Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:36 UTC on 2025-07-15. Successfully read inputs file ... Castro git describe: 25.07-5-g5d746e0a1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07-5-gb321ef91 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014395019 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348568518 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.315661296 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.312270553 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.30658751 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.347185993 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.309570081 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.304063143 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.300741528 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.301520914 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299160291 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00745773 seconds Ending run at 05:17:40 UTC on 2025-07-15. Run time = 3.33522408 Run time without initialization = 3.158167781 Average number of zones advanced per microsecond: 0.830 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3327 ... 3.3341 ... 3.3353 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2005 2.2263 2.2607 67.78% Gravity::make_radial_gravity() 21 0.2928 0.2965 0.3031 9.09% check_for_negative_density() 10 0.05511 0.09112 0.1173 3.52% Castro::initData() 1 0.03713 0.07176 0.1104 3.31% Castro::estTimeStep() 21 0.0297 0.06913 0.1078 3.23% amrex::Copy() 193 0.06732 0.07394 0.07966 2.39% FabArray::setVal() 143 0.05887 0.06363 0.06934 2.08% FabArray::ParallelCopy_finish() 41 0.03736 0.04547 0.06477 1.94% Castro::normalize_species() 62 0.04509 0.04794 0.05209 1.56% Castro::reset_internal_energy(Fab) 1008 0.04383 0.04564 0.04688 1.41% FabArray::ParallelCopy_nowait() 41 0.03612 0.03931 0.04119 1.24% FillPatchIterator::Initialize 41 0.02899 0.03089 0.03273 0.98% StateData::FillBoundary(geom) 41 0.02828 0.03028 0.03168 0.95% Gravity::interpolate_monopole_grav() 21 0.02642 0.02678 0.02746 0.82% Castro::construct_new_gravity_source() 10 0.02264 0.0239 0.02636 0.79% Castro::computeTemp() 63 0.01752 0.01822 0.01885 0.57% Castro::initialize_do_advance() 10 0.01283 0.01537 0.01684 0.50% FabArray::Saxpy() 20 0.01104 0.01189 0.01287 0.39% Castro::initialize_advance() 10 0.005591 0.009141 0.01265 0.38% VisMF::Write(FabArray) 2 0.008972 0.009564 0.01209 0.36% MultiFab::contains_nan() 20 0.01003 0.01087 0.01192 0.36% FabArray::setDomainBndry() 41 0.00723 0.009531 0.01181 0.35% Amr::writePlotFile() 2 0.007355 0.009938 0.01109 0.33% Castro::construct_old_gravity_source() 10 0.007413 0.00912 0.00996 0.30% Castro::initMFs() 1 0.006335 0.007067 0.008142 0.24% Castro::construct_new_source() 50 0.005742 0.00597 0.006177 0.19% main() 1 0.003924 0.00423 0.004599 0.14% Amr::coarseTimeStep() 10 0.001632 0.002724 0.003492 0.10% Gravity::get_new_grav_vector() 11 0.002977 0.00323 0.003452 0.10% Gravity::get_old_grav_vector() 10 0.001722 0.001993 0.002193 0.07% Castro::finalize_do_advance() 10 0.0006457 0.001019 0.001205 0.04% AmrLevel::FillPatch() 41 0.0008203 0.00087 0.0009283 0.03% Amr::timeStep() 10 0.0001406 0.0001881 0.0004262 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002718 0.0002915 0.0003333 0.01% Castro::clean_state() 62 0.0001342 0.0001596 0.0001853 0.01% Castro::do_advance_ctu() 10 0.000142 0.000161 0.000185 0.01% StateDataPhysBCFunct::() 41 9.573e-05 0.0001096 0.0001275 0.00% FillPatchIterator::FillFromLevel0() 41 9.542e-05 0.0001074 0.0001194 0.00% Castro::do_old_sources() 10 8.609e-05 9.59e-05 0.0001091 0.00% FabArray::ParallelCopy() 41 8.485e-05 9.211e-05 9.837e-05 0.00% Amr::FinalizeInit() 1 4.085e-06 1.483e-05 8.577e-05 0.00% FillPatchSingleLevel 41 7.141e-05 7.734e-05 8.241e-05 0.00% Castro::construct_old_source() 50 5.967e-05 6.863e-05 8.073e-05 0.00% Castro::do_new_sources() 10 5.437e-05 6.269e-05 6.874e-05 0.00% Castro::advance() 10 3.998e-05 4.752e-05 6.625e-05 0.00% Castro::Castro() 1 3.867e-05 5.203e-05 6.087e-05 0.00% Castro::apply_source_to_state() 20 4.375e-05 5.287e-05 6.001e-05 0.00% Amr::defBaseLevel() 1 3.432e-05 4.135e-05 5.869e-05 0.00% Castro::construct_new_gravity() 10 2.895e-05 3.669e-05 5.663e-05 0.00% Castro::subcycle_advance_ctu() 10 3.826e-05 4.668e-05 5.52e-05 0.00% Castro::construct_old_gravity() 10 3.286e-05 3.942e-05 4.504e-05 0.00% Castro::check_for_nan() 20 2.368e-05 2.535e-05 2.805e-05 0.00% Castro::expand_state() 10 2.13e-05 2.472e-05 2.689e-05 0.00% Castro::post_init() 1 1.265e-05 1.548e-05 1.833e-05 0.00% Castro::post_timestep() 10 1.405e-05 1.624e-05 1.761e-05 0.00% Castro::computeNewDt() 9 8.705e-06 1.041e-05 1.389e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.807e-06 1.121e-05 1.254e-05 0.00% Amr::InitializeInit() 1 2.743e-06 3.482e-06 6.003e-06 0.00% Castro::computeInitialDt() 2 3.079e-06 3.603e-06 4.977e-06 0.00% Amr::init() 1 1.708e-06 2.473e-06 3.361e-06 0.00% Amr::initialInit() 1 1.666e-06 1.908e-06 2.4e-06 0.00% Other 260 0.01547 0.01885 0.02193 0.66% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.333 3.334 3.335 100.00% Amr::coarseTimeStep() 10 3.146 3.146 3.146 94.33% Amr::timeStep() 10 3.133 3.133 3.135 93.98% Castro::advance() 10 3.117 3.117 3.117 93.47% Castro::subcycle_advance_ctu() 10 3.044 3.047 3.054 91.58% Castro::do_advance_ctu() 10 3.044 3.047 3.054 91.58% Castro::construct_ctu_hydro_source() 10 2.338 2.339 2.341 70.17% Gravity::make_radial_gravity() 21 0.3093 0.3122 0.3167 9.50% Gravity::get_new_grav_vector() 11 0.2074 0.2082 0.2096 6.28% AmrLevel::FillPatch() 41 0.1748 0.1863 0.1952 5.85% Castro::construct_old_gravity() 10 0.1778 0.1814 0.1857 5.57% Gravity::get_old_grav_vector() 10 0.1772 0.1807 0.185 5.55% Castro::construct_new_gravity() 10 0.1829 0.1836 0.1845 5.53% Amr::init() 1 0.1748 0.1759 0.1767 5.30% FillPatchIterator::Initialize 41 0.144 0.156 0.1675 5.02% Amr::initialInit() 1 0.1604 0.1613 0.1622 4.86% Castro::initialize_do_advance() 10 0.1531 0.1574 0.1607 4.82% Amr::InitializeInit() 1 0.05799 0.09306 0.1324 3.97% Amr::defBaseLevel() 1 0.05799 0.09306 0.1324 3.97% FillPatchIterator::FillFromLevel0() 41 0.1076 0.1155 0.1311 3.93% FillPatchSingleLevel 41 0.1075 0.1154 0.131 3.93% Castro::clean_state() 62 0.1138 0.1173 0.1214 3.64% check_for_negative_density() 10 0.05511 0.09112 0.1173 3.52% Castro::initData() 1 0.04097 0.07541 0.1142 3.42% Castro::expand_state() 10 0.09968 0.106 0.1114 3.34% Castro::estTimeStep() 21 0.0297 0.06913 0.1078 3.23% Amr::FinalizeInit() 1 0.0281 0.06827 0.1039 3.12% FabArray::ParallelCopy() 41 0.0774 0.08497 0.1011 3.03% Castro::do_old_sources() 10 0.08705 0.08946 0.09183 2.75% amrex::Copy() 193 0.06732 0.07394 0.07966 2.39% Castro::computeInitialDt() 2 0.00229 0.04213 0.07783 2.33% Castro::initialize_advance() 10 0.05894 0.06635 0.0699 2.10% FabArray::setVal() 143 0.05887 0.06363 0.06934 2.08% Castro::do_new_sources() 10 0.0595 0.06264 0.06837 2.05% Castro::computeTemp() 63 0.06164 0.06415 0.06581 1.97% FabArray::ParallelCopy_finish() 41 0.03736 0.04547 0.06477 1.94% Castro::normalize_species() 62 0.04509 0.04794 0.05209 1.56% Castro::reset_internal_energy(MultiFab) 63 0.04412 0.04594 0.04717 1.41% Castro::reset_internal_energy(Fab) 1008 0.04383 0.04564 0.04688 1.41% FabArray::ParallelCopy_nowait() 41 0.03624 0.03941 0.04128 1.24% Castro::construct_new_source() 50 0.02847 0.02987 0.03253 0.98% StateDataPhysBCFunct::() 41 0.02839 0.03039 0.03178 0.95% StateData::FillBoundary(geom) 41 0.02828 0.03028 0.03168 0.95% Gravity::interpolate_monopole_grav() 21 0.02642 0.02678 0.02746 0.82% Castro::construct_new_gravity_source() 10 0.02264 0.0239 0.02636 0.79% Castro::post_init() 1 0.02554 0.02573 0.02596 0.78% Castro::finalize_do_advance() 10 0.01337 0.01934 0.02312 0.69% Amr::writePlotFile() 2 0.02196 0.02209 0.02242 0.67% Castro::post_timestep() 10 0.01553 0.01624 0.01694 0.51% Castro::apply_source_to_state() 20 0.01109 0.01194 0.01292 0.39% FabArray::Saxpy() 20 0.01104 0.01189 0.01287 0.39% VisMF::Write(FabArray) 2 0.008972 0.009564 0.01209 0.36% Castro::check_for_nan() 20 0.01006 0.01089 0.01195 0.36% MultiFab::contains_nan() 20 0.01003 0.01087 0.01192 0.36% FabArray::setDomainBndry() 41 0.00723 0.009531 0.01181 0.35% Castro::Castro() 1 0.009926 0.01066 0.01158 0.35% Castro::construct_old_source() 50 0.007473 0.009188 0.01004 0.30% Castro::construct_old_gravity_source() 10 0.007413 0.00912 0.00996 0.30% Castro::computeNewDt() 9 0.008683 0.008697 0.008711 0.26% Castro::initMFs() 1 0.006335 0.007067 0.008142 0.24% AmrLevel::AmrLevel(dm) 1 0.005341 0.005887 0.006775 0.20% Other 260 0.0201 0.02483 0.02919 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 36 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8651 KiB 8666 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6746 KiB 6758 KiB 6762 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7124 KiB 7138 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4551 KiB 4565 KiB 4578 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 198 KiB 212 KiB 222 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2798 KiB 2803 KiB 2805 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 238 KiB 242 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 39 KiB 47 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 69 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized