Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:40 UTC on 2025-07-09. Successfully read inputs file ... Castro git describe: 25.07-5-g5d746e0a1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07-3-g3881c8fa reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01457192 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.341402782 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.33545368 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313690478 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314047367 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363366821 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308167954 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300353937 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299202018 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297925964 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299621671 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007476074 seconds Ending run at 05:17:43 UTC on 2025-07-09. Run time = 3.350811157 Run time without initialization = 3.185964526 Average number of zones advanced per microsecond: 0.823 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3497 ... 3.3503 ... 3.3508 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1723 2.2351 2.2946 68.48% Gravity::make_radial_gravity() 21 0.2952 0.3026 0.3206 9.57% check_for_negative_density() 10 0.02066 0.08393 0.1493 4.46% Castro::initData() 1 0.03743 0.07143 0.1016 3.03% Castro::estTimeStep() 21 0.02323 0.05868 0.09747 2.91% FabArray::ParallelCopy_finish() 41 0.03736 0.04813 0.08988 2.68% amrex::Copy() 193 0.06285 0.07854 0.08669 2.59% FabArray::setVal() 143 0.05369 0.06676 0.07283 2.17% Castro::reset_internal_energy(Fab) 1008 0.04375 0.04647 0.04841 1.44% Castro::normalize_species() 62 0.04494 0.04581 0.04743 1.42% FabArray::ParallelCopy_nowait() 41 0.03559 0.04131 0.0433 1.29% FillPatchIterator::Initialize 41 0.02737 0.03225 0.03465 1.03% StateData::FillBoundary(geom) 41 0.02799 0.03113 0.03331 0.99% Gravity::interpolate_monopole_grav() 21 0.02669 0.02699 0.02748 0.82% Castro::construct_new_gravity_source() 10 0.02309 0.02448 0.02638 0.79% Castro::computeTemp() 63 0.01758 0.01833 0.01892 0.56% Castro::initialize_do_advance() 10 0.01161 0.01656 0.01777 0.53% Castro::initialize_advance() 10 0.005395 0.01069 0.01405 0.42% FabArray::Saxpy() 20 0.01086 0.0126 0.0137 0.41% VisMF::Write(FabArray) 2 0.009114 0.009855 0.01311 0.39% MultiFab::contains_nan() 20 0.01066 0.01167 0.01295 0.39% FabArray::setDomainBndry() 41 0.006996 0.0102 0.01253 0.37% Castro::construct_old_gravity_source() 10 0.006889 0.009504 0.01026 0.31% Amr::writePlotFile() 2 0.007291 0.009435 0.01008 0.30% Castro::initMFs() 1 0.006659 0.006999 0.008663 0.26% Castro::enforce_min_density() 62 0.005715 0.006013 0.006309 0.19% Castro::construct_new_source() 50 0.005437 0.005985 0.006289 0.19% main() 1 0.00386 0.004387 0.004791 0.14% Gravity::get_new_grav_vector() 11 0.002904 0.003497 0.003777 0.11% Gravity::get_old_grav_vector() 10 0.001519 0.002079 0.002679 0.08% Amr::coarseTimeStep() 10 0.0008655 0.001731 0.002397 0.07% AmrLevel::FillPatch() 41 0.0007412 0.00123 0.00139 0.04% Castro::finalize_do_advance() 10 0.0005199 0.001145 0.001305 0.04% Amr::timeStep() 10 0.0001412 0.0001803 0.0003734 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002628 0.0002793 0.0002953 0.01% Castro::do_advance_ctu() 10 0.0001352 0.0001645 0.0001813 0.01% Castro::clean_state() 62 0.0001447 0.0001628 0.000179 0.01% StateDataPhysBCFunct::() 41 9.682e-05 0.0001125 0.0001346 0.00% FillPatchIterator::FillFromLevel0() 41 9.799e-05 0.0001038 0.000113 0.00% Castro::do_old_sources() 10 7.089e-05 9.033e-05 0.0001094 0.00% Castro::Castro() 1 4.97e-05 7.568e-05 9.776e-05 0.00% FillPatchSingleLevel 41 7.197e-05 7.83e-05 9.652e-05 0.00% FabArray::ParallelCopy() 41 7.153e-05 8.388e-05 9.261e-05 0.00% Amr::FinalizeInit() 1 3.671e-06 1.546e-05 8.907e-05 0.00% Castro::construct_old_source() 50 4.575e-05 6.73e-05 8.83e-05 0.00% Castro::do_new_sources() 10 5.235e-05 6.102e-05 7.309e-05 0.00% Castro::apply_source_to_state() 20 3.961e-05 5.206e-05 5.91e-05 0.00% Castro::subcycle_advance_ctu() 10 4.314e-05 4.818e-05 5.329e-05 0.00% Amr::defBaseLevel() 1 3.683e-05 4.542e-05 5.326e-05 0.00% Castro::advance() 10 3.76e-05 4.571e-05 5.187e-05 0.00% Castro::construct_old_gravity() 10 3.316e-05 3.833e-05 4.641e-05 0.00% Castro::construct_new_gravity() 10 3.143e-05 3.556e-05 4.051e-05 0.00% Castro::check_for_nan() 20 2.194e-05 2.538e-05 2.81e-05 0.00% Castro::expand_state() 10 2.284e-05 2.507e-05 2.776e-05 0.00% Castro::post_timestep() 10 1.462e-05 1.624e-05 1.941e-05 0.00% Castro::post_init() 1 1.47e-05 1.599e-05 1.807e-05 0.00% Castro::computeNewDt() 9 8.715e-06 1.015e-05 1.233e-05 0.00% Amr::InitializeInit() 1 2.564e-06 3.904e-06 6.88e-06 0.00% Castro::computeInitialDt() 2 3.305e-06 3.994e-06 5.71e-06 0.00% Amr::init() 1 2.016e-06 2.74e-06 5.38e-06 0.00% Amr::initialInit() 1 1.517e-06 2.037e-06 2.656e-06 0.00% Other 199 0.009298 0.01301 0.01462 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.35 3.35 3.351 100.00% Amr::coarseTimeStep() 10 3.174 3.174 3.174 94.72% Amr::timeStep() 10 3.161 3.162 3.163 94.39% Castro::advance() 10 3.145 3.146 3.146 93.89% Castro::subcycle_advance_ctu() 10 3.069 3.074 3.09 92.23% Castro::do_advance_ctu() 10 3.069 3.074 3.09 92.23% Castro::construct_ctu_hydro_source() 10 2.337 2.34 2.343 69.92% Gravity::make_radial_gravity() 21 0.3115 0.319 0.3336 9.95% Gravity::get_new_grav_vector() 11 0.2116 0.2125 0.2136 6.37% AmrLevel::FillPatch() 41 0.1827 0.1958 0.2125 6.34% Castro::construct_old_gravity() 10 0.1828 0.1872 0.2 5.97% Gravity::get_old_grav_vector() 10 0.182 0.1866 0.1994 5.95% Castro::construct_new_gravity() 10 0.1897 0.1901 0.1907 5.69% FillPatchIterator::Initialize 41 0.1504 0.1635 0.1883 5.62% Castro::initialize_do_advance() 10 0.1593 0.1649 0.1689 5.04% Amr::init() 1 0.1633 0.1644 0.1646 4.91% FillPatchIterator::FillFromLevel0() 41 0.1108 0.1211 0.1539 4.59% FillPatchSingleLevel 41 0.1107 0.121 0.1538 4.59% Amr::initialInit() 1 0.1485 0.15 0.1504 4.49% check_for_negative_density() 10 0.02066 0.08393 0.1493 4.46% FabArray::ParallelCopy() 41 0.07888 0.08963 0.1257 3.75% Amr::InitializeInit() 1 0.05867 0.09352 0.1239 3.70% Amr::defBaseLevel() 1 0.05867 0.09351 0.1239 3.70% Castro::expand_state() 10 0.1039 0.1109 0.1212 3.62% Castro::clean_state() 62 0.1119 0.1162 0.1205 3.60% Castro::initData() 1 0.04123 0.07537 0.1054 3.15% Castro::estTimeStep() 21 0.02323 0.05868 0.09747 2.91% Castro::do_old_sources() 10 0.08986 0.0928 0.09671 2.89% Amr::FinalizeInit() 1 0.02646 0.05653 0.09131 2.72% FabArray::ParallelCopy_finish() 41 0.03736 0.04813 0.08988 2.68% amrex::Copy() 193 0.06285 0.07854 0.08669 2.59% Castro::initialize_advance() 10 0.05153 0.06839 0.07385 2.20% FabArray::setVal() 143 0.05369 0.06676 0.07283 2.17% Castro::do_new_sources() 10 0.0607 0.06442 0.07026 2.10% Castro::computeTemp() 63 0.06159 0.06507 0.06763 2.02% Castro::computeInitialDt() 2 0.002136 0.03233 0.06707 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04401 0.04674 0.04871 1.45% Castro::reset_internal_energy(Fab) 1008 0.04375 0.04647 0.04841 1.44% Castro::normalize_species() 62 0.04494 0.04581 0.04743 1.42% FabArray::ParallelCopy_nowait() 41 0.03571 0.04141 0.04339 1.29% StateDataPhysBCFunct::() 41 0.0281 0.03125 0.03341 1.00% StateData::FillBoundary(geom) 41 0.02799 0.03113 0.03331 0.99% Castro::construct_new_source() 50 0.02906 0.03046 0.03267 0.98% Gravity::interpolate_monopole_grav() 21 0.02669 0.02699 0.02748 0.82% Castro::construct_new_gravity_source() 10 0.02309 0.02448 0.02638 0.79% Castro::post_init() 1 0.02314 0.02367 0.02383 0.71% Castro::finalize_do_advance() 10 0.01277 0.01858 0.02272 0.68% Amr::writePlotFile() 2 0.02178 0.0219 0.0223 0.67% Castro::post_timestep() 10 0.01529 0.01589 0.01657 0.49% Castro::apply_source_to_state() 20 0.0109 0.01265 0.01376 0.41% FabArray::Saxpy() 20 0.01086 0.0126 0.0137 0.41% VisMF::Write(FabArray) 2 0.009114 0.009855 0.01311 0.39% Castro::check_for_nan() 20 0.01068 0.0117 0.01297 0.39% MultiFab::contains_nan() 20 0.01066 0.01167 0.01295 0.39% FabArray::setDomainBndry() 41 0.006996 0.0102 0.01253 0.37% Castro::Castro() 1 0.01085 0.01131 0.01211 0.36% Castro::construct_old_source() 50 0.006935 0.009571 0.01033 0.31% Castro::construct_old_gravity_source() 10 0.006889 0.009504 0.01026 0.31% Castro::computeNewDt() 9 0.008922 0.008933 0.008945 0.27% Castro::initMFs() 1 0.006659 0.006999 0.008663 0.26% Castro::enforce_min_density() 62 0.005715 0.006013 0.006309 0.19% Other 199 0.01953 0.02471 0.02731 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 44 B 51 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6782 KiB 6784 KiB 6786 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7138 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4575 KiB 4583 KiB 4605 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 221 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2813 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 237 KiB 242 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized