Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:34 UTC on 2025-07-24. Successfully read inputs file ... Castro git describe: 25.07-12-g2c8f2fc1e AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014624779 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.341476149 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.343725883 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.330562788 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322736978 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.380777258 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.300603721 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.293048146 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29498991 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.294140926 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.318296245 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007513255 seconds Ending run at 05:17:37 UTC on 2025-07-24. Run time = 3.422520521 Run time without initialization = 3.232976303 Average number of zones advanced per microsecond: 0.811 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4166 ... 3.4205 ... 3.4228 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1470 2.2256 2.2602 66.03% Gravity::make_radial_gravity() 21 0.2959 0.2995 0.3093 9.03% check_for_negative_density() 10 0.06254 0.106 0.189 5.52% Castro::initData() 1 0.03761 0.07447 0.1126 3.29% Castro::estTimeStep() 21 0.0282 0.0732 0.1119 3.27% amrex::Copy() 193 0.07752 0.08564 0.09642 2.82% FabArray::ParallelCopy_finish() 41 0.0431 0.06503 0.08906 2.60% FabArray::setVal() 143 0.06408 0.06997 0.07384 2.16% Castro::normalize_species() 62 0.04535 0.04609 0.04772 1.39% Castro::reset_internal_energy(Fab) 1008 0.0425 0.04547 0.04695 1.37% FabArray::ParallelCopy_nowait() 41 0.03887 0.04316 0.04459 1.30% FillPatchIterator::Initialize 41 0.02784 0.03582 0.03861 1.13% StateData::FillBoundary(geom) 41 0.02942 0.03265 0.03499 1.02% Gravity::interpolate_monopole_grav() 21 0.02639 0.02737 0.02894 0.85% Castro::construct_new_gravity_source() 10 0.02271 0.02412 0.02581 0.75% Castro::initialize_do_advance() 10 0.01286 0.01752 0.01872 0.55% Castro::computeTemp() 63 0.01709 0.01817 0.01871 0.55% MultiFab::contains_nan() 20 0.01145 0.01224 0.01496 0.44% Castro::initialize_advance() 10 0.01037 0.0124 0.01459 0.43% FabArray::setDomainBndry() 41 0.007522 0.01188 0.01386 0.41% FabArray::Saxpy() 20 0.01189 0.01281 0.01374 0.40% VisMF::Write(FabArray) 2 0.009278 0.009756 0.01207 0.35% Castro::initMFs() 1 0.006442 0.007716 0.01072 0.31% Amr::writePlotFile() 2 0.007342 0.009756 0.0102 0.30% Castro::construct_old_gravity_source() 10 0.007609 0.009399 0.009965 0.29% StateData::define() 4 0.005408 0.006336 0.008562 0.25% Castro::construct_new_source() 50 0.005947 0.006149 0.006235 0.18% main() 1 0.003743 0.004192 0.004555 0.13% Gravity::get_new_grav_vector() 11 0.003191 0.003687 0.003943 0.12% Gravity::get_old_grav_vector() 10 0.001776 0.002234 0.002649 0.08% Amr::coarseTimeStep() 10 0.0009383 0.001688 0.002521 0.07% Castro::finalize_do_advance() 10 0.001246 0.00135 0.001867 0.05% AmrLevel::FillPatch() 41 0.0008143 0.0009651 0.001113 0.03% Amr::timeStep() 10 0.0001338 0.000193 0.0004315 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002761 0.0002934 0.000307 0.01% Castro::do_advance_ctu() 10 0.0001525 0.0001746 0.0001977 0.01% Castro::clean_state() 62 0.000145 0.0001649 0.000197 0.01% StateDataPhysBCFunct::() 41 0.0001027 0.000128 0.000157 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001012 0.0001143 0.0001443 0.00% FabArray::ParallelCopy() 41 8.414e-05 9.561e-05 0.0001202 0.00% Castro::do_old_sources() 10 7.585e-05 9.245e-05 0.0001088 0.00% FillPatchSingleLevel 41 7.777e-05 8.521e-05 9.744e-05 0.00% Amr::FinalizeInit() 1 3.94e-06 1.418e-05 7.972e-05 0.00% Castro::construct_old_source() 50 5.008e-05 6.765e-05 7.773e-05 0.00% Castro::do_new_sources() 10 5.633e-05 6.634e-05 7.665e-05 0.00% Castro::subcycle_advance_ctu() 10 4.194e-05 5.589e-05 7.41e-05 0.00% Castro::Castro() 1 4.497e-05 5.958e-05 7.163e-05 0.00% Castro::apply_source_to_state() 20 4.858e-05 5.682e-05 6.963e-05 0.00% Castro::construct_old_gravity() 10 3.92e-05 4.877e-05 5.9e-05 0.00% Amr::defBaseLevel() 1 3.932e-05 4.578e-05 5.704e-05 0.00% Castro::advance() 10 3.626e-05 5.029e-05 5.666e-05 0.00% Castro::construct_new_gravity() 10 3.309e-05 3.581e-05 4.541e-05 0.00% Castro::check_for_nan() 20 2.468e-05 2.982e-05 4.073e-05 0.00% Castro::expand_state() 10 2.023e-05 2.72e-05 3.495e-05 0.00% Castro::post_init() 1 1.553e-05 1.923e-05 2.47e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.844e-06 1.422e-05 2.252e-05 0.00% Castro::computeNewDt() 9 9.186e-06 1.097e-05 1.919e-05 0.00% Castro::post_timestep() 10 1.35e-05 1.663e-05 1.903e-05 0.00% Amr::InitializeInit() 1 2.661e-06 4.369e-06 9.694e-06 0.00% Castro::computeInitialDt() 2 3.495e-06 3.828e-06 4.114e-06 0.00% Amr::init() 1 1.937e-06 2.515e-06 3.661e-06 0.00% Amr::initialInit() 1 1.559e-06 1.902e-06 2.445e-06 0.00% Other 256 0.01066 0.0162 0.01978 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.417 3.42 3.423 100.00% Amr::coarseTimeStep() 10 3.221 3.221 3.221 94.10% Amr::timeStep() 10 3.205 3.205 3.206 93.67% Castro::advance() 10 3.189 3.189 3.19 93.20% Castro::subcycle_advance_ctu() 10 3.109 3.114 3.119 91.13% Castro::do_advance_ctu() 10 3.108 3.114 3.119 91.13% Castro::construct_ctu_hydro_source() 10 2.344 2.353 2.358 68.88% Gravity::make_radial_gravity() 21 0.3124 0.3162 0.3264 9.54% AmrLevel::FillPatch() 41 0.1993 0.2237 0.2369 6.92% Gravity::get_new_grav_vector() 11 0.2104 0.2117 0.2126 6.21% Castro::construct_old_gravity() 10 0.1901 0.1939 0.204 5.96% Gravity::get_old_grav_vector() 10 0.1892 0.1931 0.2034 5.94% FillPatchIterator::Initialize 41 0.1669 0.1891 0.1988 5.81% Amr::init() 1 0.184 0.1874 0.1894 5.53% check_for_negative_density() 10 0.06254 0.106 0.189 5.52% Castro::construct_new_gravity() 10 0.1852 0.1858 0.1863 5.44% Castro::initialize_do_advance() 10 0.1671 0.1778 0.1844 5.39% Amr::initialInit() 1 0.1691 0.1726 0.1745 5.10% FillPatchIterator::FillFromLevel0() 41 0.1172 0.1414 0.158 4.62% FillPatchSingleLevel 41 0.1171 0.1413 0.1578 4.61% Amr::InitializeInit() 1 0.06183 0.09953 0.1395 4.07% Amr::defBaseLevel() 1 0.06183 0.09953 0.1395 4.07% Castro::expand_state() 10 0.1119 0.1223 0.1282 3.74% FabArray::ParallelCopy() 41 0.08569 0.1084 0.1282 3.74% Castro::clean_state() 62 0.1119 0.1154 0.1191 3.48% Castro::initData() 1 0.04103 0.07817 0.1159 3.39% Castro::do_old_sources() 10 0.09482 0.1045 0.1139 3.33% Amr::FinalizeInit() 1 0.02972 0.07306 0.1119 3.27% Castro::estTimeStep() 21 0.0282 0.0732 0.1119 3.27% amrex::Copy() 193 0.07752 0.08564 0.09642 2.82% FabArray::ParallelCopy_finish() 41 0.0431 0.06503 0.08906 2.60% Castro::computeInitialDt() 2 0.002143 0.04546 0.08431 2.46% Castro::initialize_advance() 10 0.06662 0.07234 0.07751 2.26% FabArray::setVal() 143 0.06408 0.06997 0.07384 2.16% Castro::do_new_sources() 10 0.06215 0.06424 0.06715 1.96% Castro::computeTemp() 63 0.05989 0.06393 0.06595 1.93% Castro::normalize_species() 62 0.04535 0.04609 0.04772 1.39% Castro::reset_internal_energy(MultiFab) 63 0.04281 0.04576 0.04724 1.38% Castro::reset_internal_energy(Fab) 1008 0.0425 0.04547 0.04695 1.37% FabArray::ParallelCopy_nowait() 41 0.03898 0.04326 0.04467 1.31% StateDataPhysBCFunct::() 41 0.02957 0.03278 0.03511 1.03% StateData::FillBoundary(geom) 41 0.02942 0.03265 0.03499 1.02% Castro::construct_new_source() 50 0.02887 0.03027 0.03204 0.94% Gravity::interpolate_monopole_grav() 21 0.02639 0.02737 0.02894 0.85% Castro::post_init() 1 0.02669 0.02704 0.02721 0.79% Castro::construct_new_gravity_source() 10 0.02271 0.02412 0.02581 0.75% Amr::writePlotFile() 2 0.02237 0.02243 0.02253 0.66% Castro::finalize_do_advance() 10 0.01269 0.01637 0.01885 0.55% Castro::post_timestep() 10 0.01508 0.01588 0.0168 0.49% Castro::check_for_nan() 20 0.01148 0.01227 0.01499 0.44% MultiFab::contains_nan() 20 0.01145 0.01224 0.01496 0.44% Castro::Castro() 1 0.01006 0.01147 0.01483 0.43% FabArray::setDomainBndry() 41 0.007522 0.01188 0.01386 0.41% Castro::apply_source_to_state() 20 0.01194 0.01286 0.0138 0.40% FabArray::Saxpy() 20 0.01189 0.01281 0.01374 0.40% Castro::computeNewDt() 9 0.01271 0.01274 0.01275 0.37% VisMF::Write(FabArray) 2 0.009278 0.009756 0.01207 0.35% Castro::initMFs() 1 0.006442 0.007716 0.01072 0.31% Castro::construct_old_source() 50 0.007659 0.009467 0.01003 0.29% Castro::construct_old_gravity_source() 10 0.007609 0.009399 0.009965 0.29% AmrLevel::AmrLevel(dm) 1 0.005419 0.00635 0.008585 0.25% StateData::define() 4 0.005408 0.006336 0.008562 0.25% Other 256 0.0154 0.02463 0.03072 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 43 B 65 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8650 KiB 8660 KiB 8664 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6733 KiB 6743 KiB 6751 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7122 KiB 7134 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4539 KiB 4547 KiB 4552 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 219 KiB 245 KiB 256 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2792 KiB 2796 KiB 2799 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 235 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 47 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized