Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:32 UTC on 2025-07-31. Successfully read inputs file ... Castro git describe: 25.07-12-g2c8f2fc1e AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014333878 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.353125109 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.346344839 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.322656766 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320756205 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.37424193 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307193338 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296392362 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295895037 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296661834 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295794851 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007490247 seconds Ending run at 05:17:35 UTC on 2025-07-31. Run time = 3.388673031 Run time without initialization = 3.222009846 Average number of zones advanced per microsecond: 0.814 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3861 ... 3.3877 ... 3.3889 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1642 2.2197 2.2705 67.00% Gravity::make_radial_gravity() 21 0.2953 0.3008 0.3073 9.07% check_for_negative_density() 10 0.04489 0.09595 0.1498 4.42% Castro::initData() 1 0.03816 0.07208 0.1019 3.01% amrex::Copy() 193 0.08025 0.08875 0.1002 2.96% Castro::estTimeStep() 21 0.02639 0.05884 0.09498 2.80% FabArray::setVal() 143 0.06862 0.07289 0.0773 2.28% FabArray::ParallelCopy_finish() 41 0.04055 0.05544 0.06936 2.05% Castro::normalize_species() 62 0.04528 0.0512 0.05804 1.71% Castro::reset_internal_energy(Fab) 1008 0.04398 0.04683 0.04881 1.44% FabArray::ParallelCopy_nowait() 41 0.04096 0.0431 0.0449 1.32% FillPatchIterator::Initialize 41 0.0295 0.03419 0.03713 1.10% StateData::FillBoundary(geom) 41 0.03048 0.03191 0.03404 1.00% Gravity::interpolate_monopole_grav() 21 0.0268 0.02773 0.02942 0.87% Castro::construct_new_gravity_source() 10 0.02351 0.02463 0.02658 0.78% Castro::computeTemp() 63 0.01817 0.01871 0.01919 0.57% Castro::initialize_do_advance() 10 0.01671 0.01794 0.01865 0.55% Castro::initialize_advance() 10 0.01104 0.0129 0.01501 0.44% FabArray::Saxpy() 20 0.01168 0.01286 0.01356 0.40% FabArray::setDomainBndry() 41 0.009718 0.01078 0.0128 0.38% MultiFab::contains_nan() 20 0.01034 0.01161 0.01254 0.37% VisMF::Write(FabArray) 2 0.009145 0.009558 0.01186 0.35% Amr::writePlotFile() 2 0.007217 0.009493 0.01 0.30% Castro::construct_old_gravity_source() 10 0.009098 0.009664 0.01 0.30% Castro::initMFs() 1 0.006423 0.006961 0.007794 0.23% Castro::construct_new_source() 50 0.006293 0.006515 0.006659 0.20% Castro::enforce_min_density() 62 0.005936 0.006153 0.006558 0.19% main() 1 0.003529 0.004358 0.004812 0.14% Amr::coarseTimeStep() 10 0.001614 0.003353 0.004419 0.13% Gravity::get_new_grav_vector() 11 0.002921 0.003462 0.003921 0.12% Gravity::get_old_grav_vector() 10 0.001717 0.002215 0.002692 0.08% Castro::finalize_do_advance() 10 0.00125 0.001317 0.001355 0.04% AmrLevel::FillPatch() 41 0.0008526 0.0009143 0.0009697 0.03% Amr::timeStep() 10 0.0001408 0.0002069 0.0005209 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002751 0.0002903 0.000312 0.01% Castro::do_advance_ctu() 10 0.0001506 0.0001799 0.0002131 0.01% Castro::clean_state() 62 0.0001523 0.0001717 0.0001976 0.01% StateDataPhysBCFunct::() 41 0.0001074 0.0001233 0.00014 0.00% Castro::do_old_sources() 10 7.791e-05 0.0001012 0.000127 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001064 0.0001145 0.0001269 0.00% FabArray::ParallelCopy() 41 8.783e-05 9.618e-05 0.0001057 0.00% Amr::FinalizeInit() 1 3.801e-06 1.558e-05 9.028e-05 0.00% FillPatchSingleLevel 41 8.302e-05 8.641e-05 9.019e-05 0.00% Castro::construct_old_source() 50 6.047e-05 7.094e-05 8.562e-05 0.00% Castro::Castro() 1 4.34e-05 5.403e-05 7.722e-05 0.00% Castro::do_new_sources() 10 5.297e-05 6.684e-05 7.519e-05 0.00% Castro::subcycle_advance_ctu() 10 4.245e-05 5.348e-05 6.795e-05 0.00% Castro::apply_source_to_state() 20 4.563e-05 5.536e-05 6.439e-05 0.00% Castro::advance() 10 4.26e-05 4.96e-05 5.956e-05 0.00% Castro::construct_old_gravity() 10 3.892e-05 4.252e-05 5.296e-05 0.00% Amr::defBaseLevel() 1 3.568e-05 3.968e-05 4.512e-05 0.00% Castro::construct_new_gravity() 10 3.211e-05 3.679e-05 4.43e-05 0.00% Castro::check_for_nan() 20 2.441e-05 2.909e-05 3.993e-05 0.00% Castro::expand_state() 10 2.186e-05 2.619e-05 3.252e-05 0.00% Castro::post_init() 1 1.466e-05 1.821e-05 2.507e-05 0.00% Castro::post_timestep() 10 1.485e-05 1.694e-05 2.058e-05 0.00% Castro::computeNewDt() 9 8.682e-06 1.043e-05 1.363e-05 0.00% Amr::InitializeInit() 1 2.722e-06 3.299e-06 6.064e-06 0.00% Castro::computeInitialDt() 2 2.848e-06 3.542e-06 4.27e-06 0.00% Amr::init() 1 1.891e-06 2.386e-06 3.267e-06 0.00% Amr::initialInit() 1 1.67e-06 2.055e-06 2.483e-06 0.00% Other 199 0.01032 0.01287 0.01467 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.386 3.388 3.389 100.00% Amr::coarseTimeStep() 10 3.21 3.21 3.21 94.71% Amr::timeStep() 10 3.195 3.197 3.198 94.37% Castro::advance() 10 3.179 3.179 3.179 93.82% Castro::subcycle_advance_ctu() 10 3.098 3.1 3.103 91.55% Castro::do_advance_ctu() 10 3.098 3.099 3.102 91.55% Castro::construct_ctu_hydro_source() 10 2.336 2.338 2.341 69.07% Gravity::make_radial_gravity() 21 0.3136 0.3184 0.3239 9.56% AmrLevel::FillPatch() 41 0.1969 0.2108 0.2247 6.63% Gravity::get_new_grav_vector() 11 0.2117 0.2131 0.2149 6.34% Castro::construct_old_gravity() 10 0.1909 0.1943 0.1994 5.88% Gravity::get_old_grav_vector() 10 0.1901 0.1936 0.1987 5.86% Castro::construct_new_gravity() 10 0.189 0.1901 0.1914 5.65% FillPatchIterator::Initialize 41 0.1646 0.176 0.1886 5.57% Castro::initialize_do_advance() 10 0.1631 0.168 0.1717 5.07% Amr::init() 1 0.165 0.1657 0.1664 4.91% Amr::initialInit() 1 0.1505 0.1512 0.1519 4.48% check_for_negative_density() 10 0.04489 0.09595 0.1498 4.42% FillPatchIterator::FillFromLevel0() 41 0.1172 0.131 0.1437 4.24% FillPatchSingleLevel 41 0.1171 0.1309 0.1436 4.24% Castro::clean_state() 62 0.1151 0.1224 0.1294 3.82% Amr::InitializeInit() 1 0.05968 0.09334 0.1238 3.65% Amr::defBaseLevel() 1 0.05967 0.09334 0.1238 3.65% Castro::expand_state() 10 0.1074 0.1123 0.1155 3.41% FabArray::ParallelCopy() 41 0.08567 0.09874 0.1115 3.29% Castro::do_old_sources() 10 0.09707 0.1037 0.1092 3.22% Castro::initData() 1 0.04158 0.0761 0.1057 3.12% amrex::Copy() 193 0.08025 0.08875 0.1002 2.96% Castro::estTimeStep() 21 0.02639 0.05884 0.09498 2.80% Amr::FinalizeInit() 1 0.02709 0.05787 0.09149 2.70% Castro::initialize_advance() 10 0.07332 0.0763 0.07793 2.30% FabArray::setVal() 143 0.06862 0.07289 0.0773 2.28% Castro::do_new_sources() 10 0.06336 0.06666 0.0711 2.10% FabArray::ParallelCopy_finish() 41 0.04055 0.05544 0.06936 2.05% Castro::computeTemp() 63 0.06242 0.06583 0.06775 2.00% Castro::computeInitialDt() 2 0.002259 0.03304 0.06661 1.97% Castro::normalize_species() 62 0.04528 0.0512 0.05804 1.71% Castro::reset_internal_energy(MultiFab) 63 0.04425 0.04712 0.04909 1.45% Castro::reset_internal_energy(Fab) 1008 0.04398 0.04683 0.04881 1.44% FabArray::ParallelCopy_nowait() 41 0.04107 0.04321 0.04502 1.33% StateDataPhysBCFunct::() 41 0.0306 0.03204 0.03416 1.01% StateData::FillBoundary(geom) 41 0.03048 0.03191 0.03404 1.00% Castro::construct_new_source() 50 0.03001 0.03114 0.03318 0.98% Gravity::interpolate_monopole_grav() 21 0.0268 0.02773 0.02942 0.87% Castro::construct_new_gravity_source() 10 0.02351 0.02463 0.02658 0.78% Castro::post_init() 1 0.02394 0.02426 0.02454 0.72% Amr::writePlotFile() 2 0.02202 0.0221 0.02221 0.66% Castro::finalize_do_advance() 10 0.01396 0.01835 0.02199 0.65% Castro::post_timestep() 10 0.01589 0.01703 0.01867 0.55% Castro::apply_source_to_state() 20 0.01173 0.01291 0.01362 0.40% FabArray::Saxpy() 20 0.01168 0.01286 0.01356 0.40% FabArray::setDomainBndry() 41 0.009718 0.01078 0.0128 0.38% Castro::check_for_nan() 20 0.01037 0.01164 0.01257 0.37% MultiFab::contains_nan() 20 0.01034 0.01161 0.01254 0.37% VisMF::Write(FabArray) 2 0.009145 0.009558 0.01186 0.35% Castro::Castro() 1 0.01026 0.01078 0.01154 0.34% Castro::construct_old_source() 50 0.009159 0.009735 0.01009 0.30% Castro::construct_old_gravity_source() 10 0.009098 0.009664 0.01 0.30% Castro::computeNewDt() 9 0.008739 0.008783 0.008804 0.26% Castro::initMFs() 1 0.006423 0.006961 0.007794 0.23% Castro::enforce_min_density() 62 0.005936 0.006153 0.006558 0.19% Other 199 0.02032 0.02441 0.02782 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 38 B 56 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6777 KiB 6784 KiB 6786 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4563 KiB 4570 KiB 4574 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 216 KiB 230 KiB 243 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2810 KiB 2814 KiB 2815 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 239 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 42 KiB 46 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 73 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized