Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:36 UTC on 2025-07-28. Successfully read inputs file ... Castro git describe: 25.07-12-g2c8f2fc1e AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014521635 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.352306575 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.325186828 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.343853456 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.319123046 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.384068681 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.312315191 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298690083 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.301410639 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298519269 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.301599128 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007714477 seconds Ending run at 05:17:40 UTC on 2025-07-28. Run time = 3.417329069 Run time without initialization = 3.249716306 Average number of zones advanced per microsecond: 0.807 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4120 ... 3.4155 ... 3.4175 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1797 2.2273 2.2760 66.60% Gravity::make_radial_gravity() 21 0.2959 0.3059 0.3224 9.43% check_for_negative_density() 10 0.07332 0.1249 0.1754 5.13% FabArray::ParallelCopy_finish() 41 0.05223 0.07125 0.1081 3.16% Castro::initData() 1 0.03868 0.07508 0.1017 2.97% amrex::Copy() 193 0.06779 0.08326 0.09612 2.81% Castro::estTimeStep() 21 0.02214 0.05177 0.0923 2.70% FabArray::setVal() 143 0.0551 0.0657 0.07214 2.11% Castro::normalize_species() 62 0.04518 0.04587 0.04769 1.40% Castro::reset_internal_energy(Fab) 1008 0.04555 0.0465 0.04722 1.38% FabArray::ParallelCopy_nowait() 41 0.0351 0.04126 0.04309 1.26% FillPatchIterator::Initialize 41 0.02792 0.03366 0.03624 1.06% StateData::FillBoundary(geom) 41 0.0292 0.0319 0.03472 1.02% Gravity::interpolate_monopole_grav() 21 0.02652 0.0272 0.02906 0.85% Castro::construct_new_gravity_source() 10 0.02239 0.02382 0.02639 0.77% Castro::computeTemp() 63 0.01809 0.01835 0.01882 0.55% Castro::initialize_do_advance() 10 0.01143 0.01648 0.01797 0.53% Castro::initialize_advance() 10 0.005293 0.01054 0.0136 0.40% FabArray::Saxpy() 20 0.01012 0.01204 0.01316 0.38% FabArray::setDomainBndry() 41 0.007069 0.01054 0.013 0.38% MultiFab::contains_nan() 20 0.01061 0.01144 0.01253 0.37% Amr::writePlotFile() 2 0.007684 0.01028 0.01246 0.36% VisMF::Write(FabArray) 2 0.008514 0.009675 0.01211 0.35% Castro::initMFs() 1 0.006636 0.007965 0.0104 0.30% Castro::construct_old_gravity_source() 10 0.006301 0.008792 0.009568 0.28% StateData::define() 4 0.005413 0.006427 0.008519 0.25% Castro::construct_new_source() 50 0.005628 0.006014 0.00624 0.18% main() 1 0.003921 0.004191 0.004449 0.13% Gravity::get_new_grav_vector() 11 0.00318 0.003797 0.004071 0.12% Gravity::get_old_grav_vector() 10 0.001538 0.002085 0.002654 0.08% Amr::coarseTimeStep() 10 0.0007506 0.001588 0.002588 0.08% AmrLevel::FillPatch() 41 0.0007756 0.001152 0.00128 0.04% Castro::finalize_do_advance() 10 0.0005485 0.001088 0.001259 0.04% Amr::timeStep() 10 0.0001246 0.0001961 0.0004607 0.01% Castro::reset_internal_energy(MultiFab) 63 0.00027 0.0002833 0.0003047 0.01% Castro::do_advance_ctu() 10 0.0001532 0.0001687 0.0002209 0.01% Castro::clean_state() 62 0.0001307 0.0001583 0.0001806 0.01% StateDataPhysBCFunct::() 41 0.0001045 0.0001293 0.0001733 0.01% FillPatchIterator::FillFromLevel0() 41 9.839e-05 0.0001112 0.0001345 0.00% Castro::do_old_sources() 10 8.995e-05 9.852e-05 0.0001204 0.00% FabArray::ParallelCopy() 41 8.412e-05 9.645e-05 0.0001105 0.00% FillPatchSingleLevel 41 7.664e-05 8.439e-05 0.0001006 0.00% Castro::do_new_sources() 10 5.365e-05 6.328e-05 8.055e-05 0.00% Castro::construct_old_source() 50 5.451e-05 6.595e-05 7.9e-05 0.00% Castro::Castro() 1 4.113e-05 5.346e-05 7.57e-05 0.00% Amr::FinalizeInit() 1 4.196e-06 1.345e-05 6.97e-05 0.00% Castro::subcycle_advance_ctu() 10 4.136e-05 4.864e-05 6.44e-05 0.00% Amr::defBaseLevel() 1 3.739e-05 4.654e-05 6.034e-05 0.00% Castro::apply_source_to_state() 20 4.116e-05 5.037e-05 5.946e-05 0.00% Castro::advance() 10 4.049e-05 4.467e-05 5.675e-05 0.00% Castro::construct_old_gravity() 10 3.511e-05 4.159e-05 4.831e-05 0.00% Castro::construct_new_gravity() 10 3.171e-05 3.615e-05 4.368e-05 0.00% Castro::expand_state() 10 2.338e-05 2.677e-05 3.098e-05 0.00% Castro::check_for_nan() 20 2.464e-05 2.752e-05 3.049e-05 0.00% Castro::post_timestep() 10 1.27e-05 1.811e-05 2.714e-05 0.00% Castro::post_init() 1 1.526e-05 1.796e-05 2.224e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.394e-06 1.319e-05 2.209e-05 0.00% Castro::computeNewDt() 9 8.978e-06 1.039e-05 1.365e-05 0.00% Amr::InitializeInit() 1 2.648e-06 3.756e-06 6.234e-06 0.00% Amr::init() 1 2.099e-06 2.653e-06 3.946e-06 0.00% Castro::computeInitialDt() 2 2.918e-06 3.477e-06 3.842e-06 0.00% Amr::initialInit() 1 1.672e-06 1.989e-06 2.277e-06 0.00% Other 256 0.0105 0.01581 0.01909 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.412 3.416 3.417 100.00% Amr::coarseTimeStep() 10 3.238 3.238 3.238 94.74% Amr::timeStep() 10 3.225 3.226 3.227 94.43% Castro::advance() 10 3.21 3.21 3.21 93.94% Castro::subcycle_advance_ctu() 10 3.135 3.139 3.154 92.28% Castro::do_advance_ctu() 10 3.135 3.139 3.154 92.28% Castro::construct_ctu_hydro_source() 10 2.37 2.373 2.377 69.55% Gravity::make_radial_gravity() 21 0.3127 0.3227 0.3357 9.82% AmrLevel::FillPatch() 41 0.2081 0.2225 0.236 6.90% Castro::construct_old_gravity() 10 0.1976 0.2035 0.2192 6.41% Gravity::get_old_grav_vector() 10 0.197 0.2028 0.2186 6.40% Gravity::get_new_grav_vector() 11 0.2072 0.2085 0.2098 6.14% FillPatchIterator::Initialize 41 0.1739 0.1891 0.2094 6.13% Castro::construct_new_gravity() 10 0.1851 0.1861 0.1868 5.46% check_for_negative_density() 10 0.07332 0.1249 0.1754 5.13% FillPatchIterator::FillFromLevel0() 41 0.1274 0.1449 0.1745 5.10% FillPatchSingleLevel 41 0.1273 0.1448 0.1743 5.10% Castro::initialize_do_advance() 10 0.1593 0.1665 0.1705 4.99% Amr::init() 1 0.1622 0.1657 0.1674 4.90% Amr::initialInit() 1 0.1473 0.1508 0.1526 4.47% FabArray::ParallelCopy() 41 0.09505 0.1127 0.1434 4.20% Amr::InitializeInit() 1 0.06346 0.1003 0.1258 3.68% Amr::defBaseLevel() 1 0.06346 0.1003 0.1258 3.68% Castro::expand_state() 10 0.1053 0.1128 0.1217 3.56% Castro::do_old_sources() 10 0.0969 0.11 0.1189 3.48% Castro::clean_state() 62 0.1143 0.1162 0.1187 3.47% FabArray::ParallelCopy_finish() 41 0.05223 0.07125 0.1081 3.16% Castro::initData() 1 0.04234 0.0788 0.1056 3.09% amrex::Copy() 193 0.06779 0.08326 0.09612 2.81% Castro::estTimeStep() 21 0.02214 0.05177 0.0923 2.70% Amr::FinalizeInit() 1 0.02649 0.05051 0.08907 2.61% FabArray::setVal() 143 0.0551 0.0657 0.07214 2.11% Castro::initialize_advance() 10 0.05264 0.06754 0.07183 2.10% Castro::do_new_sources() 10 0.05719 0.06291 0.06901 2.02% Castro::computeTemp() 63 0.06394 0.06513 0.06602 1.93% Castro::computeInitialDt() 2 0.002169 0.02627 0.06466 1.89% Castro::normalize_species() 62 0.04518 0.04587 0.04769 1.40% Castro::reset_internal_energy(MultiFab) 63 0.04585 0.04679 0.04751 1.39% Castro::reset_internal_energy(Fab) 1008 0.04555 0.0465 0.04722 1.38% FabArray::ParallelCopy_nowait() 41 0.03523 0.04136 0.04317 1.26% StateDataPhysBCFunct::() 41 0.02932 0.03203 0.0349 1.02% StateData::FillBoundary(geom) 41 0.0292 0.0319 0.03472 1.02% Castro::construct_new_source() 50 0.02802 0.02983 0.03252 0.95% Gravity::interpolate_monopole_grav() 21 0.02652 0.0272 0.02906 0.85% Castro::construct_new_gravity_source() 10 0.02239 0.02382 0.02639 0.77% Castro::post_init() 1 0.02298 0.02369 0.02392 0.70% Castro::finalize_do_advance() 10 0.01226 0.0181 0.02321 0.68% Amr::writePlotFile() 2 0.02248 0.02263 0.02303 0.67% Castro::post_timestep() 10 0.01572 0.01605 0.01683 0.49% Castro::Castro() 1 0.009847 0.01155 0.01453 0.43% Castro::apply_source_to_state() 20 0.01017 0.01209 0.0132 0.39% FabArray::Saxpy() 20 0.01012 0.01204 0.01316 0.38% FabArray::setDomainBndry() 41 0.007069 0.01054 0.013 0.38% Castro::check_for_nan() 20 0.01064 0.01147 0.01255 0.37% MultiFab::contains_nan() 20 0.01061 0.01144 0.01253 0.37% VisMF::Write(FabArray) 2 0.008514 0.009675 0.01211 0.35% Castro::initMFs() 1 0.006636 0.007965 0.0104 0.30% Castro::construct_old_source() 50 0.006356 0.008858 0.009647 0.28% Castro::construct_old_gravity_source() 10 0.006301 0.008792 0.009568 0.28% AmrLevel::AmrLevel(dm) 1 0.005423 0.00644 0.008542 0.25% Castro::computeNewDt() 9 0.008481 0.008502 0.008523 0.25% StateData::define() 4 0.005413 0.006427 0.008519 0.25% Other 256 0.01527 0.02427 0.02981 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 47 B 127 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8651 KiB 8660 KiB 8665 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6780 KiB 6790 KiB 6797 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7124 KiB 7134 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4585 KiB 4592 KiB 4614 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 224 KiB 237 KiB 252 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2814 KiB 2819 KiB 2822 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 240 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 47 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 74 KiB 76 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized