Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:37 UTC on 2025-07-25. Successfully read inputs file ... Castro git describe: 25.07-12-g2c8f2fc1e AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015271638 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.350128543 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.328632426 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313864761 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.338342758 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.365999148 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.304384828 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.294062655 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295104362 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.293841364 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295948677 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007636654 seconds Ending run at 05:17:41 UTC on 2025-07-25. Run time = 3.365375509 Run time without initialization = 3.192430393 Average number of zones advanced per microsecond: 0.821 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3608 ... 3.3641 ... 3.3656 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1811 2.2185 2.2463 66.74% Gravity::make_radial_gravity() 21 0.2972 0.3031 0.3169 9.41% check_for_negative_density() 10 0.05516 0.09402 0.1377 4.09% FabArray::ParallelCopy_finish() 41 0.04448 0.05757 0.1041 3.09% Castro::initData() 1 0.03714 0.07403 0.1031 3.06% Castro::estTimeStep() 21 0.0249 0.0558 0.09694 2.88% amrex::Copy() 193 0.06256 0.08168 0.09118 2.71% FabArray::setVal() 143 0.0538 0.06572 0.07253 2.15% Castro::normalize_species() 62 0.04546 0.04797 0.05129 1.52% FabArray::ParallelCopy_nowait() 41 0.03585 0.0425 0.05048 1.50% Castro::reset_internal_energy(Fab) 1008 0.04374 0.04604 0.04769 1.42% StateData::FillBoundary(geom) 41 0.0297 0.03228 0.03576 1.06% FillPatchIterator::Initialize 41 0.02725 0.03267 0.03491 1.04% Gravity::interpolate_monopole_grav() 21 0.02658 0.02704 0.02756 0.82% Castro::construct_new_gravity_source() 10 0.02303 0.0243 0.02685 0.80% Castro::computeTemp() 63 0.01759 0.01839 0.01973 0.59% Castro::initialize_do_advance() 10 0.01166 0.01683 0.01821 0.54% FabArray::Saxpy() 20 0.01035 0.01211 0.01334 0.40% Castro::initialize_advance() 10 0.005364 0.01052 0.01315 0.39% Amr::writePlotFile() 2 0.008226 0.01143 0.01315 0.39% MultiFab::contains_nan() 20 0.0104 0.01129 0.01272 0.38% FabArray::setDomainBndry() 41 0.007126 0.01064 0.01266 0.38% VisMF::Write(FabArray) 2 0.008525 0.009471 0.01248 0.37% Castro::initMFs() 1 0.006345 0.007569 0.01051 0.31% Castro::construct_old_gravity_source() 10 0.006972 0.009247 0.01011 0.30% StateData::define() 4 0.005351 0.006156 0.008248 0.25% Castro::construct_new_source() 50 0.005789 0.006055 0.006194 0.18% main() 1 0.003762 0.003905 0.004101 0.12% Gravity::get_new_grav_vector() 11 0.002709 0.0034 0.003992 0.12% Amr::coarseTimeStep() 10 0.0009579 0.002054 0.00277 0.08% Gravity::get_old_grav_vector() 10 0.001764 0.002155 0.002464 0.07% Castro::finalize_do_advance() 10 0.0006525 0.001162 0.001324 0.04% AmrLevel::FillPatch() 41 0.0007261 0.0008616 0.0009296 0.03% Amr::timeStep() 10 0.0001416 0.0001855 0.0003863 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002773 0.0002978 0.0003366 0.01% Castro::do_advance_ctu() 10 0.0001574 0.0001776 0.0002294 0.01% Castro::clean_state() 62 0.0001471 0.0001649 0.0002038 0.01% StateDataPhysBCFunct::() 41 0.0001034 0.000127 0.00017 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001042 0.0001136 0.0001331 0.00% Castro::do_old_sources() 10 8.121e-05 9.805e-05 0.0001086 0.00% FabArray::ParallelCopy() 41 8.322e-05 9.323e-05 0.0001086 0.00% Castro::construct_old_source() 50 5.421e-05 6.969e-05 9.798e-05 0.00% FillPatchSingleLevel 41 7.657e-05 8.3e-05 8.935e-05 0.00% Castro::apply_source_to_state() 20 4.412e-05 5.695e-05 8.374e-05 0.00% Castro::do_new_sources() 10 5.288e-05 6.581e-05 7.78e-05 0.00% Amr::FinalizeInit() 1 3.776e-06 1.359e-05 7.661e-05 0.00% Castro::Castro() 1 4.566e-05 6.157e-05 7.484e-05 0.00% Castro::advance() 10 4.116e-05 5.055e-05 6.777e-05 0.00% Castro::subcycle_advance_ctu() 10 4.443e-05 5.122e-05 5.695e-05 0.00% Castro::construct_old_gravity() 10 3.57e-05 4.281e-05 5.437e-05 0.00% Amr::defBaseLevel() 1 3.575e-05 4.306e-05 5.394e-05 0.00% Castro::construct_new_gravity() 10 3.03e-05 3.774e-05 5.115e-05 0.00% Castro::expand_state() 10 2.38e-05 2.751e-05 3.449e-05 0.00% Castro::check_for_nan() 20 2.299e-05 2.687e-05 3.049e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.545e-06 1.313e-05 2.259e-05 0.00% Castro::post_init() 1 1.416e-05 1.642e-05 1.914e-05 0.00% Castro::post_timestep() 10 1.267e-05 1.593e-05 1.74e-05 0.00% Castro::computeNewDt() 9 8.696e-06 9.819e-06 1.177e-05 0.00% Amr::InitializeInit() 1 2.531e-06 5.12e-06 9.431e-06 0.00% Amr::init() 1 2.089e-06 2.923e-06 6.663e-06 0.00% Castro::computeInitialDt() 2 3.23e-06 3.77e-06 4.459e-06 0.00% Amr::initialInit() 1 1.375e-06 1.805e-06 2.743e-06 0.00% Other 256 0.01055 0.01569 0.019 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.361 3.364 3.366 100.00% Amr::coarseTimeStep() 10 3.181 3.181 3.181 94.51% Amr::timeStep() 10 3.168 3.169 3.17 94.19% Castro::advance() 10 3.152 3.152 3.153 93.67% Castro::subcycle_advance_ctu() 10 3.077 3.081 3.095 91.96% Castro::do_advance_ctu() 10 3.077 3.081 3.095 91.95% Castro::construct_ctu_hydro_source() 10 2.323 2.334 2.34 69.52% Gravity::make_radial_gravity() 21 0.3144 0.3196 0.329 9.78% AmrLevel::FillPatch() 41 0.1864 0.2091 0.2298 6.83% Gravity::get_new_grav_vector() 11 0.2074 0.2088 0.2101 6.24% Castro::construct_old_gravity() 10 0.1917 0.1966 0.2062 6.13% Gravity::get_old_grav_vector() 10 0.191 0.1959 0.2054 6.10% FillPatchIterator::Initialize 41 0.157 0.1762 0.2047 6.08% Castro::construct_new_gravity() 10 0.1826 0.1838 0.1853 5.50% Amr::init() 1 0.1681 0.1714 0.1728 5.14% FillPatchIterator::FillFromLevel0() 41 0.1187 0.1329 0.1703 5.06% FillPatchSingleLevel 41 0.1186 0.1328 0.1702 5.06% Castro::initialize_do_advance() 10 0.1591 0.1645 0.1692 5.03% Amr::initialInit() 1 0.1523 0.1557 0.1573 4.67% FabArray::ParallelCopy() 41 0.08742 0.1003 0.1402 4.17% check_for_negative_density() 10 0.05516 0.09402 0.1377 4.09% Amr::InitializeInit() 1 0.06212 0.09898 0.1279 3.80% Amr::defBaseLevel() 1 0.06211 0.09898 0.1279 3.80% Castro::clean_state() 62 0.1142 0.118 0.1218 3.62% Castro::expand_state() 10 0.1054 0.1112 0.1214 3.61% Castro::do_old_sources() 10 0.09168 0.1019 0.1116 3.32% Castro::initData() 1 0.0416 0.07791 0.1067 3.17% FabArray::ParallelCopy_finish() 41 0.04448 0.05757 0.1041 3.09% Castro::estTimeStep() 21 0.0249 0.0558 0.09694 2.88% Amr::FinalizeInit() 1 0.02894 0.0567 0.09491 2.82% amrex::Copy() 193 0.06256 0.08168 0.09118 2.71% FabArray::setVal() 143 0.0538 0.06572 0.07253 2.15% Castro::initialize_advance() 10 0.05367 0.06839 0.07176 2.13% Castro::do_new_sources() 10 0.06021 0.06346 0.06869 2.04% Castro::computeInitialDt() 2 0.002224 0.02991 0.06821 2.03% Castro::computeTemp() 63 0.06161 0.06473 0.06774 2.01% Castro::normalize_species() 62 0.04546 0.04797 0.05129 1.52% FabArray::ParallelCopy_nowait() 41 0.03599 0.0426 0.05059 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04402 0.04634 0.04801 1.43% Castro::reset_internal_energy(Fab) 1008 0.04374 0.04604 0.04769 1.42% StateDataPhysBCFunct::() 41 0.02985 0.03241 0.03587 1.07% StateData::FillBoundary(geom) 41 0.0297 0.03228 0.03576 1.06% Castro::construct_new_source() 50 0.02904 0.03035 0.03304 0.98% Gravity::interpolate_monopole_grav() 21 0.02658 0.02704 0.02756 0.82% Castro::construct_new_gravity_source() 10 0.02303 0.0243 0.02685 0.80% Castro::post_init() 1 0.02614 0.02633 0.02656 0.79% Amr::writePlotFile() 2 0.02316 0.02346 0.02363 0.70% Castro::finalize_do_advance() 10 0.01279 0.01853 0.02291 0.68% Castro::post_timestep() 10 0.01562 0.01636 0.01724 0.51% Castro::Castro() 1 0.009922 0.01149 0.01461 0.43% Castro::apply_source_to_state() 20 0.0104 0.01217 0.0134 0.40% FabArray::Saxpy() 20 0.01035 0.01211 0.01334 0.40% Castro::check_for_nan() 20 0.01043 0.01132 0.01275 0.38% MultiFab::contains_nan() 20 0.0104 0.01129 0.01272 0.38% FabArray::setDomainBndry() 41 0.007126 0.01064 0.01266 0.38% VisMF::Write(FabArray) 2 0.008525 0.009471 0.01248 0.37% Castro::initMFs() 1 0.006345 0.007569 0.01051 0.31% Castro::construct_old_source() 50 0.007033 0.009317 0.01021 0.30% Castro::construct_old_gravity_source() 10 0.006972 0.009247 0.01011 0.30% Castro::computeNewDt() 9 0.008521 0.008539 0.008554 0.25% AmrLevel::AmrLevel(dm) 1 0.005361 0.00617 0.00827 0.25% StateData::define() 4 0.005351 0.006156 0.008248 0.25% Other 256 0.01521 0.02405 0.02945 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8649 KiB 8661 KiB 8666 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6769 KiB 6772 KiB 6779 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7134 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4568 KiB 4574 KiB 4595 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 208 KiB 230 KiB 252 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2809 KiB 2810 KiB 2813 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 238 KiB 242 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 43 KiB 62 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 74 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized