Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 05:17:21 UTC on 2025-08-01. Successfully read inputs file ... Castro git describe: 25.07-12-g2c8f2fc1e AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015820668 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.356160816 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.349463503 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.323237006 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.334792502 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.378577321 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.299916822 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296016457 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.293967166 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.294628668 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295692816 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007470801 seconds Ending run at 05:17:25 UTC on 2025-08-01. Run time = 3.430924448 Run time without initialization = 3.235237447 Average number of zones advanced per microsecond: 0.810 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4255 ... 3.4291 ... 3.4309 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1809 2.2074 2.2599 65.87% Gravity::make_radial_gravity() 21 0.3009 0.3202 0.3328 9.70% check_for_negative_density() 10 0.0392 0.09392 0.1233 3.59% Castro::initData() 1 0.03698 0.07423 0.1175 3.42% Castro::estTimeStep() 21 0.02885 0.07708 0.1166 3.40% amrex::Copy() 193 0.07793 0.08205 0.09267 2.70% FabArray::ParallelCopy_finish() 41 0.05083 0.07741 0.08788 2.56% FabArray::setVal() 143 0.0637 0.07212 0.08431 2.46% Castro::normalize_species() 62 0.04498 0.04749 0.05344 1.56% Castro::reset_internal_energy(Fab) 1008 0.04417 0.04679 0.05 1.46% FabArray::ParallelCopy_nowait() 41 0.03824 0.0417 0.04277 1.25% FillPatchIterator::Initialize 41 0.02842 0.03415 0.03888 1.13% StateData::FillBoundary(geom) 41 0.02968 0.03221 0.03531 1.03% Gravity::interpolate_monopole_grav() 21 0.02632 0.02726 0.02997 0.87% Castro::construct_new_gravity_source() 10 0.02306 0.02427 0.02535 0.74% Castro::initialize_do_advance() 10 0.01261 0.01737 0.02308 0.67% Castro::computeTemp() 63 0.01757 0.01829 0.0199 0.58% MultiFab::contains_nan() 20 0.01053 0.01195 0.01498 0.44% Castro::initialize_advance() 10 0.01 0.01189 0.01395 0.41% FabArray::Saxpy() 20 0.0116 0.01259 0.0136 0.40% VisMF::Write(FabArray) 2 0.009142 0.00971 0.01274 0.37% FabArray::setDomainBndry() 41 0.006615 0.01047 0.01261 0.37% Amr::writePlotFile() 2 0.008167 0.01127 0.01202 0.35% Castro::initMFs() 1 0.006575 0.007825 0.01074 0.31% Amr::coarseTimeStep() 10 0.00137 0.007538 0.0106 0.31% Castro::construct_old_gravity_source() 10 0.007949 0.009371 0.009967 0.29% StateData::define() 4 0.005372 0.006358 0.00839 0.24% Castro::construct_new_source() 50 0.005778 0.006149 0.006474 0.19% main() 1 0.003759 0.00427 0.004459 0.13% Gravity::get_new_grav_vector() 11 0.002996 0.00355 0.003853 0.11% Gravity::get_old_grav_vector() 10 0.001746 0.002061 0.002584 0.08% Castro::finalize_do_advance() 10 0.0005334 0.001046 0.001296 0.04% AmrLevel::FillPatch() 41 0.0008165 0.001018 0.001106 0.03% Amr::timeStep() 10 0.0001356 0.0001872 0.0004246 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002625 0.0002992 0.0003484 0.01% Castro::clean_state() 62 0.0001401 0.0001614 0.000213 0.01% Castro::do_advance_ctu() 10 0.0001486 0.0001637 0.0001899 0.01% StateDataPhysBCFunct::() 41 9.946e-05 0.0001228 0.0001614 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001052 0.0001205 0.0001431 0.00% Castro::do_old_sources() 10 7.672e-05 9.227e-05 0.0001086 0.00% FabArray::ParallelCopy() 41 8.397e-05 9.452e-05 0.000105 0.00% FillPatchSingleLevel 41 7.249e-05 8.361e-05 9.082e-05 0.00% Amr::FinalizeInit() 1 3.742e-06 1.386e-05 8.094e-05 0.00% Castro::construct_old_source() 50 5.829e-05 6.732e-05 7.571e-05 0.00% Castro::do_new_sources() 10 5.406e-05 6.26e-05 7.373e-05 0.00% Castro::Castro() 1 3.931e-05 5.582e-05 7.081e-05 0.00% Amr::defBaseLevel() 1 3.707e-05 4.616e-05 6.11e-05 0.00% Castro::advance() 10 4.232e-05 4.833e-05 5.907e-05 0.00% Castro::subcycle_advance_ctu() 10 4.507e-05 5.013e-05 5.623e-05 0.00% Castro::apply_source_to_state() 20 3.932e-05 5.217e-05 5.597e-05 0.00% Castro::construct_old_gravity() 10 3.558e-05 4.243e-05 5.186e-05 0.00% Castro::construct_new_gravity() 10 3.174e-05 3.506e-05 4.404e-05 0.00% Castro::post_timestep() 10 1.501e-05 2.045e-05 3.248e-05 0.00% Castro::check_for_nan() 20 2.331e-05 2.657e-05 3.055e-05 0.00% Castro::expand_state() 10 2.455e-05 2.666e-05 3.001e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.437e-06 1.415e-05 2.205e-05 0.00% Castro::post_init() 1 1.541e-05 1.771e-05 2.066e-05 0.00% Castro::computeNewDt() 9 9.171e-06 1.12e-05 1.53e-05 0.00% Amr::InitializeInit() 1 2.661e-06 3.756e-06 7.218e-06 0.00% Castro::computeInitialDt() 2 3.046e-06 3.68e-06 4.45e-06 0.00% Amr::init() 1 1.832e-06 2.246e-06 2.646e-06 0.00% Amr::initialInit() 1 1.749e-06 1.997e-06 2.363e-06 0.00% Other 256 0.01097 0.01612 0.01958 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.425 3.429 3.431 100.00% Amr::coarseTimeStep() 10 3.223 3.223 3.223 93.95% Amr::timeStep() 10 3.203 3.206 3.212 93.61% Castro::advance() 10 3.187 3.188 3.192 93.03% Castro::subcycle_advance_ctu() 10 3.1 3.111 3.116 90.81% Castro::do_advance_ctu() 10 3.1 3.111 3.116 90.81% Castro::construct_ctu_hydro_source() 10 2.32 2.323 2.326 67.80% Gravity::make_radial_gravity() 21 0.3163 0.3367 0.347 10.11% AmrLevel::FillPatch() 41 0.206 0.2296 0.2476 7.22% Gravity::get_new_grav_vector() 11 0.2192 0.2211 0.2219 6.47% Castro::construct_old_gravity() 10 0.1864 0.2045 0.2145 6.25% Gravity::get_old_grav_vector() 10 0.1852 0.2036 0.2138 6.23% FillPatchIterator::Initialize 41 0.1734 0.1965 0.2109 6.15% Castro::initialize_do_advance() 10 0.1726 0.1871 0.2067 6.02% Castro::construct_new_gravity() 10 0.1942 0.1952 0.1959 5.71% Amr::init() 1 0.1902 0.1936 0.1953 5.69% Amr::initialInit() 1 0.1739 0.1773 0.1788 5.21% FillPatchIterator::FillFromLevel0() 41 0.1244 0.1518 0.1648 4.80% FillPatchSingleLevel 41 0.1243 0.1517 0.1647 4.80% Castro::expand_state() 10 0.1133 0.1321 0.1486 4.33% Amr::InitializeInit() 1 0.06109 0.09942 0.1442 4.20% Amr::defBaseLevel() 1 0.06109 0.09942 0.1442 4.20% FabArray::ParallelCopy() 41 0.09322 0.1193 0.1306 3.81% Castro::clean_state() 62 0.114 0.1182 0.129 3.76% check_for_negative_density() 10 0.0392 0.09392 0.1233 3.59% Castro::initData() 1 0.04078 0.07797 0.1211 3.53% Amr::FinalizeInit() 1 0.0297 0.07791 0.1172 3.42% Castro::estTimeStep() 21 0.02885 0.07708 0.1166 3.40% Castro::do_old_sources() 10 0.09297 0.1015 0.1055 3.07% amrex::Copy() 193 0.07793 0.08205 0.09267 2.70% Castro::computeInitialDt() 2 0.002311 0.05057 0.09011 2.63% FabArray::ParallelCopy_finish() 41 0.05083 0.07741 0.08788 2.56% FabArray::setVal() 143 0.0637 0.07212 0.08431 2.46% Castro::initialize_advance() 10 0.06832 0.07362 0.08382 2.44% Castro::computeTemp() 63 0.06204 0.06538 0.07023 2.05% Castro::do_new_sources() 10 0.06056 0.06445 0.0677 1.97% Castro::normalize_species() 62 0.04498 0.04749 0.05344 1.56% Castro::reset_internal_energy(MultiFab) 63 0.04447 0.04709 0.05034 1.47% Castro::reset_internal_energy(Fab) 1008 0.04417 0.04679 0.05 1.46% FabArray::ParallelCopy_nowait() 41 0.03837 0.04181 0.04285 1.25% StateDataPhysBCFunct::() 41 0.02983 0.03233 0.03547 1.03% StateData::FillBoundary(geom) 41 0.02968 0.03221 0.03531 1.03% Castro::construct_new_source() 50 0.02917 0.03042 0.03166 0.92% Gravity::interpolate_monopole_grav() 21 0.02632 0.02726 0.02997 0.87% Castro::post_init() 1 0.02664 0.02694 0.02724 0.79% Castro::construct_new_gravity_source() 10 0.02306 0.02427 0.02535 0.74% Amr::writePlotFile() 2 0.02354 0.02385 0.02415 0.70% Castro::post_timestep() 10 0.01529 0.01769 0.02398 0.70% Castro::finalize_do_advance() 10 0.01479 0.0186 0.02272 0.66% Castro::check_for_nan() 20 0.01056 0.01198 0.01501 0.44% MultiFab::contains_nan() 20 0.01053 0.01195 0.01498 0.44% Castro::Castro() 1 0.01017 0.01154 0.01481 0.43% Castro::apply_source_to_state() 20 0.01165 0.01264 0.01366 0.40% FabArray::Saxpy() 20 0.0116 0.01259 0.0136 0.40% VisMF::Write(FabArray) 2 0.009142 0.00971 0.01274 0.37% FabArray::setDomainBndry() 41 0.006615 0.01047 0.01261 0.37% Castro::initMFs() 1 0.006575 0.007825 0.01074 0.31% Castro::construct_old_source() 50 0.008009 0.009438 0.01003 0.29% Castro::construct_old_gravity_source() 10 0.007949 0.009371 0.009967 0.29% Castro::computeNewDt() 9 0.008954 0.008968 0.008979 0.26% AmrLevel::AmrLevel(dm) 1 0.005381 0.006372 0.008411 0.25% StateData::define() 4 0.005372 0.006358 0.00839 0.24% Other 256 0.01566 0.02479 0.03206 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 38 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8650 KiB 8660 KiB 8664 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6724 KiB 6731 KiB 6738 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7125 KiB 7134 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4511 KiB 4532 KiB 4542 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 224 KiB 255 KiB 277 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2784 KiB 2788 KiB 2794 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 250 KiB 258 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 54 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 76 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized