Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:34 UTC on 2025-07-30. Successfully read inputs file ... Castro git describe: 25.07-12-g2c8f2fc1e AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014702272 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.360428406 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.341129351 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.311441851 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.311136091 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.365972762 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306142334 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296500633 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297755963 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298111731 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.29844049 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00761952 seconds Ending run at 05:17:37 UTC on 2025-07-30. Run time = 3.368386194 Run time without initialization = 3.199691865 Average number of zones advanced per microsecond: 0.819 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3666 ... 3.3680 ... 3.3685 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1971 2.2264 2.2550 66.94% Gravity::make_radial_gravity() 21 0.2938 0.2994 0.3138 9.32% check_for_negative_density() 10 0.0659 0.09767 0.13 3.86% Castro::initData() 1 0.03725 0.07073 0.1041 3.09% FabArray::ParallelCopy_finish() 41 0.0434 0.06154 0.1008 2.99% Castro::estTimeStep() 21 0.02608 0.06118 0.09763 2.90% amrex::Copy() 193 0.06311 0.078 0.08717 2.59% FabArray::setVal() 143 0.05441 0.06635 0.07138 2.12% FabArray::ParallelCopy_nowait() 41 0.03538 0.04322 0.04901 1.46% Castro::reset_internal_energy(Fab) 1008 0.04328 0.04612 0.04747 1.41% Castro::normalize_species() 62 0.04485 0.04563 0.04708 1.40% FillPatchIterator::Initialize 41 0.02744 0.03343 0.04332 1.29% StateData::FillBoundary(geom) 41 0.02902 0.03116 0.03301 0.98% Gravity::interpolate_monopole_grav() 21 0.02664 0.02699 0.02767 0.82% Castro::construct_new_gravity_source() 10 0.02314 0.02452 0.02636 0.78% Castro::computeTemp() 63 0.01756 0.01815 0.01909 0.57% Castro::initialize_do_advance() 10 0.01148 0.0161 0.01748 0.52% FabArray::Saxpy() 20 0.01084 0.01252 0.01379 0.41% Castro::initialize_advance() 10 0.005191 0.01061 0.01347 0.40% Amr::writePlotFile() 2 0.007614 0.01038 0.01304 0.39% FabArray::setDomainBndry() 41 0.006681 0.009984 0.0127 0.38% VisMF::Write(FabArray) 2 0.008442 0.009795 0.0123 0.37% MultiFab::contains_nan() 20 0.01068 0.01124 0.01224 0.36% Castro::construct_old_gravity_source() 10 0.00702 0.009425 0.01001 0.30% Castro::initMFs() 1 0.006598 0.006813 0.007466 0.22% Castro::construct_new_source() 50 0.005787 0.00608 0.006351 0.19% main() 1 0.003698 0.004254 0.004416 0.13% Gravity::get_new_grav_vector() 11 0.002818 0.00355 0.004121 0.12% Amr::coarseTimeStep() 10 0.0009031 0.00191 0.002355 0.07% Gravity::get_old_grav_vector() 10 0.001648 0.001982 0.002312 0.07% Castro::finalize_do_advance() 10 0.0005389 0.00128 0.00187 0.06% AmrLevel::FillPatch() 41 0.0007441 0.001043 0.001237 0.04% Amr::timeStep() 10 0.0001402 0.0001909 0.0003936 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002694 0.0002839 0.0003007 0.01% Castro::do_advance_ctu() 10 0.0001496 0.0001672 0.0001853 0.01% Castro::clean_state() 62 0.0001483 0.0001554 0.0001628 0.00% StateDataPhysBCFunct::() 41 0.0001014 0.0001166 0.0001465 0.00% FillPatchIterator::FillFromLevel0() 41 8.737e-05 0.0001043 0.0001215 0.00% Castro::do_old_sources() 10 7.687e-05 9.605e-05 0.0001142 0.00% FabArray::ParallelCopy() 41 7.969e-05 9.439e-05 0.0001069 0.00% Castro::Castro() 1 4.817e-05 7.946e-05 9.894e-05 0.00% Castro::construct_old_source() 50 5.358e-05 7.176e-05 9.701e-05 0.00% FillPatchSingleLevel 41 7.288e-05 8.089e-05 8.84e-05 0.00% Amr::FinalizeInit() 1 3.475e-06 1.316e-05 7.432e-05 0.00% Castro::apply_source_to_state() 20 3.794e-05 5.422e-05 7.245e-05 0.00% Castro::do_new_sources() 10 5.414e-05 6.181e-05 6.647e-05 0.00% Castro::subcycle_advance_ctu() 10 4.212e-05 4.778e-05 5.287e-05 0.00% Castro::construct_old_gravity() 10 3.77e-05 4.32e-05 5.19e-05 0.00% Castro::advance() 10 3.619e-05 4.565e-05 5.021e-05 0.00% Amr::defBaseLevel() 1 3.605e-05 3.956e-05 4.444e-05 0.00% Castro::construct_new_gravity() 10 3.049e-05 3.662e-05 4.112e-05 0.00% Castro::expand_state() 10 2.079e-05 2.494e-05 2.815e-05 0.00% Castro::check_for_nan() 20 2.343e-05 2.597e-05 2.742e-05 0.00% Castro::post_timestep() 10 1.468e-05 1.691e-05 1.951e-05 0.00% Castro::post_init() 1 1.394e-05 1.616e-05 1.846e-05 0.00% Castro::computeNewDt() 9 8.155e-06 9.884e-06 1.117e-05 0.00% Amr::InitializeInit() 1 2.654e-06 3.386e-06 5.578e-06 0.00% Castro::computeInitialDt() 2 3.017e-06 3.56e-06 4.071e-06 0.00% Amr::init() 1 2.051e-06 2.464e-06 3.206e-06 0.00% Amr::initialInit() 1 1.355e-06 1.837e-06 2.45e-06 0.00% Other 261 0.01572 0.01854 0.02056 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.367 3.368 3.369 100.00% Amr::coarseTimeStep() 10 3.188 3.188 3.188 94.63% Amr::timeStep() 10 3.176 3.176 3.177 94.32% Castro::advance() 10 3.16 3.16 3.161 93.84% Castro::subcycle_advance_ctu() 10 3.085 3.089 3.103 92.12% Castro::do_advance_ctu() 10 3.085 3.089 3.103 92.12% Castro::construct_ctu_hydro_source() 10 2.341 2.345 2.35 69.76% Gravity::make_radial_gravity() 21 0.3106 0.3155 0.3268 9.70% AmrLevel::FillPatch() 41 0.1941 0.2118 0.2256 6.70% Gravity::get_new_grav_vector() 11 0.2095 0.2107 0.2118 6.29% FillPatchIterator::Initialize 41 0.1647 0.1798 0.201 5.97% Castro::construct_old_gravity() 10 0.185 0.1902 0.2008 5.96% Gravity::get_old_grav_vector() 10 0.1843 0.1895 0.2002 5.94% Castro::construct_new_gravity() 10 0.1874 0.1881 0.1887 5.60% Amr::init() 1 0.1672 0.168 0.1684 5.00% FillPatchIterator::FillFromLevel0() 41 0.1194 0.1364 0.1669 4.95% FillPatchSingleLevel 41 0.1192 0.1363 0.1668 4.95% Castro::initialize_do_advance() 10 0.1549 0.162 0.1665 4.94% Amr::initialInit() 1 0.1518 0.153 0.1535 4.56% FabArray::ParallelCopy() 41 0.08767 0.105 0.1364 4.05% check_for_negative_density() 10 0.0659 0.09767 0.13 3.86% Amr::InitializeInit() 1 0.05889 0.09247 0.1257 3.73% Amr::defBaseLevel() 1 0.05888 0.09246 0.1257 3.73% Castro::clean_state() 62 0.1129 0.1154 0.1195 3.55% Castro::expand_state() 10 0.1 0.1092 0.119 3.53% Castro::do_old_sources() 10 0.1001 0.1058 0.1107 3.29% Castro::initData() 1 0.04143 0.07467 0.1076 3.20% FabArray::ParallelCopy_finish() 41 0.0434 0.06154 0.1008 2.99% Castro::estTimeStep() 21 0.02608 0.06118 0.09763 2.90% Amr::FinalizeInit() 1 0.02609 0.06054 0.09443 2.80% amrex::Copy() 193 0.06311 0.078 0.08717 2.59% Castro::initialize_advance() 10 0.05335 0.06811 0.07205 2.14% FabArray::setVal() 143 0.05441 0.06635 0.07138 2.12% Castro::computeInitialDt() 2 0.00214 0.03614 0.07002 2.08% Castro::do_new_sources() 10 0.06057 0.06383 0.0697 2.07% Castro::computeTemp() 63 0.06112 0.06455 0.06686 1.98% FabArray::ParallelCopy_nowait() 41 0.0355 0.04332 0.04911 1.46% Castro::reset_internal_energy(MultiFab) 63 0.04357 0.0464 0.04777 1.42% Castro::reset_internal_energy(Fab) 1008 0.04328 0.04612 0.04747 1.41% Castro::normalize_species() 62 0.04485 0.04563 0.04708 1.40% StateDataPhysBCFunct::() 41 0.02913 0.03128 0.03313 0.98% StateData::FillBoundary(geom) 41 0.02902 0.03116 0.03301 0.98% Castro::construct_new_source() 50 0.02908 0.0306 0.03267 0.97% Gravity::interpolate_monopole_grav() 21 0.02664 0.02699 0.02767 0.82% Castro::construct_new_gravity_source() 10 0.02314 0.02452 0.02636 0.78% Castro::post_init() 1 0.0236 0.02387 0.02399 0.71% Amr::writePlotFile() 2 0.02258 0.02271 0.02315 0.69% Castro::finalize_do_advance() 10 0.01187 0.01773 0.02082 0.62% Castro::post_timestep() 10 0.0151 0.01563 0.01617 0.48% Castro::apply_source_to_state() 20 0.01087 0.01257 0.01385 0.41% FabArray::Saxpy() 20 0.01084 0.01252 0.01379 0.41% FabArray::setDomainBndry() 41 0.006681 0.009984 0.0127 0.38% VisMF::Write(FabArray) 2 0.008442 0.009795 0.0123 0.37% Castro::check_for_nan() 20 0.0107 0.01126 0.01227 0.36% MultiFab::contains_nan() 20 0.01068 0.01124 0.01224 0.36% Castro::Castro() 1 0.01071 0.01116 0.0118 0.35% Castro::construct_old_source() 50 0.007074 0.009496 0.01007 0.30% Castro::construct_old_gravity_source() 10 0.00702 0.009425 0.01001 0.30% Castro::computeNewDt() 9 0.008588 0.008602 0.008611 0.26% Castro::initMFs() 1 0.006598 0.006813 0.007466 0.22% Other 261 0.02567 0.02997 0.03314 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 35 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6772 KiB 6780 KiB 6784 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4572 KiB 4581 KiB 4605 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 211 KiB 231 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2811 KiB 2814 KiB 2816 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 238 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 45 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized