Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:19:42 UTC on 2025-07-17. Successfully read inputs file ... Castro git describe: 25.07-9-g24a10a625 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07-6-g7b85e975 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014287024 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.349311549 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.33895673 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.31021532 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.310311056 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.3743637 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305149612 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297923331 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29687272 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.318445684 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298990923 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007730389 seconds Ending run at 05:19:45 UTC on 2025-07-17. Run time = 3.403243183 Run time without initialization = 3.214155912 Average number of zones advanced per microsecond: 0.816 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3980 ... 3.4015 ... 3.4039 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1656 2.2165 2.2835 67.08% Gravity::make_radial_gravity() 21 0.2881 0.2957 0.3099 9.10% check_for_negative_density() 10 0.06116 0.1284 0.1785 5.24% Castro::estTimeStep() 21 0.02691 0.07542 0.1164 3.42% Castro::initData() 1 0.0369 0.07299 0.115 3.38% FabArray::ParallelCopy_finish() 41 0.04283 0.05833 0.09503 2.79% amrex::Copy() 193 0.0721 0.08046 0.08663 2.55% FabArray::setVal() 143 0.05191 0.06497 0.07085 2.08% Castro::reset_internal_energy(Fab) 1008 0.04174 0.04542 0.04783 1.41% Castro::normalize_species() 62 0.04477 0.04609 0.04744 1.39% FabArray::ParallelCopy_nowait() 41 0.03762 0.04234 0.04714 1.38% FillPatchIterator::Initialize 41 0.02854 0.03239 0.03437 1.01% StateData::FillBoundary(geom) 41 0.0281 0.03065 0.03181 0.93% Gravity::interpolate_monopole_grav() 21 0.02649 0.02671 0.02706 0.80% Castro::construct_new_gravity_source() 10 0.02332 0.02479 0.02705 0.79% Castro::computeTemp() 63 0.01646 0.01799 0.0189 0.56% FabArray::Saxpy() 20 0.01061 0.01338 0.01866 0.55% Castro::initialize_do_advance() 10 0.01152 0.01603 0.01766 0.52% Castro::initialize_advance() 10 0.005369 0.01073 0.01373 0.40% VisMF::Write(FabArray) 2 0.009119 0.009736 0.01272 0.37% FabArray::setDomainBndry() 41 0.007091 0.01023 0.01257 0.37% MultiFab::contains_nan() 20 0.01039 0.01125 0.01249 0.37% Castro::initMFs() 1 0.006383 0.007523 0.01071 0.31% Castro::construct_old_gravity_source() 10 0.007314 0.009611 0.01018 0.30% Amr::writePlotFile() 2 0.007355 0.009588 0.0101 0.30% StateData::define() 4 0.005297 0.006174 0.008368 0.25% Castro::construct_new_source() 50 0.005694 0.006037 0.006446 0.19% main() 1 0.003809 0.004503 0.005159 0.15% Gravity::get_new_grav_vector() 11 0.002868 0.003373 0.003782 0.11% Amr::coarseTimeStep() 10 0.001108 0.002007 0.003063 0.09% Gravity::get_old_grav_vector() 10 0.001587 0.002088 0.00264 0.08% Castro::finalize_do_advance() 10 0.000592 0.001173 0.001534 0.05% AmrLevel::FillPatch() 41 0.0009168 0.001062 0.001175 0.03% Amr::timeStep() 10 0.0001441 0.0001918 0.0004323 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002718 0.0002903 0.0003267 0.01% Castro::clean_state() 62 0.0001421 0.0001701 0.0002099 0.01% Castro::do_advance_ctu() 10 0.0001535 0.0001719 0.0001873 0.01% StateDataPhysBCFunct::() 41 9.495e-05 0.0001248 0.000157 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001011 0.0001073 0.0001155 0.00% FabArray::ParallelCopy() 41 8.869e-05 0.0001002 0.0001142 0.00% Castro::do_old_sources() 10 8.934e-05 9.636e-05 0.0001114 0.00% Castro::apply_source_to_state() 20 4.833e-05 6.217e-05 0.0001023 0.00% FillPatchSingleLevel 41 7.577e-05 8.304e-05 9.75e-05 0.00% Amr::FinalizeInit() 1 3.984e-06 1.586e-05 9.653e-05 0.00% Castro::Castro() 1 5.276e-05 6.445e-05 7.869e-05 0.00% Castro::construct_old_source() 50 5.746e-05 6.991e-05 7.695e-05 0.00% Castro::do_new_sources() 10 5.794e-05 6.462e-05 7.632e-05 0.00% Castro::advance() 10 4.629e-05 5.347e-05 6.703e-05 0.00% Castro::subcycle_advance_ctu() 10 4.401e-05 5.022e-05 5.749e-05 0.00% Castro::construct_old_gravity() 10 3.457e-05 4.19e-05 5.225e-05 0.00% Amr::defBaseLevel() 1 3.618e-05 4.154e-05 4.828e-05 0.00% Castro::construct_new_gravity() 10 2.803e-05 3.593e-05 4.789e-05 0.00% Castro::expand_state() 10 2.102e-05 2.692e-05 3.137e-05 0.00% Castro::check_for_nan() 20 2.313e-05 2.674e-05 2.886e-05 0.00% Castro::post_timestep() 10 1.513e-05 1.84e-05 2.488e-05 0.00% Castro::post_init() 1 1.46e-05 1.748e-05 2.197e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.657e-06 1.319e-05 1.931e-05 0.00% Castro::computeNewDt() 9 7.866e-06 9.966e-06 1.265e-05 0.00% Amr::InitializeInit() 1 2.52e-06 3.535e-06 6.992e-06 0.00% Castro::computeInitialDt() 2 3.53e-06 4e-06 4.407e-06 0.00% Amr::init() 1 2.061e-06 2.449e-06 2.98e-06 0.00% Amr::initialInit() 1 1.579e-06 2.041e-06 2.484e-06 0.00% Other 256 0.009835 0.01593 0.01969 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.398 3.401 3.404 100.00% Amr::coarseTimeStep() 10 3.201 3.201 3.201 94.05% Amr::timeStep() 10 3.188 3.189 3.19 93.73% Castro::advance() 10 3.173 3.174 3.174 93.25% Castro::subcycle_advance_ctu() 10 3.097 3.102 3.118 91.61% Castro::do_advance_ctu() 10 3.097 3.102 3.118 91.61% Castro::construct_ctu_hydro_source() 10 2.363 2.366 2.368 69.57% Gravity::make_radial_gravity() 21 0.3047 0.312 0.3239 9.52% AmrLevel::FillPatch() 41 0.1926 0.2084 0.2262 6.64% Gravity::get_new_grav_vector() 11 0.2089 0.2101 0.2119 6.23% FillPatchIterator::Initialize 41 0.1592 0.1745 0.197 5.79% Castro::construct_old_gravity() 10 0.178 0.1826 0.1931 5.67% Gravity::get_old_grav_vector() 10 0.1773 0.1819 0.1925 5.66% Amr::init() 1 0.184 0.1876 0.1896 5.57% Castro::construct_new_gravity() 10 0.1856 0.1861 0.1872 5.50% check_for_negative_density() 10 0.06116 0.1284 0.1785 5.24% Amr::initialInit() 1 0.1696 0.1733 0.1755 5.16% Castro::initialize_do_advance() 10 0.159 0.1632 0.1689 4.96% FillPatchIterator::FillFromLevel0() 41 0.1183 0.1318 0.1614 4.74% FillPatchSingleLevel 41 0.1182 0.1317 0.1612 4.74% Amr::InitializeInit() 1 0.06135 0.09812 0.1419 4.17% Amr::defBaseLevel() 1 0.06135 0.09812 0.1419 4.17% FabArray::ParallelCopy() 41 0.08654 0.1009 0.1329 3.90% Castro::expand_state() 10 0.1059 0.1107 0.1215 3.57% Castro::clean_state() 62 0.1086 0.1151 0.1187 3.49% Castro::initData() 1 0.04079 0.07673 0.1186 3.48% Castro::estTimeStep() 21 0.02691 0.07542 0.1164 3.42% Amr::FinalizeInit() 1 0.02771 0.07522 0.1133 3.33% Castro::do_old_sources() 10 0.1037 0.1069 0.1101 3.23% FabArray::ParallelCopy_finish() 41 0.04283 0.05833 0.09503 2.79% Castro::computeInitialDt() 2 0.002244 0.04957 0.08753 2.57% amrex::Copy() 193 0.0721 0.08046 0.08663 2.55% Castro::initialize_advance() 10 0.05143 0.06802 0.07297 2.14% FabArray::setVal() 143 0.05191 0.06497 0.07085 2.08% Castro::do_new_sources() 10 0.06002 0.0636 0.0689 2.02% Castro::computeTemp() 63 0.05848 0.0637 0.06703 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04201 0.04571 0.04813 1.41% Castro::reset_internal_energy(Fab) 1008 0.04174 0.04542 0.04783 1.41% Castro::normalize_species() 62 0.04477 0.04609 0.04744 1.39% FabArray::ParallelCopy_nowait() 41 0.03775 0.04244 0.04722 1.39% Castro::construct_new_source() 50 0.02918 0.03083 0.0335 0.98% StateDataPhysBCFunct::() 41 0.02826 0.03077 0.03191 0.94% StateData::FillBoundary(geom) 41 0.0281 0.03065 0.03181 0.93% Gravity::interpolate_monopole_grav() 21 0.02649 0.02671 0.02706 0.80% Castro::construct_new_gravity_source() 10 0.02332 0.02479 0.02705 0.79% Castro::post_init() 1 0.02483 0.02517 0.02544 0.75% Amr::writePlotFile() 2 0.02193 0.02204 0.02227 0.65% Castro::finalize_do_advance() 10 0.01308 0.01838 0.02208 0.65% Castro::apply_source_to_state() 20 0.01066 0.01344 0.01876 0.55% FabArray::Saxpy() 20 0.01061 0.01338 0.01866 0.55% Castro::post_timestep() 10 0.01466 0.0156 0.01609 0.47% Castro::Castro() 1 0.01033 0.01156 0.01479 0.43% VisMF::Write(FabArray) 2 0.009119 0.009736 0.01272 0.37% FabArray::setDomainBndry() 41 0.007091 0.01023 0.01257 0.37% Castro::check_for_nan() 20 0.01042 0.01128 0.01252 0.37% MultiFab::contains_nan() 20 0.01039 0.01125 0.01249 0.37% Castro::initMFs() 1 0.006383 0.007523 0.01071 0.31% Castro::construct_old_source() 50 0.007371 0.009681 0.01024 0.30% Castro::construct_old_gravity_source() 10 0.007314 0.009611 0.01018 0.30% Castro::computeNewDt() 9 0.008639 0.008647 0.008652 0.25% AmrLevel::AmrLevel(dm) 1 0.005306 0.006187 0.008388 0.25% StateData::define() 4 0.005297 0.006174 0.008368 0.25% Other 256 0.01444 0.02444 0.03054 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 36 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8648 KiB 8659 KiB 8663 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6733 KiB 6740 KiB 6747 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7121 KiB 7132 KiB 7139 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4549 KiB 4555 KiB 4572 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 212 KiB 229 KiB 251 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2793 KiB 2798 KiB 2801 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 233 KiB 242 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 44 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2024 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 68 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized