Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:36 UTC on 2025-07-23. Successfully read inputs file ... Castro git describe: 25.07-12-g2c8f2fc1e AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014709807 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.345022716 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.343970398 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314145896 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.313697637 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.366352875 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305664739 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.293142799 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299336381 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296695747 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295341365 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007504836 seconds Ending run at 05:17:39 UTC on 2025-07-23. Run time = 3.352725593 Run time without initialization = 3.186590087 Average number of zones advanced per microsecond: 0.823 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3509 ... 3.3518 ... 3.3528 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1715 2.2243 2.2970 68.51% Gravity::make_radial_gravity() 21 0.2879 0.298 0.3157 9.42% check_for_negative_density() 10 0.02729 0.1044 0.1584 4.72% Castro::initData() 1 0.03736 0.07283 0.1017 3.03% Castro::estTimeStep() 21 0.02199 0.05621 0.09671 2.88% FabArray::ParallelCopy_finish() 41 0.03607 0.04817 0.08829 2.63% amrex::Copy() 193 0.0639 0.07778 0.08574 2.56% FabArray::setVal() 143 0.05305 0.06559 0.07188 2.14% Castro::reset_internal_energy(Fab) 1008 0.04419 0.04615 0.0491 1.46% Castro::normalize_species() 62 0.04472 0.04604 0.04881 1.46% FabArray::ParallelCopy_nowait() 41 0.03546 0.04099 0.04271 1.27% StateData::FillBoundary(geom) 41 0.02799 0.03141 0.03535 1.05% FillPatchIterator::Initialize 41 0.02802 0.03202 0.03412 1.02% Gravity::interpolate_monopole_grav() 21 0.02627 0.02661 0.02683 0.80% Castro::construct_new_gravity_source() 10 0.02285 0.02458 0.0266 0.79% Castro::computeTemp() 63 0.01757 0.01815 0.01883 0.56% Castro::initialize_do_advance() 10 0.01147 0.01611 0.01719 0.51% Castro::initialize_advance() 10 0.00528 0.01073 0.01413 0.42% FabArray::Saxpy() 20 0.01068 0.01258 0.01389 0.41% VisMF::Write(FabArray) 2 0.009377 0.009967 0.01322 0.39% MultiFab::contains_nan() 20 0.01082 0.01158 0.01282 0.38% FabArray::setDomainBndry() 41 0.007192 0.0104 0.01264 0.38% Amr::writePlotFile() 2 0.007358 0.009567 0.01007 0.30% Castro::construct_old_gravity_source() 10 0.006911 0.009447 0.01004 0.30% Castro::initMFs() 1 0.006543 0.007177 0.007951 0.24% Castro::construct_new_source() 50 0.005499 0.005951 0.006369 0.19% Castro::enforce_min_density() 62 0.005676 0.005958 0.006353 0.19% main() 1 0.003972 0.004669 0.005077 0.15% Gravity::get_new_grav_vector() 11 0.00298 0.003455 0.003808 0.11% Amr::coarseTimeStep() 10 0.001092 0.001914 0.002592 0.08% Gravity::get_old_grav_vector() 10 0.001428 0.00194 0.002193 0.07% Castro::finalize_do_advance() 10 0.0005566 0.001212 0.001701 0.05% AmrLevel::FillPatch() 41 0.0007662 0.001072 0.001206 0.04% Amr::timeStep() 10 0.0001363 0.0001783 0.0003818 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000264 0.0002856 0.000325 0.01% Castro::do_advance_ctu() 10 0.0001395 0.0001602 0.0001913 0.01% Castro::clean_state() 62 0.0001467 0.0001537 0.0001733 0.01% StateDataPhysBCFunct::() 41 0.0001052 0.0001207 0.0001351 0.00% Castro::do_old_sources() 10 7.935e-05 8.988e-05 0.0001121 0.00% FillPatchIterator::FillFromLevel0() 41 9.397e-05 0.0001008 0.0001072 0.00% FabArray::ParallelCopy() 41 7.616e-05 8.685e-05 9.873e-05 0.00% FillPatchSingleLevel 41 7.322e-05 7.867e-05 8.281e-05 0.00% Amr::FinalizeInit() 1 3.113e-06 1.487e-05 8.139e-05 0.00% Castro::Castro() 1 4.975e-05 6.34e-05 8.019e-05 0.00% Castro::construct_old_source() 50 4.706e-05 6.524e-05 7.379e-05 0.00% Castro::do_new_sources() 10 5.392e-05 5.888e-05 6.822e-05 0.00% Castro::apply_source_to_state() 20 4.035e-05 5.353e-05 6.487e-05 0.00% Castro::advance() 10 3.532e-05 4.542e-05 5.783e-05 0.00% Castro::construct_old_gravity() 10 3.432e-05 3.969e-05 5.163e-05 0.00% Castro::subcycle_advance_ctu() 10 4.202e-05 4.72e-05 5.142e-05 0.00% Amr::defBaseLevel() 1 3.541e-05 4.179e-05 4.75e-05 0.00% Castro::construct_new_gravity() 10 3.101e-05 3.64e-05 4.415e-05 0.00% Castro::check_for_nan() 20 2.398e-05 2.644e-05 2.972e-05 0.00% Castro::expand_state() 10 2.117e-05 2.288e-05 2.58e-05 0.00% Castro::post_init() 1 1.395e-05 1.546e-05 1.799e-05 0.00% Castro::post_timestep() 10 1.403e-05 1.575e-05 1.763e-05 0.00% Castro::computeNewDt() 9 8.318e-06 9.382e-06 1.045e-05 0.00% Amr::InitializeInit() 1 2.595e-06 3.901e-06 6.543e-06 0.00% Amr::init() 1 1.863e-06 2.633e-06 5.055e-06 0.00% Castro::computeInitialDt() 2 2.812e-06 3.37e-06 4.024e-06 0.00% Amr::initialInit() 1 1.309e-06 1.916e-06 2.942e-06 0.00% Other 199 0.009296 0.01296 0.01482 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.351 3.352 3.353 100.00% Amr::coarseTimeStep() 10 3.174 3.174 3.174 94.67% Amr::timeStep() 10 3.162 3.163 3.163 94.35% Castro::advance() 10 3.146 3.147 3.147 93.86% Castro::subcycle_advance_ctu() 10 3.069 3.075 3.091 92.19% Castro::do_advance_ctu() 10 3.069 3.075 3.091 92.19% Castro::construct_ctu_hydro_source() 10 2.346 2.35 2.353 70.17% Gravity::make_radial_gravity() 21 0.3041 0.3141 0.3286 9.80% AmrLevel::FillPatch() 41 0.1776 0.1952 0.2123 6.33% Gravity::get_new_grav_vector() 11 0.2071 0.2084 0.21 6.26% Castro::construct_old_gravity() 10 0.1788 0.1855 0.1984 5.92% Gravity::get_old_grav_vector() 10 0.1781 0.1848 0.1978 5.90% FillPatchIterator::Initialize 41 0.1465 0.1635 0.1874 5.59% Castro::construct_new_gravity() 10 0.1842 0.1851 0.1863 5.56% Castro::initialize_do_advance() 10 0.1593 0.1632 0.1666 4.97% Amr::init() 1 0.1643 0.1652 0.1658 4.94% check_for_negative_density() 10 0.02729 0.1044 0.1584 4.72% FillPatchIterator::FillFromLevel0() 41 0.1097 0.121 0.1522 4.54% FillPatchSingleLevel 41 0.1096 0.1209 0.1521 4.54% Amr::initialInit() 1 0.1498 0.1507 0.1514 4.51% FabArray::ParallelCopy() 41 0.07889 0.08934 0.1239 3.70% Amr::InitializeInit() 1 0.0581 0.09431 0.1233 3.68% Amr::defBaseLevel() 1 0.05809 0.0943 0.1233 3.68% Castro::clean_state() 62 0.112 0.1159 0.1226 3.66% Castro::expand_state() 10 0.1029 0.1101 0.1196 3.57% Castro::initData() 1 0.04112 0.07656 0.1056 3.15% Castro::estTimeStep() 21 0.02199 0.05621 0.09671 2.88% Castro::do_old_sources() 10 0.08971 0.09371 0.09554 2.85% Amr::FinalizeInit() 1 0.0273 0.05637 0.0929 2.77% FabArray::ParallelCopy_finish() 41 0.03607 0.04817 0.08829 2.63% amrex::Copy() 193 0.0639 0.07778 0.08574 2.56% Castro::initialize_advance() 10 0.05166 0.06831 0.07427 2.22% FabArray::setVal() 143 0.05305 0.06559 0.07188 2.14% Castro::do_new_sources() 10 0.0597 0.06365 0.06934 2.07% Castro::computeTemp() 63 0.06207 0.06459 0.06819 2.03% Castro::computeInitialDt() 2 0.002109 0.03128 0.06802 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04446 0.04644 0.04942 1.47% Castro::reset_internal_energy(Fab) 1008 0.04419 0.04615 0.0491 1.46% Castro::normalize_species() 62 0.04472 0.04604 0.04881 1.46% FabArray::ParallelCopy_nowait() 41 0.03558 0.04109 0.04282 1.28% StateDataPhysBCFunct::() 41 0.0281 0.03153 0.03549 1.06% StateData::FillBoundary(geom) 41 0.02799 0.03141 0.03535 1.05% Castro::construct_new_source() 50 0.02881 0.03053 0.03297 0.98% Gravity::interpolate_monopole_grav() 21 0.02627 0.02661 0.02683 0.80% Castro::construct_new_gravity_source() 10 0.02285 0.02458 0.0266 0.79% Castro::post_init() 1 0.02442 0.02458 0.02476 0.74% Amr::writePlotFile() 2 0.02204 0.02217 0.02248 0.67% Castro::finalize_do_advance() 10 0.01152 0.01763 0.0219 0.65% Castro::post_timestep() 10 0.01536 0.01584 0.01638 0.49% Castro::apply_source_to_state() 20 0.01072 0.01263 0.01395 0.42% FabArray::Saxpy() 20 0.01068 0.01258 0.01389 0.41% VisMF::Write(FabArray) 2 0.009377 0.009967 0.01322 0.39% Castro::check_for_nan() 20 0.01085 0.01161 0.01285 0.38% MultiFab::contains_nan() 20 0.01082 0.01158 0.01282 0.38% FabArray::setDomainBndry() 41 0.007192 0.0104 0.01264 0.38% Castro::Castro() 1 0.01001 0.01091 0.01174 0.35% Castro::construct_old_source() 50 0.006958 0.009512 0.01012 0.30% Castro::construct_old_gravity_source() 10 0.006911 0.009447 0.01004 0.30% Castro::computeNewDt() 9 0.008502 0.008525 0.008545 0.25% Castro::initMFs() 1 0.006543 0.007177 0.007951 0.24% Castro::enforce_min_density() 62 0.005676 0.005958 0.006353 0.19% Other 199 0.01898 0.02448 0.0279 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 38 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8667 KiB 8669 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6779 KiB 6782 KiB 6784 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7138 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4574 KiB 4582 KiB 4603 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 201 KiB 220 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2815 KiB 2816 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 238 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 41 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized