Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:35 UTC on 2025-07-10. Successfully read inputs file ... Castro git describe: 25.07-5-g5d746e0a1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07-4-gb490299c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01447226 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.347983871 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.318467722 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.33031824 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.308437474 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.35264411 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303314599 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.29308 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297629787 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295511463 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.29560419 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007935954 seconds Ending run at 05:17:38 UTC on 2025-07-10. Run time = 3.325353699 Run time without initialization = 3.156169853 Average number of zones advanced per microsecond: 0.831 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3244 ... 3.3249 ... 3.3254 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1755 2.2211 2.2804 68.58% Gravity::make_radial_gravity() 21 0.2878 0.2951 0.3097 9.31% check_for_negative_density() 10 0.02269 0.08342 0.1292 3.89% Castro::initData() 1 0.03735 0.07168 0.1063 3.20% Castro::estTimeStep() 21 0.02366 0.06251 0.1018 3.06% amrex::Copy() 193 0.06417 0.0784 0.08559 2.57% FabArray::ParallelCopy_finish() 41 0.03716 0.04609 0.08526 2.56% FabArray::setVal() 143 0.05155 0.06555 0.07085 2.13% Castro::reset_internal_energy(Fab) 1008 0.04178 0.04472 0.0476 1.43% Castro::normalize_species() 62 0.0453 0.04611 0.04708 1.42% FabArray::ParallelCopy_nowait() 41 0.03545 0.04096 0.04283 1.29% FillPatchIterator::Initialize 41 0.02818 0.03223 0.03447 1.04% StateData::FillBoundary(geom) 41 0.02832 0.03095 0.03277 0.99% Gravity::interpolate_monopole_grav() 21 0.0263 0.02662 0.02678 0.81% Castro::construct_new_gravity_source() 10 0.02311 0.02452 0.02654 0.80% Castro::computeTemp() 63 0.01683 0.01767 0.01829 0.55% Castro::initialize_do_advance() 10 0.01144 0.01584 0.01727 0.52% FabArray::Saxpy() 20 0.0107 0.0126 0.01355 0.41% Castro::initialize_advance() 10 0.005311 0.0106 0.0133 0.40% VisMF::Write(FabArray) 2 0.00928 0.009832 0.01302 0.39% FabArray::setDomainBndry() 41 0.008232 0.01015 0.01266 0.38% MultiFab::contains_nan() 20 0.01019 0.01115 0.01241 0.37% Amr::writePlotFile() 2 0.00779 0.009831 0.01035 0.31% Castro::construct_old_gravity_source() 10 0.006942 0.009533 0.009993 0.30% Castro::initMFs() 1 0.006521 0.006837 0.008668 0.26% Castro::construct_new_source() 50 0.005591 0.005995 0.006197 0.19% main() 1 0.003784 0.004125 0.00445 0.13% Gravity::get_new_grav_vector() 11 0.002941 0.003385 0.003706 0.11% Amr::coarseTimeStep() 10 0.001262 0.002233 0.003128 0.09% Gravity::get_old_grav_vector() 10 0.001732 0.002077 0.002522 0.08% Castro::finalize_do_advance() 10 0.0005666 0.001133 0.00131 0.04% AmrLevel::FillPatch() 41 0.0007784 0.001164 0.001258 0.04% Amr::timeStep() 10 0.0001361 0.0001777 0.0004206 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002733 0.00029 0.0003201 0.01% Castro::do_advance_ctu() 10 0.0001425 0.0001601 0.0001903 0.01% Castro::clean_state() 62 0.0001373 0.0001551 0.0001655 0.00% StateDataPhysBCFunct::() 41 0.0001025 0.0001145 0.0001358 0.00% FillPatchIterator::FillFromLevel0() 41 9.056e-05 9.966e-05 0.000117 0.00% FabArray::ParallelCopy() 41 7.49e-05 8.817e-05 0.0001039 0.00% Castro::do_old_sources() 10 8.015e-05 9.125e-05 9.643e-05 0.00% FillPatchSingleLevel 41 6.828e-05 7.607e-05 8.322e-05 0.00% Castro::do_new_sources() 10 5.774e-05 6.63e-05 7.961e-05 0.00% Amr::defBaseLevel() 1 3.575e-05 5.517e-05 7.874e-05 0.00% Castro::Castro() 1 4.595e-05 6.363e-05 7.783e-05 0.00% Castro::construct_old_source() 50 5.562e-05 6.777e-05 7.7e-05 0.00% Castro::construct_old_gravity() 10 3.395e-05 4.171e-05 6.663e-05 0.00% Castro::apply_source_to_state() 20 4.326e-05 5.303e-05 6.325e-05 0.00% Amr::FinalizeInit() 1 3.45e-06 1.25e-05 6.324e-05 0.00% Castro::subcycle_advance_ctu() 10 3.937e-05 5.05e-05 5.866e-05 0.00% Castro::advance() 10 3.996e-05 4.612e-05 5.363e-05 0.00% Castro::construct_new_gravity() 10 3.238e-05 3.705e-05 4.589e-05 0.00% Castro::expand_state() 10 2.307e-05 2.83e-05 3.652e-05 0.00% Castro::check_for_nan() 20 2.465e-05 2.671e-05 2.892e-05 0.00% Castro::post_timestep() 10 1.389e-05 1.6e-05 1.846e-05 0.00% Castro::post_init() 1 1.418e-05 1.576e-05 1.783e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.474e-06 1.064e-05 1.237e-05 0.00% Castro::computeNewDt() 9 8.307e-06 9.253e-06 1.078e-05 0.00% Amr::InitializeInit() 1 2.429e-06 3.601e-06 6.991e-06 0.00% Castro::computeInitialDt() 2 3.127e-06 3.761e-06 4.418e-06 0.00% Amr::init() 1 2.226e-06 2.602e-06 3.631e-06 0.00% Amr::initialInit() 1 1.468e-06 1.846e-06 2.747e-06 0.00% Other 260 0.0151 0.019 0.02125 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.324 3.325 3.325 100.00% Amr::coarseTimeStep() 10 3.144 3.144 3.144 94.54% Amr::timeStep() 10 3.131 3.132 3.133 94.21% Castro::advance() 10 3.115 3.116 3.116 93.71% Castro::subcycle_advance_ctu() 10 3.042 3.045 3.061 92.06% Castro::do_advance_ctu() 10 3.042 3.045 3.061 92.05% Castro::construct_ctu_hydro_source() 10 2.324 2.325 2.328 70.00% Gravity::make_radial_gravity() 21 0.3049 0.3113 0.323 9.71% AmrLevel::FillPatch() 41 0.183 0.1933 0.2115 6.36% Gravity::get_new_grav_vector() 11 0.2065 0.2077 0.2086 6.27% Castro::construct_old_gravity() 10 0.1784 0.1831 0.1932 5.81% Gravity::get_old_grav_vector() 10 0.1777 0.1824 0.1926 5.79% FillPatchIterator::Initialize 41 0.1514 0.1609 0.1862 5.60% Castro::construct_new_gravity() 10 0.1843 0.1852 0.186 5.59% Amr::init() 1 0.1676 0.1686 0.1688 5.08% Castro::initialize_do_advance() 10 0.1575 0.1621 0.1679 5.05% Amr::initialInit() 1 0.153 0.1544 0.1547 4.65% FillPatchIterator::FillFromLevel0() 41 0.1107 0.1185 0.1495 4.50% FillPatchSingleLevel 41 0.1106 0.1184 0.1494 4.49% check_for_negative_density() 10 0.02269 0.08342 0.1292 3.89% Amr::InitializeInit() 1 0.05844 0.09335 0.1281 3.85% Amr::defBaseLevel() 1 0.05844 0.09335 0.1281 3.85% FabArray::ParallelCopy() 41 0.07956 0.08724 0.1209 3.64% Castro::expand_state() 10 0.1037 0.1098 0.1208 3.63% Castro::clean_state() 62 0.1101 0.1141 0.1189 3.58% Castro::initData() 1 0.04114 0.07548 0.1101 3.31% Castro::estTimeStep() 21 0.02366 0.06251 0.1018 3.06% Amr::FinalizeInit() 1 0.02639 0.06105 0.09622 2.89% Castro::do_old_sources() 10 0.0896 0.09187 0.09373 2.82% amrex::Copy() 193 0.06417 0.0784 0.08559 2.57% FabArray::ParallelCopy_finish() 41 0.03716 0.04609 0.08526 2.56% Castro::computeInitialDt() 2 0.002104 0.03682 0.07193 2.16% Castro::initialize_advance() 10 0.05093 0.06742 0.07123 2.14% FabArray::setVal() 143 0.05155 0.06555 0.07085 2.13% Castro::do_new_sources() 10 0.05993 0.06368 0.06911 2.08% Castro::computeTemp() 63 0.05904 0.06267 0.06618 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04205 0.04501 0.04789 1.44% Castro::reset_internal_energy(Fab) 1008 0.04178 0.04472 0.0476 1.43% Castro::normalize_species() 62 0.0453 0.04611 0.04708 1.42% FabArray::ParallelCopy_nowait() 41 0.03559 0.04106 0.04292 1.29% StateDataPhysBCFunct::() 41 0.02843 0.03107 0.03287 0.99% StateData::FillBoundary(geom) 41 0.02832 0.03095 0.03277 0.99% Castro::construct_new_source() 50 0.02902 0.03051 0.03268 0.98% Gravity::interpolate_monopole_grav() 21 0.0263 0.02662 0.02678 0.81% Castro::construct_new_gravity_source() 10 0.02311 0.02452 0.02654 0.80% Castro::post_init() 1 0.02342 0.02371 0.0238 0.72% Amr::writePlotFile() 2 0.02217 0.02228 0.02268 0.68% Castro::finalize_do_advance() 10 0.01214 0.01814 0.02245 0.68% Castro::post_timestep() 10 0.01486 0.01568 0.01638 0.49% Castro::apply_source_to_state() 20 0.01074 0.01265 0.01361 0.41% FabArray::Saxpy() 20 0.0107 0.0126 0.01355 0.41% VisMF::Write(FabArray) 2 0.00928 0.009832 0.01302 0.39% FabArray::setDomainBndry() 41 0.008232 0.01015 0.01266 0.38% Castro::check_for_nan() 20 0.01022 0.01118 0.01244 0.37% MultiFab::contains_nan() 20 0.01019 0.01115 0.01241 0.37% Castro::Castro() 1 0.01039 0.01093 0.01173 0.35% Castro::construct_old_source() 50 0.006997 0.0096 0.01007 0.30% Castro::construct_old_gravity_source() 10 0.006942 0.009533 0.009993 0.30% Castro::computeNewDt() 9 0.008669 0.008687 0.008704 0.26% Castro::initMFs() 1 0.006521 0.006837 0.008668 0.26% AmrLevel::AmrLevel(dm) 1 0.005424 0.005767 0.006442 0.19% Other 260 0.01988 0.02493 0.02773 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 44 B 71 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6771 KiB 6773 KiB 6774 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4570 KiB 4575 KiB 4596 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 208 KiB 220 KiB 242 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2808 KiB 2810 KiB 2811 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 238 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 40 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized