Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:37 UTC on 2025-07-11. Successfully read inputs file ... Castro git describe: 25.07-5-g5d746e0a1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07-4-gb490299c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015185399 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.345209133 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34521846 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.312928612 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.311793507 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363325247 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.321868686 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.3012684 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297258517 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298328491 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.29676096 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007584973 seconds Ending run at 05:17:41 UTC on 2025-07-11. Run time = 3.413608852 Run time without initialization = 3.207389831 Average number of zones advanced per microsecond: 0.817 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.4068 ... 3.4112 ... 3.4136 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1674 2.2131 2.2626 66.28% Gravity::make_radial_gravity() 21 0.3078 0.3213 0.3327 9.75% check_for_negative_density() 10 0.0389 0.09093 0.1386 4.06% Castro::initData() 1 0.03857 0.07706 0.1289 3.78% Castro::estTimeStep() 21 0.02859 0.08451 0.1277 3.74% amrex::Copy() 193 0.0689 0.0827 0.09677 2.83% FabArray::ParallelCopy_finish() 41 0.05 0.06365 0.09233 2.70% FabArray::setVal() 143 0.05693 0.06745 0.07381 2.16% Castro::normalize_species() 62 0.04505 0.04733 0.05766 1.69% Castro::reset_internal_energy(Fab) 1008 0.04274 0.04557 0.04849 1.42% FabArray::ParallelCopy_nowait() 41 0.03484 0.04005 0.04205 1.23% FillPatchIterator::Initialize 41 0.02726 0.03251 0.03562 1.04% StateData::FillBoundary(geom) 41 0.02994 0.03192 0.0341 1.00% Gravity::interpolate_monopole_grav() 21 0.02657 0.02716 0.02809 0.82% Castro::construct_new_gravity_source() 10 0.02243 0.02369 0.02504 0.73% Castro::computeTemp() 63 0.01755 0.01807 0.01887 0.55% Castro::initialize_do_advance() 10 0.01147 0.01634 0.01788 0.52% VisMF::Write(FabArray) 2 0.009284 0.01 0.01379 0.40% Castro::initialize_advance() 10 0.005294 0.01073 0.01375 0.40% FabArray::Saxpy() 20 0.01055 0.01187 0.0129 0.38% MultiFab::contains_nan() 20 0.0106 0.01141 0.01242 0.36% FabArray::setDomainBndry() 41 0.006694 0.009962 0.01233 0.36% Amr::writePlotFile() 2 0.007508 0.01047 0.01116 0.33% Castro::initMFs() 1 0.00648 0.007785 0.01063 0.31% Castro::construct_old_gravity_source() 10 0.00628 0.00871 0.01051 0.31% Gravity::get_old_grav_vector() 10 0.001647 0.002995 0.01011 0.30% StateData::define() 4 0.005449 0.00631 0.008453 0.25% Castro::construct_new_source() 50 0.005789 0.006004 0.006283 0.18% main() 1 0.003493 0.004308 0.005133 0.15% Amr::coarseTimeStep() 10 0.00167 0.003794 0.004558 0.13% Gravity::get_new_grav_vector() 11 0.002796 0.00344 0.003846 0.11% Castro::finalize_do_advance() 10 0.0005301 0.001143 0.001686 0.05% AmrLevel::FillPatch() 41 0.0007159 0.001101 0.001278 0.04% Amr::timeStep() 10 0.0001274 0.0001828 0.0004089 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000267 0.0002879 0.0003351 0.01% Castro::do_advance_ctu() 10 0.0001356 0.000163 0.000186 0.01% Castro::clean_state() 62 0.0001491 0.0001584 0.0001671 0.00% StateDataPhysBCFunct::() 41 0.0001032 0.0001217 0.0001632 0.00% FillPatchIterator::FillFromLevel0() 41 9.944e-05 0.0001066 0.0001132 0.00% Castro::do_old_sources() 10 7.566e-05 9.281e-05 0.0001089 0.00% FabArray::ParallelCopy() 41 8.134e-05 8.821e-05 9.866e-05 0.00% FillPatchSingleLevel 41 7.357e-05 7.714e-05 8.375e-05 0.00% Castro::construct_old_source() 50 4.729e-05 6.013e-05 7.448e-05 0.00% Castro::Castro() 1 3.731e-05 5.882e-05 7.251e-05 0.00% Amr::FinalizeInit() 1 3.859e-06 1.227e-05 6.625e-05 0.00% Castro::do_new_sources() 10 5.265e-05 5.762e-05 6.2e-05 0.00% Castro::apply_source_to_state() 20 4.51e-05 5.172e-05 5.745e-05 0.00% Castro::subcycle_advance_ctu() 10 4.147e-05 4.917e-05 5.73e-05 0.00% Castro::advance() 10 3.251e-05 4.588e-05 5.348e-05 0.00% Amr::defBaseLevel() 1 3.436e-05 4.326e-05 5.248e-05 0.00% Castro::construct_old_gravity() 10 3.217e-05 4.015e-05 5.142e-05 0.00% Castro::construct_new_gravity() 10 3.007e-05 3.595e-05 4.477e-05 0.00% Castro::check_for_nan() 20 2.463e-05 2.659e-05 2.834e-05 0.00% Castro::expand_state() 10 2.061e-05 2.437e-05 2.652e-05 0.00% Castro::post_timestep() 10 1.379e-05 1.735e-05 2.347e-05 0.00% AmrLevel::AmrLevel(dm) 1 6.956e-06 1.336e-05 2.334e-05 0.00% Castro::post_init() 1 1.394e-05 1.627e-05 2.054e-05 0.00% Castro::computeNewDt() 9 8.911e-06 9.621e-06 1.061e-05 0.00% Amr::InitializeInit() 1 2.572e-06 3.565e-06 5.602e-06 0.00% Castro::computeInitialDt() 2 3.158e-06 3.922e-06 5.554e-06 0.00% Amr::init() 1 2.205e-06 2.455e-06 2.973e-06 0.00% Amr::initialInit() 1 1.376e-06 1.745e-06 2.049e-06 0.00% Other 256 0.009383 0.016 0.01906 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.407 3.411 3.414 100.00% Amr::coarseTimeStep() 10 3.195 3.195 3.195 93.59% Amr::timeStep() 10 3.18 3.181 3.183 93.25% Castro::advance() 10 3.165 3.165 3.166 92.74% Castro::subcycle_advance_ctu() 10 3.089 3.093 3.106 90.99% Castro::do_advance_ctu() 10 3.089 3.093 3.106 90.99% Castro::construct_ctu_hydro_source() 10 2.32 2.325 2.329 68.24% Gravity::make_radial_gravity() 21 0.3274 0.3389 0.3456 10.12% AmrLevel::FillPatch() 41 0.1941 0.2108 0.2241 6.56% Castro::construct_old_gravity() 10 0.2087 0.2153 0.2239 6.56% Gravity::get_old_grav_vector() 10 0.208 0.2147 0.2233 6.54% Gravity::get_new_grav_vector() 11 0.2066 0.2099 0.2116 6.20% Amr::init() 1 0.2006 0.2042 0.2059 6.03% FillPatchIterator::Initialize 41 0.1619 0.1786 0.1952 5.72% Amr::initialInit() 1 0.1852 0.1889 0.1904 5.58% Castro::construct_new_gravity() 10 0.1815 0.1847 0.186 5.45% Castro::initialize_do_advance() 10 0.1568 0.1642 0.1712 5.02% FillPatchIterator::FillFromLevel0() 41 0.1235 0.1361 0.1612 4.72% FillPatchSingleLevel 41 0.1234 0.136 0.1611 4.72% Amr::InitializeInit() 1 0.06367 0.1025 0.1559 4.57% Amr::defBaseLevel() 1 0.06367 0.1025 0.1559 4.57% check_for_negative_density() 10 0.0389 0.09093 0.1386 4.06% Castro::initData() 1 0.04222 0.08092 0.1331 3.90% Castro::clean_state() 62 0.1125 0.1164 0.1282 3.76% Castro::estTimeStep() 21 0.02859 0.08451 0.1277 3.74% FabArray::ParallelCopy() 41 0.09164 0.1039 0.1274 3.73% Amr::FinalizeInit() 1 0.02962 0.08642 0.1267 3.71% Castro::expand_state() 10 0.102 0.1107 0.1215 3.56% Castro::do_old_sources() 10 0.09512 0.1046 0.1165 3.41% Castro::computeInitialDt() 2 0.002301 0.05938 0.09969 2.92% amrex::Copy() 193 0.0689 0.0827 0.09677 2.83% FabArray::ParallelCopy_finish() 41 0.05 0.06365 0.09233 2.70% FabArray::setVal() 143 0.05693 0.06745 0.07381 2.16% Castro::initialize_advance() 10 0.05519 0.06911 0.07342 2.15% Castro::computeTemp() 63 0.06061 0.06393 0.06732 1.97% Castro::do_new_sources() 10 0.05982 0.06236 0.06685 1.96% Castro::normalize_species() 62 0.04505 0.04733 0.05766 1.69% Castro::reset_internal_energy(MultiFab) 63 0.04303 0.04586 0.04879 1.43% Castro::reset_internal_energy(Fab) 1008 0.04274 0.04557 0.04849 1.42% FabArray::ParallelCopy_nowait() 41 0.03496 0.04015 0.04214 1.23% StateDataPhysBCFunct::() 41 0.03007 0.03204 0.03422 1.00% StateData::FillBoundary(geom) 41 0.02994 0.03192 0.0341 1.00% Castro::construct_new_source() 50 0.02841 0.02969 0.03129 0.92% Gravity::interpolate_monopole_grav() 21 0.02657 0.02716 0.02809 0.82% Castro::post_init() 1 0.02629 0.02643 0.0267 0.78% Castro::construct_new_gravity_source() 10 0.02243 0.02369 0.02504 0.73% Amr::writePlotFile() 2 0.02269 0.02297 0.02314 0.68% Castro::finalize_do_advance() 10 0.01262 0.01753 0.02096 0.61% Castro::post_timestep() 10 0.01501 0.01587 0.01831 0.54% Castro::Castro() 1 0.009906 0.01152 0.01469 0.43% VisMF::Write(FabArray) 2 0.009284 0.01 0.01379 0.40% Castro::apply_source_to_state() 20 0.01061 0.01192 0.01296 0.38% FabArray::Saxpy() 20 0.01055 0.01187 0.0129 0.38% Castro::check_for_nan() 20 0.01063 0.01144 0.01245 0.36% MultiFab::contains_nan() 20 0.0106 0.01141 0.01242 0.36% FabArray::setDomainBndry() 41 0.006694 0.009962 0.01233 0.36% Castro::initMFs() 1 0.00648 0.007785 0.01063 0.31% Castro::construct_old_source() 50 0.006327 0.00877 0.01059 0.31% Castro::construct_old_gravity_source() 10 0.00628 0.00871 0.01051 0.31% Castro::computeNewDt() 9 0.008744 0.008758 0.008775 0.26% AmrLevel::AmrLevel(dm) 1 0.005456 0.006323 0.008475 0.25% StateData::define() 4 0.005449 0.00631 0.008453 0.25% Other 256 0.01407 0.02458 0.02971 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 41 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8648 KiB 8658 KiB 8661 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6700 KiB 6707 KiB 6715 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7121 KiB 7132 KiB 7139 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4520 KiB 4528 KiB 4541 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 228 KiB 242 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2777 KiB 2782 KiB 2785 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 244 KiB 253 KiB 258 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 44 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2024 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 78 KiB 80 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized