Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:29 UTC on 2025-07-18. Successfully read inputs file ... Castro git describe: 25.07-9-g24a10a625 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: 25.07-7-gadadfbe3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014672005 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348435145 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.334969586 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.323511207 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.323759374 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371837004 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305497607 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.301682038 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.302212169 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.301083351 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.301580117 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.0074517 seconds Ending run at 05:17:32 UTC on 2025-07-18. Run time = 3.397630714 Run time without initialization = 3.227053957 Average number of zones advanced per microsecond: 0.812 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3962 ... 3.3969 ... 3.3978 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1855 2.2350 2.2664 66.70% Gravity::make_radial_gravity() 21 0.3007 0.3062 0.3145 9.26% check_for_negative_density() 10 0.0429 0.07607 0.1315 3.87% Castro::initData() 1 0.03832 0.07254 0.1049 3.09% amrex::Copy() 193 0.08049 0.08638 0.09728 2.86% Castro::estTimeStep() 21 0.02671 0.06029 0.09587 2.82% FabArray::setVal() 143 0.06959 0.07379 0.07721 2.27% Castro::normalize_species() 62 0.05088 0.05709 0.07235 2.13% FabArray::ParallelCopy_finish() 41 0.03976 0.05485 0.0629 1.85% Castro::reset_internal_energy(Fab) 1008 0.04667 0.04756 0.0489 1.44% FabArray::ParallelCopy_nowait() 41 0.04079 0.04336 0.04532 1.33% FillPatchIterator::Initialize 41 0.02962 0.03434 0.03724 1.10% StateData::FillBoundary(geom) 41 0.02985 0.03242 0.03541 1.04% Gravity::interpolate_monopole_grav() 21 0.02689 0.02765 0.02866 0.84% Castro::construct_new_gravity_source() 10 0.02387 0.02481 0.02704 0.80% Castro::computeTemp() 63 0.01839 0.01886 0.01932 0.57% Castro::initialize_do_advance() 10 0.01465 0.01768 0.01883 0.55% Castro::initialize_advance() 10 0.01104 0.01274 0.01448 0.43% FabArray::Saxpy() 20 0.01183 0.01324 0.01417 0.42% MultiFab::contains_nan() 20 0.01107 0.01194 0.01266 0.37% FabArray::setDomainBndry() 41 0.007492 0.01054 0.01242 0.37% VisMF::Write(FabArray) 2 0.009176 0.009626 0.01202 0.35% Castro::construct_old_gravity_source() 10 0.008803 0.01004 0.01097 0.32% Amr::writePlotFile() 2 0.007291 0.009661 0.01011 0.30% Castro::initMFs() 1 0.006533 0.006884 0.008223 0.24% Castro::construct_new_source() 50 0.00617 0.006643 0.006931 0.20% Castro::enforce_min_density() 62 0.005916 0.006168 0.006417 0.19% Amr::coarseTimeStep() 10 0.0008363 0.003442 0.004823 0.14% main() 1 0.00369 0.004159 0.00448 0.13% Gravity::get_new_grav_vector() 11 0.003005 0.003409 0.003875 0.11% Gravity::get_old_grav_vector() 10 0.001902 0.00223 0.002568 0.08% Castro::finalize_do_advance() 10 0.001378 0.00143 0.001645 0.05% AmrLevel::FillPatch() 41 0.0009226 0.001036 0.001236 0.04% Amr::timeStep() 10 0.0001539 0.0002024 0.0004583 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002784 0.0002995 0.000366 0.01% Castro::do_advance_ctu() 10 0.000157 0.0001789 0.0002146 0.01% Castro::clean_state() 62 0.0001566 0.0001692 0.0001941 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001081 0.0001191 0.0001452 0.00% StateDataPhysBCFunct::() 41 0.0001098 0.0001304 0.0001438 0.00% Castro::do_old_sources() 10 8.001e-05 0.0001023 0.0001175 0.00% FabArray::ParallelCopy() 41 8.79e-05 9.745e-05 0.0001069 0.00% FillPatchSingleLevel 41 8.059e-05 8.994e-05 0.0001055 0.00% Amr::FinalizeInit() 1 3.013e-06 1.628e-05 9.787e-05 0.00% Castro::Castro() 1 4.576e-05 7.613e-05 9.721e-05 0.00% Castro::construct_old_source() 50 6.668e-05 7.332e-05 8.456e-05 0.00% Castro::do_new_sources() 10 5.541e-05 6.969e-05 8.25e-05 0.00% Castro::apply_source_to_state() 20 4.906e-05 5.808e-05 6.741e-05 0.00% Castro::subcycle_advance_ctu() 10 4.277e-05 5.55e-05 6.675e-05 0.00% Castro::advance() 10 4.377e-05 5.26e-05 6.323e-05 0.00% Castro::construct_old_gravity() 10 3.927e-05 4.498e-05 5.609e-05 0.00% Castro::construct_new_gravity() 10 3.218e-05 3.853e-05 4.603e-05 0.00% Amr::defBaseLevel() 1 3.428e-05 3.754e-05 4.168e-05 0.00% Castro::expand_state() 10 2.091e-05 2.79e-05 3.507e-05 0.00% Castro::check_for_nan() 20 2.427e-05 2.788e-05 3.284e-05 0.00% Castro::post_init() 1 1.315e-05 1.795e-05 2.422e-05 0.00% Castro::post_timestep() 10 1.487e-05 1.704e-05 2.015e-05 0.00% Castro::computeNewDt() 9 8.89e-06 1.05e-05 1.376e-05 0.00% Amr::InitializeInit() 1 2.609e-06 3.266e-06 5.457e-06 0.00% Castro::computeInitialDt() 2 3.089e-06 3.854e-06 4.893e-06 0.00% Amr::init() 1 1.79e-06 2.327e-06 2.72e-06 0.00% Amr::initialInit() 1 1.697e-06 2.028e-06 2.283e-06 0.00% Other 199 0.01047 0.01273 0.01437 0.42% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.396 3.397 3.398 100.00% Amr::coarseTimeStep() 10 3.215 3.215 3.215 94.63% Amr::timeStep() 10 3.2 3.201 3.204 94.29% Castro::advance() 10 3.182 3.183 3.183 93.68% Castro::subcycle_advance_ctu() 10 3.098 3.102 3.105 91.38% Castro::do_advance_ctu() 10 3.098 3.102 3.105 91.38% Castro::construct_ctu_hydro_source() 10 2.323 2.335 2.34 68.85% Gravity::make_radial_gravity() 21 0.3161 0.3225 0.3294 9.70% AmrLevel::FillPatch() 41 0.1976 0.2101 0.2307 6.79% Gravity::get_new_grav_vector() 11 0.2047 0.2089 0.2104 6.19% Castro::construct_old_gravity() 10 0.1973 0.2016 0.2072 6.10% Gravity::get_old_grav_vector() 10 0.1966 0.2009 0.2065 6.08% FillPatchIterator::Initialize 41 0.1647 0.1761 0.1898 5.59% Castro::construct_new_gravity() 10 0.1814 0.1855 0.1874 5.51% Castro::initialize_do_advance() 10 0.1621 0.1679 0.1723 5.07% Amr::init() 1 0.1692 0.1697 0.1702 5.01% Amr::initialInit() 1 0.1543 0.1549 0.1554 4.57% Castro::clean_state() 62 0.1233 0.1292 0.1463 4.31% FillPatchIterator::FillFromLevel0() 41 0.1161 0.1312 0.1426 4.20% FillPatchSingleLevel 41 0.116 0.1311 0.1425 4.19% check_for_negative_density() 10 0.0429 0.07607 0.1315 3.87% Amr::InitializeInit() 1 0.05961 0.09444 0.1273 3.75% Amr::defBaseLevel() 1 0.05961 0.09444 0.1273 3.75% Castro::do_old_sources() 10 0.09848 0.1066 0.1182 3.48% Castro::expand_state() 10 0.1067 0.112 0.1161 3.42% Castro::initData() 1 0.04284 0.07708 0.1099 3.23% FabArray::ParallelCopy() 41 0.08436 0.09842 0.1068 3.14% amrex::Copy() 193 0.08049 0.08638 0.09728 2.86% Castro::estTimeStep() 21 0.02671 0.06029 0.09587 2.82% Amr::FinalizeInit() 1 0.02781 0.06043 0.09499 2.80% Castro::initialize_advance() 10 0.07444 0.07717 0.08147 2.40% FabArray::setVal() 143 0.06959 0.07379 0.07721 2.27% Castro::normalize_species() 62 0.05088 0.05709 0.07235 2.13% Castro::do_new_sources() 10 0.0652 0.06836 0.07085 2.09% Castro::computeInitialDt() 2 0.002228 0.03476 0.06929 2.04% Castro::computeTemp() 63 0.06534 0.06671 0.06851 2.02% FabArray::ParallelCopy_finish() 41 0.03976 0.05485 0.0629 1.85% Castro::reset_internal_energy(MultiFab) 63 0.04695 0.04786 0.04919 1.45% Castro::reset_internal_energy(Fab) 1008 0.04667 0.04756 0.0489 1.44% FabArray::ParallelCopy_nowait() 41 0.04091 0.04347 0.04544 1.34% StateDataPhysBCFunct::() 41 0.02998 0.03255 0.03555 1.05% StateData::FillBoundary(geom) 41 0.02985 0.03242 0.03541 1.04% Castro::construct_new_source() 50 0.03022 0.03145 0.03397 1.00% Gravity::interpolate_monopole_grav() 21 0.02689 0.02765 0.02866 0.84% Castro::construct_new_gravity_source() 10 0.02387 0.02481 0.02704 0.80% Castro::post_init() 1 0.02444 0.02463 0.02508 0.74% Amr::writePlotFile() 2 0.02235 0.0224 0.0225 0.66% Castro::post_timestep() 10 0.01715 0.01832 0.02132 0.63% Castro::finalize_do_advance() 10 0.01444 0.01756 0.02107 0.62% Castro::apply_source_to_state() 20 0.01188 0.01329 0.01422 0.42% FabArray::Saxpy() 20 0.01183 0.01324 0.01417 0.42% Castro::check_for_nan() 20 0.0111 0.01197 0.01269 0.37% MultiFab::contains_nan() 20 0.01107 0.01194 0.01266 0.37% FabArray::setDomainBndry() 41 0.007492 0.01054 0.01242 0.37% VisMF::Write(FabArray) 2 0.009176 0.009626 0.01202 0.35% Castro::Castro() 1 0.0107 0.01109 0.01189 0.35% Castro::construct_old_source() 50 0.008872 0.01011 0.01104 0.33% Castro::construct_old_gravity_source() 10 0.008803 0.01004 0.01097 0.32% Castro::computeNewDt() 9 0.00937 0.009419 0.00944 0.28% Castro::initMFs() 1 0.006533 0.006884 0.008223 0.24% Castro::enforce_min_density() 62 0.005916 0.006168 0.006417 0.19% Other 199 0.02063 0.02453 0.02765 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8671 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6770 KiB 6777 KiB 6780 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4555 KiB 4561 KiB 4565 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 215 KiB 229 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2806 KiB 2810 KiB 2811 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 237 KiB 242 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 42 KiB 46 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 74 KiB 75 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized