Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:33 UTC on 2025-07-29. Successfully read inputs file ... Castro git describe: 25.07-12-g2c8f2fc1e AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014755346 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.350864541 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.354884628 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.329589491 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.343923305 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.355842153 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.296060994 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.293494143 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.294508996 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.294326613 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.311211887 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00863447 seconds Ending run at 05:17:36 UTC on 2025-07-29. Run time = 3.441003587 Run time without initialization = 3.239344377 Average number of zones advanced per microsecond: 0.809 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4328 ... 3.4391 ... 3.4423 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1577 2.1978 2.2504 65.37% Gravity::make_radial_gravity() 21 0.3115 0.3164 0.3253 9.45% check_for_negative_density() 10 0.05535 0.1103 0.152 4.42% Castro::estTimeStep() 21 0.03233 0.09285 0.1412 4.10% Castro::initData() 1 0.03766 0.07599 0.1223 3.55% FabArray::ParallelCopy_finish() 41 0.04615 0.07155 0.09085 2.64% amrex::Copy() 193 0.07549 0.07903 0.08608 2.50% FabArray::setVal() 143 0.06337 0.07189 0.08343 2.42% Castro::reset_internal_energy(Fab) 1008 0.04234 0.04517 0.04802 1.39% Castro::normalize_species() 62 0.04561 0.04699 0.04765 1.38% FabArray::ParallelCopy_nowait() 41 0.03824 0.04196 0.0463 1.34% FillPatchIterator::Initialize 41 0.02877 0.0346 0.03744 1.09% StateData::FillBoundary(geom) 41 0.02916 0.03154 0.03349 0.97% Gravity::interpolate_monopole_grav() 21 0.02646 0.0277 0.03344 0.97% Castro::construct_new_gravity_source() 10 0.02348 0.02635 0.02907 0.84% Castro::initialize_do_advance() 10 0.01258 0.01811 0.02093 0.61% Castro::computeTemp() 63 0.01679 0.01805 0.01864 0.54% MultiFab::contains_nan() 20 0.01006 0.01161 0.01488 0.43% FabArray::Saxpy() 20 0.0123 0.013 0.01355 0.39% Castro::initialize_advance() 10 0.009787 0.0115 0.01355 0.39% VisMF::Write(FabArray) 2 0.009363 0.01009 0.01341 0.39% FabArray::setDomainBndry() 41 0.006933 0.01068 0.01288 0.37% Amr::writePlotFile() 2 0.007323 0.01064 0.01148 0.33% Castro::initMFs() 1 0.006496 0.00784 0.01052 0.31% Castro::construct_old_gravity_source() 10 0.007715 0.009352 0.00987 0.29% StateData::define() 4 0.005384 0.006709 0.009599 0.28% Castro::construct_new_source() 50 0.005765 0.005947 0.006246 0.18% main() 1 0.003214 0.004632 0.005429 0.16% Amr::coarseTimeStep() 10 0.002235 0.003074 0.004263 0.12% Gravity::get_new_grav_vector() 11 0.00293 0.003461 0.003855 0.11% Gravity::get_old_grav_vector() 10 0.001667 0.002077 0.00257 0.07% Castro::finalize_do_advance() 10 0.0005766 0.00121 0.001601 0.05% AmrLevel::FillPatch() 41 0.0008812 0.0009823 0.001109 0.03% Amr::timeStep() 10 0.0001274 0.0001836 0.0004211 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002715 0.0002859 0.0003258 0.01% Castro::do_advance_ctu() 10 0.0001443 0.0001664 0.0001902 0.01% Castro::clean_state() 62 0.0001449 0.0001573 0.000174 0.01% StateDataPhysBCFunct::() 41 0.0001139 0.0001344 0.0001674 0.00% FillPatchIterator::FillFromLevel0() 41 0.000107 0.0001184 0.0001332 0.00% FabArray::ParallelCopy() 41 8.498e-05 9.767e-05 0.0001091 0.00% Castro::do_old_sources() 10 7.383e-05 9.198e-05 0.0001037 0.00% FillPatchSingleLevel 41 7.565e-05 8.397e-05 9.33e-05 0.00% Amr::FinalizeInit() 1 3.571e-06 1.55e-05 9.153e-05 0.00% Castro::construct_old_source() 50 5.304e-05 7.007e-05 8.405e-05 0.00% Castro::Castro() 1 4.042e-05 5.247e-05 7.178e-05 0.00% Castro::do_new_sources() 10 5.944e-05 6.562e-05 7.086e-05 0.00% Castro::subcycle_advance_ctu() 10 4.16e-05 5.113e-05 6.789e-05 0.00% Castro::apply_source_to_state() 20 4.47e-05 5.374e-05 6.78e-05 0.00% Amr::defBaseLevel() 1 3.878e-05 4.719e-05 6.693e-05 0.00% Castro::advance() 10 4.117e-05 4.832e-05 6.597e-05 0.00% Castro::construct_old_gravity() 10 3.212e-05 3.928e-05 4.873e-05 0.00% Castro::construct_new_gravity() 10 2.896e-05 3.418e-05 3.996e-05 0.00% Castro::expand_state() 10 2.45e-05 2.772e-05 3.704e-05 0.00% Castro::check_for_nan() 20 2.341e-05 2.666e-05 3.191e-05 0.00% Castro::post_init() 1 1.438e-05 2.037e-05 3.149e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.579e-06 1.44e-05 2.504e-05 0.00% Castro::post_timestep() 10 1.647e-05 1.955e-05 2.245e-05 0.00% Amr::init() 1 1.735e-06 3.813e-06 1.219e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.819e-06 5.672e-06 1.176e-05 0.00% Castro::computeNewDt() 9 9.431e-06 1.001e-05 1.112e-05 0.00% Amr::InitializeInit() 1 2.607e-06 3.821e-06 5.668e-06 0.00% Castro::computeInitialDt() 2 3.572e-06 3.753e-06 4.062e-06 0.00% Amr::initialInit() 1 1.48e-06 1.973e-06 3.151e-06 0.00% Other 255 0.01072 0.01798 0.02217 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.433 3.439 3.442 100.00% Amr::coarseTimeStep() 10 3.225 3.225 3.225 93.70% Amr::timeStep() 10 3.211 3.213 3.213 93.35% Castro::advance() 10 3.195 3.196 3.197 92.89% Castro::subcycle_advance_ctu() 10 3.111 3.119 3.126 90.80% Castro::do_advance_ctu() 10 3.111 3.119 3.126 90.80% Castro::construct_ctu_hydro_source() 10 2.327 2.329 2.331 67.72% Gravity::make_radial_gravity() 21 0.3282 0.3326 0.3401 9.88% Gravity::get_new_grav_vector() 11 0.2295 0.2325 0.2362 6.86% AmrLevel::FillPatch() 41 0.2062 0.2232 0.236 6.85% Castro::construct_new_gravity() 10 0.2042 0.2066 0.2104 6.11% FillPatchIterator::Initialize 41 0.1718 0.1909 0.2027 5.89% Amr::init() 1 0.1949 0.2001 0.2027 5.89% Castro::construct_old_gravity() 10 0.191 0.1949 0.2016 5.86% Gravity::get_old_grav_vector() 10 0.1901 0.194 0.2006 5.83% Amr::initialInit() 1 0.1799 0.1851 0.1876 5.45% Castro::initialize_do_advance() 10 0.1649 0.1768 0.1837 5.34% FillPatchIterator::FillFromLevel0() 41 0.1222 0.1456 0.1589 4.62% FillPatchSingleLevel 41 0.1221 0.1455 0.1587 4.61% check_for_negative_density() 10 0.05535 0.1103 0.152 4.42% Amr::InitializeInit() 1 0.06472 0.1032 0.1503 4.36% Amr::defBaseLevel() 1 0.06471 0.1032 0.1503 4.36% Castro::estTimeStep() 21 0.03233 0.09285 0.1412 4.10% Castro::expand_state() 10 0.1098 0.1218 0.1311 3.81% FabArray::ParallelCopy() 41 0.08857 0.1137 0.1293 3.76% Castro::initData() 1 0.04113 0.07967 0.1259 3.66% Amr::FinalizeInit() 1 0.02962 0.08192 0.1223 3.55% Castro::clean_state() 62 0.1123 0.1157 0.119 3.46% Castro::do_old_sources() 10 0.0932 0.09606 0.09847 2.86% Castro::computeInitialDt() 2 0.002152 0.05447 0.09479 2.75% FabArray::ParallelCopy_finish() 41 0.04615 0.07155 0.09085 2.64% amrex::Copy() 193 0.07549 0.07903 0.08608 2.50% FabArray::setVal() 143 0.06337 0.07189 0.08343 2.42% Castro::initialize_advance() 10 0.06716 0.07373 0.08156 2.37% Castro::do_new_sources() 10 0.06208 0.06864 0.07728 2.24% Castro::computeTemp() 63 0.05977 0.06351 0.06699 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04261 0.04546 0.04834 1.40% Castro::reset_internal_energy(Fab) 1008 0.04234 0.04517 0.04802 1.39% Castro::normalize_species() 62 0.04561 0.04699 0.04765 1.38% FabArray::ParallelCopy_nowait() 41 0.03835 0.04206 0.04639 1.35% Castro::finalize_do_advance() 10 0.02181 0.03102 0.03904 1.13% Castro::construct_new_source() 50 0.02948 0.0323 0.03492 1.01% StateDataPhysBCFunct::() 41 0.02933 0.03167 0.0336 0.98% StateData::FillBoundary(geom) 41 0.02916 0.03154 0.03349 0.97% Gravity::interpolate_monopole_grav() 21 0.02646 0.0277 0.03344 0.97% Castro::construct_new_gravity_source() 10 0.02348 0.02635 0.02907 0.84% Castro::post_init() 1 0.02664 0.02687 0.02697 0.78% Amr::writePlotFile() 2 0.02367 0.02375 0.02393 0.70% Castro::post_timestep() 10 0.01474 0.01588 0.01704 0.49% Castro::Castro() 1 0.009696 0.01146 0.0151 0.44% Castro::check_for_nan() 20 0.01009 0.01164 0.01491 0.43% MultiFab::contains_nan() 20 0.01006 0.01161 0.01488 0.43% Castro::apply_source_to_state() 20 0.01237 0.01306 0.01361 0.40% FabArray::Saxpy() 20 0.0123 0.013 0.01355 0.39% VisMF::Write(FabArray) 2 0.009363 0.01009 0.01341 0.39% FabArray::setDomainBndry() 41 0.006933 0.01068 0.01288 0.37% Castro::initMFs() 1 0.006496 0.00784 0.01052 0.31% Castro::construct_old_source() 50 0.007769 0.009422 0.009954 0.29% Castro::construct_old_gravity_source() 10 0.007715 0.009352 0.00987 0.29% AmrLevel::AmrLevel(dm) 1 0.005396 0.006724 0.009622 0.28% StateData::define() 4 0.005384 0.006709 0.009599 0.28% Castro::computeNewDt() 9 0.008586 0.008595 0.008608 0.25% DistributionMapping::SFCProcessorMapDoIt() 1 4.717e-05 0.005282 0.007818 0.23% Other 255 0.01537 0.02327 0.0285 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 41 B 55 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8643 KiB 8652 KiB 8655 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6706 KiB 6717 KiB 6728 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7116 KiB 7128 KiB 7138 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4518 KiB 4530 KiB 4542 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 222 KiB 239 KiB 254 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2782 KiB 2787 KiB 2792 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 243 KiB 246 KiB 252 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 48 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2023 KiB 2025 KiB 2027 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 85 KiB 86 KiB 88 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized