 0.1723 5.12% Castro::initialize_do_advance() 10 0.1562 0.1619 0.1656 4.92% Amr::initialInit() 1 0.164 0.1646 0.1654 4.91% FabArray::ParallelCopy() 41 0.07764 0.1031 0.1427 4.24% Amr::InitializeInit() 1 0.05758 0.09568 0.1382 4.10% Amr::defBaseLevel() 1 0.05758 0.09567 0.1382 4.10% Castro::initData() 1 0.04142 0.07827 0.1199 3.56% Castro::expand_state() 10 0.101 0.1091 0.1195 3.55% Castro::clean_state() 62 0.1084 0.1147 0.1189 3.53% Castro::do_old_sources() 10 0.1093 0.1134 0.1166 3.46% Castro::estTimeStep() 21 0.03081 0.07017 0.1098 3.26% FabArray::ParallelCopy_finish() 41 0.03513 0.06254 0.1074 3.19% Amr::FinalizeInit() 1 0.02583 0.06891 0.1069 3.17% amrex::Copy() 193 0.06243 0.07761 0.08711 2.59% Castro::computeInitialDt() 2 0.002078 0.04475 0.08278 2.46% FabArray::setVal() 143 0.05339 0.06648 0.07704 2.29% Castro::initialize_advance() 10 0.05193 0.06795 0.07301 2.17% Castro::do_new_sources() 10 0.05911 0.0627 0.06813 2.02% Castro::computeTemp() 63 0.05715 0.06293 0.06733 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04068 0.04515 0.04861 1.44% Castro::reset_internal_energy(Fab) 1008 0.04041 0.04486 0.04833 1.44% Castro::normalize_species() 62 0.04558 0.04644 0.04829 1.43% FabArray::ParallelCopy_nowait() 41 0.03517 0.04048 0.04321 1.28% StateDataPhysBCFunct::() 41 0.02927 0.03121 0.03449 1.02% StateData::FillBoundary(geom) 41 0.02913 0.0311 0.03437 1.02% Castro::construct_new_source() 50 0.02886 0.03032 0.03263 0.97% Gravity::interpolate_monopole_grav() 21 0.02658 0.02689 0.02728 0.81% Castro::construct_new_gravity_source() 10 0.02287 0.02442 0.02641 0.78% Castro::post_init() 1 0.02351 0.02367 0.02375 0.71% Amr::writePlotFile() 2 0.02256 0.02276 0.02316 0.69% Castro::finalize_do_advance() 10 0.01374 0.01818 0.02265 0.67% Castro::apply_source_to_state() 20 0.01077 0.01383 0.01953 0.58% FabArray::Saxpy() 20 0.01073 0.01377 0.01944 0.58% Castro::post_timestep() 10 0.01495 0.01565 0.01633 0.48% Castro::construct_old_source() 50 0.006981 0.01174 0.01589 0.47% Castro::construct_old_gravity_source() 10 0.006932 0.01166 0.0158 0.47% Castro::check_for_nan() 20 0.01073 0.01163 0.01277 0.38% MultiFab::contains_nan() 20 0.0107 0.0116 0.01274 0.38% VisMF::Write(FabArray) 2 0.008602 0.009736 0.01232 0.37% Castro::Castro() 1 0.009872 0.01096 0.01204 0.36% FabArray::setDomainBndry() 41 0.007105 0.009611 0.01175 0.35% Castro::computeNewDt() 9 0.00853 0.008542 0.008557 0.25% Castro::initMFs() 1 0.006547 0.00726 0.008139 0.24% Other 261 0.02591 0.02972 0.03358 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 38 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6749 KiB 6754 KiB 6758 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7140 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4556 KiB 4564 KiB 4588 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 214 KiB 231 KiB 256 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2800 KiB 2803 KiB 2804 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 237 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 45 KiB 63 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized