Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:37 UTC on 2025-07-21. Successfully read inputs file ... Castro git describe: 25.07-11-gcb51e8cc9 AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014536653 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.347837998 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.326681106 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.318789523 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.358586375 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371715772 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306248574 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.29891559 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.300744118 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298166567 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298923154 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007375896 seconds Ending run at 05:17:40 UTC on 2025-07-21. Run time = 3.424560831 Run time without initialization = 3.239420518 Average number of zones advanced per microsecond: 0.809 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4226 ... 3.4236 ... 3.4248 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1730 2.2266 2.2872 66.78% Gravity::make_radial_gravity() 21 0.2993 0.305 0.3177 9.28% check_for_negative_density() 10 0.04936 0.1126 0.1703 4.97% FabArray::ParallelCopy_finish() 41 0.03552 0.07242 0.1208 3.53% Castro::initData() 1 0.03748 0.07517 0.1208 3.53% Castro::estTimeStep() 21 0.03167 0.07306 0.1129 3.30% FabArray::setVal() 143 0.05717 0.06996 0.08965 2.62% amrex::Copy() 193 0.06201 0.07956 0.08658 2.53% FabArray::ParallelCopy_nowait() 41 0.03369 0.04214 0.04934 1.44% Castro::reset_internal_energy(Fab) 1008 0.04558 0.04633 0.04707 1.37% Castro::normalize_species() 62 0.04528 0.04604 0.04683 1.37% FillPatchIterator::Initialize 41 0.0279 0.03511 0.03974 1.16% StateData::FillBoundary(geom) 41 0.02798 0.03183 0.03485 1.02% Gravity::interpolate_monopole_grav() 21 0.02665 0.02698 0.02738 0.80% Castro::construct_new_gravity_source() 10 0.02229 0.02341 0.02429 0.71% Castro::initialize_do_advance() 10 0.01106 0.01727 0.02302 0.67% Castro::computeTemp() 63 0.01798 0.01821 0.01859 0.54% Castro::initialize_advance() 10 0.005203 0.01131 0.01642 0.48% MultiFab::contains_nan() 20 0.01065 0.01188 0.01419 0.41% FabArray::Saxpy() 20 0.01076 0.01211 0.01326 0.39% FabArray::setDomainBndry() 41 0.006619 0.01084 0.01284 0.38% Amr::writePlotFile() 2 0.007569 0.01014 0.01265 0.37% VisMF::Write(FabArray) 2 0.008349 0.009575 0.01197 0.35% Castro::construct_old_gravity_source() 10 0.00635 0.008665 0.009243 0.27% Castro::initMFs() 1 0.006654 0.007278 0.008177 0.24% Castro::construct_new_source() 50 0.005801 0.006097 0.006273 0.18% main() 1 0.003721 0.004305 0.004897 0.14% Gravity::get_new_grav_vector() 11 0.00282 0.0036 0.003969 0.12% Gravity::get_old_grav_vector() 10 0.001552 0.001969 0.002248 0.07% Amr::coarseTimeStep() 10 0.001277 0.00174 0.002154 0.06% Castro::finalize_do_advance() 10 0.0005724 0.001163 0.001284 0.04% AmrLevel::FillPatch() 41 0.0007303 0.0009708 0.001193 0.03% Amr::timeStep() 10 0.0001436 0.0001824 0.0003685 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002654 0.0002809 0.0003001 0.01% Castro::do_advance_ctu() 10 0.0001345 0.0001678 0.0002122 0.01% Castro::clean_state() 62 0.0001386 0.0001461 0.0001569 0.00% StateDataPhysBCFunct::() 41 9.791e-05 0.0001175 0.0001464 0.00% FillPatchIterator::FillFromLevel0() 41 9.515e-05 0.0001037 0.0001156 0.00% FabArray::ParallelCopy() 41 8.175e-05 8.875e-05 0.0001072 0.00% Castro::do_old_sources() 10 8.603e-05 9.437e-05 0.0001062 0.00% Castro::subcycle_advance_ctu() 10 3.874e-05 6.077e-05 0.0001008 0.00% FillPatchSingleLevel 41 7.538e-05 8.154e-05 9.888e-05 0.00% Castro::construct_old_source() 50 4.919e-05 6.539e-05 8.549e-05 0.00% Amr::FinalizeInit() 1 3.292e-06 1.374e-05 7.782e-05 0.00% Castro::advance() 10 3.83e-05 5.378e-05 7.49e-05 0.00% Castro::Castro() 1 4.241e-05 5.652e-05 7.249e-05 0.00% Castro::do_new_sources() 10 5.48e-05 5.97e-05 6.664e-05 0.00% Castro::construct_old_gravity() 10 4.026e-05 4.847e-05 6.466e-05 0.00% Castro::apply_source_to_state() 20 3.999e-05 5.089e-05 6.255e-05 0.00% Amr::defBaseLevel() 1 3.314e-05 4.057e-05 5.239e-05 0.00% Castro::construct_new_gravity() 10 3.168e-05 3.594e-05 4.029e-05 0.00% Castro::check_for_nan() 20 2.585e-05 2.667e-05 2.848e-05 0.00% Castro::expand_state() 10 2.068e-05 2.387e-05 2.739e-05 0.00% Castro::post_timestep() 10 1.458e-05 1.637e-05 1.949e-05 0.00% Castro::post_init() 1 1.397e-05 1.475e-05 1.623e-05 0.00% Castro::computeNewDt() 9 8.797e-06 9.529e-06 1.062e-05 0.00% Amr::InitializeInit() 1 2.594e-06 3.423e-06 5.442e-06 0.00% Amr::init() 1 1.886e-06 2.723e-06 4.91e-06 0.00% Castro::computeInitialDt() 2 3.101e-06 3.635e-06 4.39e-06 0.00% Amr::initialInit() 1 1.374e-06 1.818e-06 2.496e-06 0.00% Other 261 0.01588 0.01842 0.0204 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.423 3.424 3.425 100.00% Amr::coarseTimeStep() 10 3.227 3.227 3.227 94.23% Amr::timeStep() 10 3.215 3.216 3.216 93.91% Castro::advance() 10 3.199 3.2 3.2 93.43% Castro::subcycle_advance_ctu() 10 3.107 3.125 3.141 91.72% Castro::do_advance_ctu() 10 3.107 3.125 3.141 91.72% Castro::construct_ctu_hydro_source() 10 2.356 2.361 2.365 69.05% Gravity::make_radial_gravity() 21 0.3171 0.3215 0.3298 9.63% AmrLevel::FillPatch() 41 0.2011 0.2256 0.2431 7.10% FillPatchIterator::Initialize 41 0.1671 0.1928 0.2175 6.35% Gravity::get_new_grav_vector() 11 0.2083 0.2094 0.21 6.13% Castro::construct_old_gravity() 10 0.1903 0.1952 0.2014 5.88% Castro::initialize_do_advance() 10 0.1748 0.1909 0.2012 5.87% Gravity::get_old_grav_vector() 10 0.1896 0.1943 0.2004 5.85% Castro::construct_new_gravity() 10 0.1856 0.1865 0.1872 5.47% Amr::init() 1 0.1837 0.1844 0.1849 5.40% FillPatchIterator::FillFromLevel0() 41 0.1149 0.1469 0.183 5.34% FillPatchSingleLevel 41 0.1148 0.1468 0.1829 5.34% check_for_negative_density() 10 0.04936 0.1126 0.1703 4.97% Amr::initialInit() 1 0.1684 0.1696 0.1702 4.97% FabArray::ParallelCopy() 41 0.07978 0.1147 0.1547 4.52% Castro::expand_state() 10 0.1153 0.1362 0.1516 4.43% Amr::InitializeInit() 1 0.05844 0.09656 0.1426 4.16% Amr::defBaseLevel() 1 0.05844 0.09656 0.1426 4.16% Castro::initData() 1 0.04139 0.07893 0.1244 3.63% FabArray::ParallelCopy_finish() 41 0.03552 0.07242 0.1208 3.53% Castro::clean_state() 62 0.1142 0.116 0.1175 3.43% Castro::estTimeStep() 21 0.03167 0.07306 0.1129 3.30% Amr::FinalizeInit() 1 0.02581 0.07299 0.1117 3.26% Castro::do_old_sources() 10 0.09391 0.09693 0.09964 2.91% FabArray::setVal() 143 0.05717 0.06996 0.08965 2.62% Castro::initialize_advance() 10 0.05443 0.07168 0.0895 2.61% Castro::computeInitialDt() 2 0.002061 0.04878 0.08735 2.55% amrex::Copy() 193 0.06201 0.07956 0.08658 2.53% Castro::do_new_sources() 10 0.05778 0.0624 0.06626 1.93% Castro::computeTemp() 63 0.06383 0.06482 0.06596 1.93% FabArray::ParallelCopy_nowait() 41 0.03378 0.04223 0.04942 1.44% Castro::reset_internal_energy(MultiFab) 63 0.04584 0.04661 0.04736 1.38% Castro::reset_internal_energy(Fab) 1008 0.04558 0.04633 0.04707 1.37% Castro::normalize_species() 62 0.04528 0.04604 0.04683 1.37% StateDataPhysBCFunct::() 41 0.02813 0.03194 0.03497 1.02% StateData::FillBoundary(geom) 41 0.02798 0.03183 0.03485 1.02% Castro::construct_new_source() 50 0.02809 0.02951 0.03039 0.89% Gravity::interpolate_monopole_grav() 21 0.02665 0.02698 0.02738 0.80% Castro::construct_new_gravity_source() 10 0.02229 0.02341 0.02429 0.71% Castro::post_init() 1 0.02348 0.02373 0.02393 0.70% Amr::writePlotFile() 2 0.02215 0.02228 0.02274 0.66% Castro::finalize_do_advance() 10 0.01187 0.01678 0.0215 0.63% Castro::post_timestep() 10 0.01548 0.01583 0.01638 0.48% Castro::check_for_nan() 20 0.01067 0.01191 0.01421 0.42% MultiFab::contains_nan() 20 0.01065 0.01188 0.01419 0.41% Castro::apply_source_to_state() 20 0.0108 0.01217 0.01332 0.39% FabArray::Saxpy() 20 0.01076 0.01211 0.01326 0.39% FabArray::setDomainBndry() 41 0.006619 0.01084 0.01284 0.38% VisMF::Write(FabArray) 2 0.008349 0.009575 0.01197 0.35% Castro::Castro() 1 0.01028 0.01103 0.01186 0.35% Castro::construct_old_source() 50 0.006399 0.00873 0.009328 0.27% Castro::construct_old_gravity_source() 10 0.00635 0.008665 0.009243 0.27% Castro::computeNewDt() 9 0.008662 0.00868 0.008704 0.25% Castro::initMFs() 1 0.006654 0.007278 0.008177 0.24% Other 261 0.02585 0.02978 0.03315 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6742 KiB 6750 KiB 6755 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4534 KiB 4559 KiB 4585 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 222 KiB 257 KiB 281 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2799 KiB 2802 KiB 2804 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 239 KiB 245 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 55 KiB 76 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 72 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized