Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:31 UTC on 2025-07-16. Successfully read inputs file ... Castro git describe: 25.07-5-g5d746e0a1 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07-5-gb321ef91 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014990615 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.353591151 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.329219636 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315558576 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314953588 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.364121832 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305269723 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.29347515 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.293845935 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.293136818 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.293073885 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007424392 seconds Ending run at 05:17:34 UTC on 2025-07-16. Run time = 3.337144238 Run time without initialization = 3.169202088 Average number of zones advanced per microsecond: 0.827 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3360 ... 3.3369 ... 3.3377 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1871 2.2248 2.2622 67.78% Gravity::make_radial_gravity() 21 0.2861 0.2958 0.3134 9.39% check_for_negative_density() 10 0.03315 0.07426 0.1136 3.40% Castro::initData() 1 0.03698 0.0709 0.1018 3.05% Castro::estTimeStep() 21 0.02074 0.05984 0.09774 2.93% amrex::Copy() 193 0.07093 0.08236 0.09045 2.71% FabArray::setVal() 143 0.06499 0.06994 0.07618 2.28% FabArray::ParallelCopy_finish() 41 0.03725 0.04525 0.06549 1.96% Castro::normalize_species() 62 0.04503 0.04638 0.05074 1.52% Castro::reset_internal_energy(Fab) 1008 0.04353 0.04636 0.04896 1.47% FabArray::ParallelCopy_nowait() 41 0.03686 0.04265 0.04438 1.33% FillPatchIterator::Initialize 41 0.0281 0.0338 0.03643 1.09% StateData::FillBoundary(geom) 41 0.02822 0.03175 0.03469 1.04% Gravity::interpolate_monopole_grav() 21 0.02639 0.02659 0.02689 0.81% Castro::construct_new_gravity_source() 10 0.02311 0.02473 0.02636 0.79% Castro::computeTemp() 63 0.01724 0.0182 0.01897 0.57% Castro::initialize_do_advance() 10 0.01196 0.01696 0.01865 0.56% Castro::initialize_advance() 10 0.01057 0.0126 0.01469 0.44% FabArray::Saxpy() 20 0.01184 0.01287 0.01377 0.41% FabArray::setDomainBndry() 41 0.007029 0.01124 0.01341 0.40% MultiFab::contains_nan() 20 0.01057 0.01136 0.01285 0.38% VisMF::Write(FabArray) 2 0.009384 0.009849 0.01215 0.36% Castro::construct_old_gravity_source() 10 0.007021 0.009861 0.01072 0.32% Amr::writePlotFile() 2 0.007567 0.009952 0.01044 0.31% Castro::initMFs() 1 0.006496 0.007039 0.008397 0.25% Castro::construct_new_source() 50 0.005795 0.00602 0.006255 0.19% main() 1 0.003825 0.0044 0.004842 0.15% Gravity::get_new_grav_vector() 11 0.003189 0.003602 0.004057 0.12% Amr::coarseTimeStep() 10 0.001162 0.002253 0.003087 0.09% Gravity::get_old_grav_vector() 10 0.001438 0.002107 0.002793 0.08% AmrLevel::FillPatch() 41 0.0007502 0.001158 0.001345 0.04% Castro::finalize_do_advance() 10 0.0005413 0.001098 0.001304 0.04% Amr::timeStep() 10 0.0001376 0.0001831 0.0004159 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002626 0.0002868 0.0003463 0.01% Castro::do_advance_ctu() 10 0.000146 0.0001658 0.000202 0.01% Castro::clean_state() 62 0.0001488 0.0001636 0.0001757 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001022 0.000113 0.0001297 0.00% StateDataPhysBCFunct::() 41 0.0001086 0.0001163 0.0001289 0.00% Castro::do_old_sources() 10 7.855e-05 9.644e-05 0.0001142 0.00% Amr::FinalizeInit() 1 3.453e-06 1.704e-05 0.0001037 0.00% FabArray::ParallelCopy() 41 8.462e-05 9.488e-05 0.0001025 0.00% Castro::Castro() 1 3.942e-05 6.235e-05 8.559e-05 0.00% FillPatchSingleLevel 41 7.624e-05 7.986e-05 8.359e-05 0.00% Castro::construct_old_source() 50 5.453e-05 6.957e-05 8.144e-05 0.00% Castro::do_new_sources() 10 5.313e-05 5.965e-05 6.841e-05 0.00% Castro::apply_source_to_state() 20 4.475e-05 5.347e-05 6.606e-05 0.00% Castro::advance() 10 3.816e-05 4.956e-05 6.49e-05 0.00% Amr::defBaseLevel() 1 3.305e-05 4.635e-05 5.985e-05 0.00% Castro::subcycle_advance_ctu() 10 4.076e-05 4.878e-05 5.289e-05 0.00% Castro::construct_new_gravity() 10 3.024e-05 3.75e-05 4.742e-05 0.00% Castro::construct_old_gravity() 10 3.39e-05 4.032e-05 4.694e-05 0.00% Castro::post_init() 1 1.453e-05 1.879e-05 3.174e-05 0.00% Castro::expand_state() 10 2.127e-05 2.581e-05 3.173e-05 0.00% Castro::check_for_nan() 20 2.363e-05 2.541e-05 2.803e-05 0.00% Castro::post_timestep() 10 1.474e-05 1.659e-05 1.91e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.79e-06 1.107e-05 1.357e-05 0.00% Castro::computeNewDt() 9 8.655e-06 1.004e-05 1.343e-05 0.00% Amr::InitializeInit() 1 2.497e-06 4.042e-06 6.703e-06 0.00% Amr::init() 1 1.951e-06 3.081e-06 6.292e-06 0.00% Castro::computeInitialDt() 2 2.898e-06 3.879e-06 5.313e-06 0.00% Amr::initialInit() 1 1.836e-06 2.208e-06 2.76e-06 0.00% Other 260 0.01562 0.01906 0.02104 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.336 3.337 3.338 100.00% Amr::coarseTimeStep() 10 3.157 3.157 3.157 94.59% Amr::timeStep() 10 3.144 3.145 3.146 94.26% Castro::advance() 10 3.128 3.129 3.129 93.75% Castro::subcycle_advance_ctu() 10 3.048 3.051 3.055 91.53% Castro::do_advance_ctu() 10 3.048 3.051 3.055 91.53% Castro::construct_ctu_hydro_source() 10 2.317 2.32 2.323 69.61% Gravity::make_radial_gravity() 21 0.3027 0.313 0.328 9.83% Gravity::get_new_grav_vector() 11 0.2112 0.2127 0.214 6.41% AmrLevel::FillPatch() 41 0.1881 0.199 0.2078 6.23% Castro::construct_old_gravity() 10 0.1767 0.183 0.1977 5.92% Gravity::get_old_grav_vector() 10 0.1758 0.1823 0.1971 5.91% Castro::construct_new_gravity() 10 0.1881 0.1887 0.1894 5.67% FillPatchIterator::Initialize 41 0.1572 0.1652 0.1718 5.15% Castro::initialize_do_advance() 10 0.1488 0.1645 0.1709 5.12% Amr::init() 1 0.1668 0.1678 0.1682 5.04% Amr::initialInit() 1 0.1516 0.1525 0.153 4.58% FillPatchIterator::FillFromLevel0() 41 0.1126 0.1202 0.1311 3.93% FillPatchSingleLevel 41 0.1125 0.12 0.131 3.92% Amr::InitializeInit() 1 0.058 0.09258 0.1239 3.71% Amr::defBaseLevel() 1 0.058 0.09257 0.1239 3.71% Castro::clean_state() 62 0.1118 0.1165 0.1206 3.61% Castro::expand_state() 10 0.1009 0.1109 0.1173 3.51% check_for_negative_density() 10 0.03315 0.07426 0.1136 3.40% Castro::initData() 1 0.04094 0.07479 0.1053 3.15% FabArray::ParallelCopy() 41 0.08084 0.0881 0.1026 3.07% Castro::do_old_sources() 10 0.09371 0.09585 0.09829 2.94% Castro::estTimeStep() 21 0.02074 0.05984 0.09774 2.93% Amr::FinalizeInit() 1 0.02798 0.05994 0.09449 2.83% amrex::Copy() 193 0.07093 0.08236 0.09045 2.71% Castro::initialize_advance() 10 0.07042 0.07396 0.07717 2.31% FabArray::setVal() 143 0.06499 0.06994 0.07618 2.28% Castro::do_new_sources() 10 0.06037 0.06448 0.07111 2.13% Castro::computeInitialDt() 2 0.002178 0.03406 0.06858 2.05% Castro::computeTemp() 63 0.06103 0.06484 0.06784 2.03% FabArray::ParallelCopy_finish() 41 0.03725 0.04525 0.06549 1.96% Castro::normalize_species() 62 0.04503 0.04638 0.05074 1.52% Castro::reset_internal_energy(MultiFab) 63 0.04379 0.04664 0.04925 1.48% Castro::reset_internal_energy(Fab) 1008 0.04353 0.04636 0.04896 1.47% FabArray::ParallelCopy_nowait() 41 0.03698 0.04275 0.04448 1.33% StateDataPhysBCFunct::() 41 0.02834 0.03186 0.03482 1.04% StateData::FillBoundary(geom) 41 0.02822 0.03175 0.03469 1.04% Castro::construct_new_source() 50 0.02904 0.03075 0.03256 0.98% Gravity::interpolate_monopole_grav() 21 0.02639 0.02659 0.02689 0.81% Castro::construct_new_gravity_source() 10 0.02311 0.02473 0.02636 0.79% Castro::post_init() 1 0.02502 0.02538 0.02549 0.76% Castro::finalize_do_advance() 10 0.01114 0.01829 0.02302 0.69% Amr::writePlotFile() 2 0.02268 0.02274 0.02284 0.68% Castro::post_timestep() 10 0.01534 0.01609 0.01707 0.51% Castro::apply_source_to_state() 20 0.01189 0.01292 0.01383 0.41% FabArray::Saxpy() 20 0.01184 0.01287 0.01377 0.41% FabArray::setDomainBndry() 41 0.007029 0.01124 0.01341 0.40% Castro::check_for_nan() 20 0.01059 0.01138 0.01288 0.39% MultiFab::contains_nan() 20 0.01057 0.01136 0.01285 0.38% VisMF::Write(FabArray) 2 0.009384 0.009849 0.01215 0.36% Castro::Castro() 1 0.01054 0.01104 0.01182 0.35% Castro::construct_old_source() 50 0.007076 0.009931 0.01079 0.32% Castro::construct_old_gravity_source() 10 0.007021 0.009861 0.01072 0.32% Castro::computeNewDt() 9 0.008593 0.008614 0.008636 0.26% Castro::initMFs() 1 0.006496 0.007039 0.008397 0.25% AmrLevel::AmrLevel(dm) 1 0.005376 0.005661 0.006373 0.19% Other 260 0.02033 0.02501 0.0279 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 38 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8667 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6770 KiB 6774 KiB 6776 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7138 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4563 KiB 4568 KiB 4573 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 210 KiB 224 KiB 235 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2809 KiB 2812 KiB 2812 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 239 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 40 KiB 46 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 70 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized