Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:32 UTC on 2025-07-14. Successfully read inputs file ... Castro git describe: 25.07-5-g5d746e0a1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07-5-gb321ef91 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014269171 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.335057666 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.345631135 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.31682442 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.31585962 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371415259 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.312160127 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298388912 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299976811 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299060794 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299447048 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007566065 seconds Ending run at 05:17:35 UTC on 2025-07-14. Run time = 3.388868164 Run time without initialization = 3.205969196 Average number of zones advanced per microsecond: 0.818 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3873 ... 3.3880 ... 3.3892 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1685 2.2177 2.2828 67.36% Gravity::make_radial_gravity() 21 0.2905 0.2991 0.3104 9.16% check_for_negative_density() 10 0.04894 0.1217 0.1682 4.96% Castro::initData() 1 0.03706 0.07447 0.1175 3.47% Castro::estTimeStep() 21 0.02123 0.07166 0.1154 3.40% FabArray::ParallelCopy_finish() 41 0.03931 0.05373 0.09052 2.67% amrex::Copy() 193 0.0641 0.078 0.08717 2.57% FabArray::setVal() 143 0.05442 0.06537 0.07103 2.10% FabArray::ParallelCopy_nowait() 41 0.03666 0.04224 0.05295 1.56% Castro::reset_internal_energy(Fab) 1008 0.04311 0.04581 0.04837 1.43% Castro::normalize_species() 62 0.04535 0.04628 0.04719 1.39% FillPatchIterator::Initialize 41 0.02818 0.03249 0.03497 1.03% StateData::FillBoundary(geom) 41 0.02864 0.03114 0.03304 0.97% Gravity::interpolate_monopole_grav() 21 0.02667 0.02685 0.02728 0.80% Castro::construct_new_gravity_source() 10 0.02297 0.0246 0.02725 0.80% Castro::computeTemp() 63 0.01737 0.01808 0.01903 0.56% FabArray::Saxpy() 20 0.01084 0.01392 0.01894 0.56% FabArray::setDomainBndry() 41 0.006909 0.01061 0.01763 0.52% Castro::initialize_do_advance() 10 0.01159 0.01584 0.01733 0.51% Castro::initialize_advance() 10 0.005317 0.01078 0.01366 0.40% Amr::writePlotFile() 2 0.007452 0.0101 0.01242 0.37% MultiFab::contains_nan() 20 0.01042 0.01116 0.01217 0.36% VisMF::Write(FabArray) 2 0.008392 0.009491 0.01187 0.35% Castro::construct_old_gravity_source() 10 0.006936 0.009477 0.01029 0.30% Castro::initMFs() 1 0.006595 0.007272 0.00801 0.24% Castro::enforce_min_density() 62 0.005561 0.005958 0.006454 0.19% Castro::construct_new_source() 50 0.00574 0.006044 0.006371 0.19% main() 1 0.003869 0.004004 0.004115 0.12% Gravity::get_new_grav_vector() 11 0.002935 0.003436 0.003818 0.11% Amr::coarseTimeStep() 10 0.001143 0.002034 0.002978 0.09% Gravity::get_old_grav_vector() 10 0.001646 0.002023 0.002374 0.07% Castro::finalize_do_advance() 10 0.0005326 0.001105 0.001452 0.04% AmrLevel::FillPatch() 41 0.000735 0.0008957 0.001061 0.03% Amr::timeStep() 10 0.0001312 0.0001959 0.0004188 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002735 0.0002902 0.000312 0.01% Castro::clean_state() 62 0.0001353 0.0001619 0.0001907 0.01% Castro::do_advance_ctu() 10 0.0001399 0.0001591 0.0001853 0.01% StateDataPhysBCFunct::() 41 9.239e-05 0.0001118 0.0001347 0.00% FillPatchIterator::FillFromLevel0() 41 9.805e-05 0.0001048 0.000122 0.00% Castro::do_old_sources() 10 8.35e-05 9.289e-05 0.0001042 0.00% FabArray::ParallelCopy() 41 7.87e-05 8.69e-05 9.876e-05 0.00% Castro::apply_source_to_state() 20 3.965e-05 5.984e-05 8.98e-05 0.00% FillPatchSingleLevel 41 7.359e-05 7.948e-05 8.901e-05 0.00% Castro::do_new_sources() 10 5.727e-05 6.452e-05 8.158e-05 0.00% Castro::construct_old_source() 50 5.295e-05 6.66e-05 7.686e-05 0.00% Amr::FinalizeInit() 1 3.527e-06 1.305e-05 7.329e-05 0.00% Castro::Castro() 1 4.232e-05 5.412e-05 6.768e-05 0.00% Castro::subcycle_advance_ctu() 10 4.226e-05 5.015e-05 6.397e-05 0.00% Castro::advance() 10 4.174e-05 4.909e-05 6.166e-05 0.00% Castro::expand_state() 10 2.17e-05 2.676e-05 4.44e-05 0.00% Castro::construct_old_gravity() 10 3.529e-05 3.908e-05 4.298e-05 0.00% Castro::construct_new_gravity() 10 2.805e-05 3.664e-05 4.283e-05 0.00% Amr::defBaseLevel() 1 3.729e-05 3.999e-05 4.162e-05 0.00% Castro::check_for_nan() 20 2.448e-05 2.577e-05 2.837e-05 0.00% Castro::post_timestep() 10 1.513e-05 1.787e-05 2.23e-05 0.00% Castro::post_init() 1 1.354e-05 1.494e-05 1.784e-05 0.00% Castro::computeNewDt() 9 9.024e-06 1.059e-05 1.615e-05 0.00% Amr::InitializeInit() 1 2.819e-06 3.513e-06 5.941e-06 0.00% Castro::computeInitialDt() 2 2.764e-06 3.422e-06 4.295e-06 0.00% Amr::init() 1 1.707e-06 2.378e-06 3.26e-06 0.00% Amr::initialInit() 1 1.461e-06 1.963e-06 2.646e-06 0.00% Other 199 0.0103 0.01271 0.01473 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.387 3.388 3.389 100.00% Amr::coarseTimeStep() 10 3.194 3.194 3.194 94.25% Amr::timeStep() 10 3.182 3.183 3.184 93.94% Castro::advance() 10 3.166 3.167 3.167 93.45% Castro::subcycle_advance_ctu() 10 3.09 3.095 3.109 91.73% Castro::do_advance_ctu() 10 3.09 3.095 3.109 91.73% Castro::construct_ctu_hydro_source() 10 2.354 2.361 2.366 69.80% Gravity::make_radial_gravity() 21 0.3069 0.3152 0.3233 9.54% AmrLevel::FillPatch() 41 0.1869 0.2023 0.219 6.46% Gravity::get_new_grav_vector() 11 0.2068 0.2084 0.2095 6.18% Castro::construct_old_gravity() 10 0.1825 0.1882 0.1959 5.78% Gravity::get_old_grav_vector() 10 0.1817 0.1876 0.1952 5.76% FillPatchIterator::Initialize 41 0.1561 0.1707 0.1937 5.71% Castro::construct_new_gravity() 10 0.1849 0.1854 0.186 5.49% Amr::init() 1 0.1812 0.1817 0.1826 5.39% Castro::initialize_do_advance() 10 0.1545 0.1616 0.1686 4.97% Amr::initialInit() 1 0.1665 0.1672 0.1682 4.96% check_for_negative_density() 10 0.04894 0.1217 0.1682 4.96% FillPatchIterator::FillFromLevel0() 41 0.1183 0.1276 0.1586 4.68% FillPatchSingleLevel 41 0.1182 0.1275 0.1585 4.68% Amr::InitializeInit() 1 0.05646 0.09581 0.14 4.13% Amr::defBaseLevel() 1 0.05646 0.0958 0.14 4.13% FabArray::ParallelCopy() 41 0.08553 0.09616 0.1274 3.76% Castro::initData() 1 0.04056 0.07818 0.1217 3.59% Castro::expand_state() 10 0.101 0.1094 0.1207 3.56% Castro::clean_state() 62 0.1115 0.1158 0.12 3.54% Castro::estTimeStep() 21 0.02123 0.07166 0.1154 3.40% Amr::FinalizeInit() 1 0.02704 0.0714 0.1107 3.27% Castro::do_old_sources() 10 0.09525 0.1014 0.1072 3.16% FabArray::ParallelCopy_finish() 41 0.03931 0.05373 0.09052 2.67% amrex::Copy() 193 0.0641 0.078 0.08717 2.57% Castro::computeInitialDt() 2 0.00218 0.04666 0.08587 2.53% Castro::initialize_advance() 10 0.05388 0.06847 0.07377 2.18% FabArray::setVal() 143 0.05442 0.06537 0.07103 2.10% Castro::do_new_sources() 10 0.0602 0.06373 0.06969 2.06% Castro::computeTemp() 63 0.06075 0.06419 0.06771 2.00% FabArray::ParallelCopy_nowait() 41 0.03679 0.04234 0.05304 1.56% Castro::reset_internal_energy(MultiFab) 63 0.04338 0.04611 0.04868 1.44% Castro::reset_internal_energy(Fab) 1008 0.04311 0.04581 0.04837 1.43% Castro::normalize_species() 62 0.04535 0.04628 0.04719 1.39% Castro::construct_new_source() 50 0.02887 0.03064 0.03362 0.99% StateDataPhysBCFunct::() 41 0.02876 0.03125 0.03314 0.98% StateData::FillBoundary(geom) 41 0.02864 0.03114 0.03304 0.97% Gravity::interpolate_monopole_grav() 21 0.02667 0.02685 0.02728 0.80% Castro::construct_new_gravity_source() 10 0.02297 0.0246 0.02725 0.80% Castro::post_init() 1 0.02401 0.02428 0.02442 0.72% Amr::writePlotFile() 2 0.02207 0.0222 0.02259 0.67% Castro::finalize_do_advance() 10 0.01185 0.01768 0.02224 0.66% Castro::apply_source_to_state() 20 0.01088 0.01398 0.01903 0.56% FabArray::Saxpy() 20 0.01084 0.01392 0.01894 0.56% FabArray::setDomainBndry() 41 0.006909 0.01061 0.01763 0.52% Castro::post_timestep() 10 0.0151 0.01585 0.01687 0.50% Castro::check_for_nan() 20 0.01044 0.01118 0.01219 0.36% MultiFab::contains_nan() 20 0.01042 0.01116 0.01217 0.36% Castro::Castro() 1 0.009857 0.01097 0.01197 0.35% VisMF::Write(FabArray) 2 0.008392 0.009491 0.01187 0.35% Castro::construct_old_source() 50 0.006989 0.009543 0.01037 0.31% Castro::construct_old_gravity_source() 10 0.006936 0.009477 0.01029 0.30% Castro::computeNewDt() 9 0.008435 0.008447 0.008458 0.25% Castro::initMFs() 1 0.006595 0.007272 0.00801 0.24% Castro::enforce_min_density() 62 0.005561 0.005958 0.006454 0.19% Other 199 0.02044 0.02424 0.02783 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 36 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8670 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6745 KiB 6753 KiB 6757 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4555 KiB 4563 KiB 4586 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 223 KiB 244 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2800 KiB 2803 KiB 2804 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 237 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 42 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 71 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized