Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:39 UTC on 2025-07-22. Successfully read inputs file ... Castro git describe: 25.07-12-g2c8f2fc1e AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015661463 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.349047348 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.333390524 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.31871518 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320091626 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.36399751 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305709065 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299274885 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297503791 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298013173 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.316564085 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007517303 seconds Ending run at 05:17:43 UTC on 2025-07-22. Run time = 3.385481573 Run time without initialization = 3.215166026 Average number of zones advanced per microsecond: 0.815 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3846 ... 3.3853 ... 3.3862 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1866 2.2240 2.2880 67.57% Gravity::make_radial_gravity() 21 0.297 0.3068 0.3222 9.52% check_for_negative_density() 10 0.03448 0.1091 0.147 4.34% Castro::initData() 1 0.03931 0.07174 0.1022 3.02% Castro::estTimeStep() 21 0.0309 0.05898 0.09525 2.81% amrex::Copy() 193 0.07344 0.08254 0.0929 2.74% FabArray::ParallelCopy_finish() 41 0.04648 0.05501 0.0907 2.68% FabArray::setVal() 143 0.05468 0.06549 0.07088 2.09% FabArray::ParallelCopy_nowait() 41 0.03643 0.04262 0.04969 1.47% Castro::normalize_species() 62 0.04507 0.0462 0.04933 1.46% Castro::reset_internal_energy(Fab) 1008 0.04479 0.04624 0.0474 1.40% StateData::FillBoundary(geom) 41 0.03051 0.03232 0.03644 1.08% FillPatchIterator::Initialize 41 0.02775 0.03361 0.03588 1.06% Gravity::interpolate_monopole_grav() 21 0.02628 0.0267 0.02723 0.80% Castro::construct_new_gravity_source() 10 0.02332 0.02475 0.02629 0.78% Castro::computeTemp() 63 0.01757 0.01823 0.01899 0.56% Castro::initialize_do_advance() 10 0.01171 0.01663 0.01802 0.53% FabArray::Saxpy() 20 0.01043 0.01261 0.01394 0.41% Castro::initialize_advance() 10 0.005386 0.01065 0.01357 0.40% Amr::writePlotFile() 2 0.007749 0.01102 0.01302 0.38% VisMF::Write(FabArray) 2 0.008634 0.009853 0.01293 0.38% FabArray::setDomainBndry() 41 0.007135 0.01078 0.01286 0.38% MultiFab::contains_nan() 20 0.01092 0.01161 0.01281 0.38% Castro::construct_old_gravity_source() 10 0.007572 0.009661 0.01032 0.30% Castro::initMFs() 1 0.006755 0.007189 0.008486 0.25% Castro::construct_new_source() 50 0.005844 0.006105 0.00644 0.19% Castro::enforce_min_density() 62 0.005613 0.006041 0.006292 0.19% main() 1 0.003611 0.004202 0.004721 0.14% Gravity::get_new_grav_vector() 11 0.003043 0.00361 0.003983 0.12% Gravity::get_old_grav_vector() 10 0.001733 0.002139 0.003016 0.09% Amr::coarseTimeStep() 10 0.001457 0.001881 0.002403 0.07% Castro::finalize_do_advance() 10 0.0004725 0.001168 0.00171 0.05% AmrLevel::FillPatch() 41 0.0006987 0.001061 0.001291 0.04% Amr::timeStep() 10 0.0001279 0.0001922 0.0004648 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002766 0.0003069 0.0004294 0.01% Castro::do_advance_ctu() 10 0.0001275 0.0001646 0.0002229 0.01% Castro::clean_state() 62 0.0001482 0.000162 0.0001809 0.01% StateDataPhysBCFunct::() 41 9.951e-05 0.0001351 0.0001669 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001046 0.0001104 0.0001193 0.00% Castro::do_old_sources() 10 7.074e-05 9.135e-05 0.0001077 0.00% FabArray::ParallelCopy() 41 8.36e-05 9.174e-05 0.0001006 0.00% FillPatchSingleLevel 41 7.893e-05 8.626e-05 9.819e-05 0.00% Castro::construct_old_source() 50 5.102e-05 6.917e-05 8.928e-05 0.00% Castro::Castro() 1 4.224e-05 7.116e-05 8.911e-05 0.00% Amr::FinalizeInit() 1 3.825e-06 1.512e-05 8.906e-05 0.00% Castro::do_new_sources() 10 5.547e-05 6.355e-05 7.748e-05 0.00% Castro::apply_source_to_state() 20 4.127e-05 5.395e-05 6.481e-05 0.00% Castro::subcycle_advance_ctu() 10 4.299e-05 5.003e-05 6.004e-05 0.00% Castro::advance() 10 3.769e-05 4.487e-05 5.64e-05 0.00% Amr::defBaseLevel() 1 3.731e-05 4.206e-05 4.775e-05 0.00% Castro::construct_old_gravity() 10 3.419e-05 4.007e-05 4.502e-05 0.00% Castro::construct_new_gravity() 10 3.158e-05 3.594e-05 4.336e-05 0.00% Castro::post_init() 1 1.429e-05 1.798e-05 3.624e-05 0.00% Castro::expand_state() 10 2.257e-05 2.752e-05 3.188e-05 0.00% Castro::check_for_nan() 20 2.306e-05 2.599e-05 2.867e-05 0.00% Castro::post_timestep() 10 1.324e-05 1.741e-05 2.764e-05 0.00% Castro::computeNewDt() 9 9.358e-06 1.005e-05 1.108e-05 0.00% Amr::InitializeInit() 1 2.621e-06 3.556e-06 7.031e-06 0.00% Castro::computeInitialDt() 2 3.346e-06 3.942e-06 4.33e-06 0.00% Amr::initialInit() 1 1.638e-06 1.987e-06 2.67e-06 0.00% Amr::init() 1 1.796e-06 2.319e-06 2.624e-06 0.00% Other 199 0.01026 0.01283 0.01478 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.385 3.385 3.386 100.00% Amr::coarseTimeStep() 10 3.203 3.203 3.203 94.59% Amr::timeStep() 10 3.191 3.191 3.192 94.26% Castro::advance() 10 3.175 3.175 3.176 93.79% Castro::subcycle_advance_ctu() 10 3.1 3.104 3.117 92.04% Castro::do_advance_ctu() 10 3.099 3.104 3.117 92.04% Castro::construct_ctu_hydro_source() 10 2.344 2.354 2.366 69.88% Gravity::make_radial_gravity() 21 0.3132 0.3235 0.336 9.92% AmrLevel::FillPatch() 41 0.2017 0.2099 0.223 6.58% Gravity::get_new_grav_vector() 11 0.2157 0.2166 0.2172 6.41% Castro::construct_old_gravity() 10 0.1827 0.1887 0.2001 5.91% Gravity::get_old_grav_vector() 10 0.1819 0.188 0.1994 5.89% FillPatchIterator::Initialize 41 0.1677 0.1749 0.1932 5.71% Castro::construct_new_gravity() 10 0.1899 0.1911 0.1921 5.67% Amr::init() 1 0.1693 0.1702 0.1708 5.04% Castro::initialize_do_advance() 10 0.16 0.1661 0.1691 4.99% FillPatchIterator::FillFromLevel0() 41 0.122 0.1305 0.1583 4.68% FillPatchSingleLevel 41 0.1219 0.1304 0.1582 4.67% Amr::initialInit() 1 0.1534 0.1544 0.1549 4.57% check_for_negative_density() 10 0.03448 0.1091 0.147 4.34% FabArray::ParallelCopy() 41 0.08852 0.09782 0.1273 3.76% Amr::InitializeInit() 1 0.06109 0.0936 0.1241 3.66% Amr::defBaseLevel() 1 0.06108 0.0936 0.1241 3.66% Castro::expand_state() 10 0.1057 0.1123 0.1215 3.59% Castro::clean_state() 62 0.1138 0.1163 0.1173 3.46% Castro::do_old_sources() 10 0.09552 0.1056 0.1119 3.30% Castro::initData() 1 0.04325 0.07567 0.106 3.13% Castro::estTimeStep() 21 0.0309 0.05898 0.09525 2.81% Amr::FinalizeInit() 1 0.02941 0.06079 0.09349 2.76% amrex::Copy() 193 0.07344 0.08254 0.0929 2.74% FabArray::ParallelCopy_finish() 41 0.04648 0.05501 0.0907 2.68% Castro::initialize_advance() 10 0.0548 0.06824 0.07257 2.14% FabArray::setVal() 143 0.05468 0.06549 0.07088 2.09% Castro::do_new_sources() 10 0.06079 0.06375 0.06835 2.02% Castro::computeTemp() 63 0.06279 0.06477 0.0666 1.97% Castro::computeInitialDt() 2 0.002209 0.03353 0.0662 1.96% FabArray::ParallelCopy_nowait() 41 0.03654 0.04272 0.04977 1.47% Castro::normalize_species() 62 0.04507 0.0462 0.04933 1.46% Castro::reset_internal_energy(MultiFab) 63 0.04509 0.04654 0.0477 1.41% Castro::reset_internal_energy(Fab) 1008 0.04479 0.04624 0.0474 1.40% StateDataPhysBCFunct::() 41 0.03064 0.03246 0.03655 1.08% StateData::FillBoundary(geom) 41 0.03051 0.03232 0.03644 1.08% Castro::construct_new_source() 50 0.02919 0.03086 0.03271 0.97% Gravity::interpolate_monopole_grav() 21 0.02628 0.0267 0.02723 0.80% Castro::post_init() 1 0.02654 0.02677 0.02706 0.80% Castro::construct_new_gravity_source() 10 0.02332 0.02475 0.02629 0.78% Amr::writePlotFile() 2 0.02315 0.02348 0.02368 0.70% Castro::finalize_do_advance() 10 0.01297 0.01807 0.02176 0.64% Castro::post_timestep() 10 0.01554 0.01593 0.01618 0.48% Castro::apply_source_to_state() 20 0.01048 0.01267 0.01399 0.41% FabArray::Saxpy() 20 0.01043 0.01261 0.01394 0.41% VisMF::Write(FabArray) 2 0.008634 0.009853 0.01293 0.38% FabArray::setDomainBndry() 41 0.007135 0.01078 0.01286 0.38% Castro::check_for_nan() 20 0.01094 0.01164 0.01284 0.38% MultiFab::contains_nan() 20 0.01092 0.01161 0.01281 0.38% Castro::Castro() 1 0.0106 0.01115 0.0122 0.36% Castro::construct_old_source() 50 0.007623 0.00973 0.0104 0.31% Castro::construct_old_gravity_source() 10 0.007572 0.009661 0.01032 0.30% Castro::computeNewDt() 9 0.008551 0.008555 0.00856 0.25% Castro::initMFs() 1 0.006755 0.007189 0.008486 0.25% Castro::enforce_min_density() 62 0.005613 0.006041 0.006292 0.19% Other 199 0.0203 0.02443 0.02785 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 37 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6769 KiB 6776 KiB 6781 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7139 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4573 KiB 4580 KiB 4601 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 222 KiB 232 KiB 250 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2809 KiB 2813 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 243 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 43 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 82 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized