Initializing AMReX (25.06-22-g1d307c2c661a-dirty)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.06-22-g1d307c2c661a-dirty) initialized Starting run at 16:22:32 UTC on 2025-08-03. Successfully read inputs file ... Castro git describe: 25.07-83-g9c4cd7c4c AMReX git describe: 25.06-22-g1d307c2c6-dirty Microphysics git describe: joss_submit-1-ga350de6c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014317832 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.347935039 [STEP 1] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.344514706 [STEP 2] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.326603455 [STEP 3] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.325692502 [STEP 4] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.390005279 [STEP 5] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.314389865 [STEP 6] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308088445 [STEP 7] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.306763346 [STEP 8] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308898646 [STEP 9] FAB kilobyte spread across MPI nodes: [60214 ... 60214] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.307823213 [STEP 10] FAB kilobyte spread across MPI nodes: [60214 ... 60214] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007580917 seconds Ending run at 16:22:36 UTC on 2025-08-03. Run time = 3.471520984 Run time without initialization = 3.293754967 Average number of zones advanced per microsecond: 0.796 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4638 ... 3.4690 ... 3.4717 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2237 2.2798 2.3111 66.57% Gravity::make_radial_gravity() 21 0.2885 0.3066 0.3241 9.34% check_for_negative_density() 10 0.05446 0.08553 0.1432 4.13% Castro::initData() 1 0.04581 0.07678 0.1073 3.09% amrex::Copy() 193 0.07354 0.08881 0.1013 2.92% FabArray::ParallelCopy_finish() 41 0.04554 0.06233 0.09269 2.67% Castro::estTimeStep() 21 0.02937 0.05549 0.09063 2.61% FabArray::setVal() 143 0.06244 0.07376 0.08077 2.33% Castro::normalize_species() 62 0.04522 0.04655 0.05156 1.49% Castro::reset_internal_energy(Fab) 1008 0.04294 0.04591 0.04872 1.40% FabArray::ParallelCopy_nowait() 41 0.03715 0.04254 0.04465 1.29% FillPatchIterator::Initialize 41 0.03501 0.0401 0.04297 1.24% StateData::FillBoundary(geom) 41 0.03589 0.03741 0.0396 1.14% Gravity::interpolate_monopole_grav() 21 0.03078 0.03149 0.03335 0.96% Castro::computeTemp() 63 0.01748 0.01917 0.02771 0.80% Castro::construct_new_gravity_source() 10 0.02325 0.02452 0.02691 0.78% Castro::initialize_do_advance() 10 0.01207 0.01698 0.01849 0.53% Castro::initialize_advance() 10 0.006216 0.01269 0.01632 0.47% MultiFab::contains_nan() 20 0.01094 0.01252 0.01561 0.45% FabArray::setDomainBndry() 41 0.00901 0.0111 0.01493 0.43% FabArray::Saxpy() 20 0.0108 0.01219 0.01317 0.38% VisMF::Write(FabArray) 2 0.008734 0.00952 0.01194 0.34% Amr::writePlotFile() 2 0.007473 0.009954 0.0119 0.34% Castro::initMFs() 1 0.00642 0.008071 0.0118 0.34% StateData::define() 4 0.005803 0.007243 0.0105 0.30% Castro::construct_old_gravity_source() 10 0.007322 0.00967 0.01028 0.30% Castro::construct_new_source() 50 0.006487 0.00669 0.006941 0.20% Gravity::get_old_grav_vector() 10 0.002102 0.002987 0.005331 0.15% main() 1 0.003281 0.004116 0.004736 0.14% Gravity::get_new_grav_vector() 11 0.003339 0.004331 0.00461 0.13% Amr::coarseTimeStep() 10 0.001066 0.002086 0.003078 0.09% Castro::finalize_do_advance() 10 0.0005334 0.001091 0.001202 0.03% AmrLevel::FillPatch() 41 0.0008094 0.001078 0.001191 0.03% Amr::timeStep() 10 0.000128 0.0001881 0.000482 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002811 0.000294 0.0003373 0.01% Castro::do_advance_ctu() 10 0.000147 0.0001655 0.0001825 0.01% Castro::clean_state() 62 0.0001395 0.0001539 0.0001752 0.01% StateDataPhysBCFunct::() 41 9.916e-05 0.0001197 0.0001428 0.00% FillPatchIterator::FillFromLevel0() 41 9.969e-05 0.0001075 0.000115 0.00% FabArray::ParallelCopy() 41 8.685e-05 9.599e-05 0.0001069 0.00% Amr::FinalizeInit() 1 3.684e-06 1.756e-05 0.0001001 0.00% FillPatchSingleLevel 41 7.531e-05 8.369e-05 9.541e-05 0.00% Castro::do_old_sources() 10 7.786e-05 8.613e-05 9.183e-05 0.00% Castro::do_new_sources() 10 5.849e-05 6.857e-05 8.191e-05 0.00% Castro::construct_old_source() 50 5.36e-05 6.507e-05 8.136e-05 0.00% Castro::Castro() 1 4.929e-05 6.464e-05 7.783e-05 0.00% Castro::apply_source_to_state() 20 4.177e-05 5.39e-05 6.913e-05 0.00% Amr::defBaseLevel() 1 3.636e-05 4.792e-05 5.999e-05 0.00% Castro::advance() 10 4.293e-05 5.022e-05 5.854e-05 0.00% Castro::subcycle_advance_ctu() 10 3.995e-05 4.736e-05 5.529e-05 0.00% Castro::construct_old_gravity() 10 3.301e-05 4.254e-05 5.333e-05 0.00% Castro::construct_new_gravity() 10 3.036e-05 3.473e-05 4.555e-05 0.00% Castro::check_for_nan() 20 2.138e-05 2.792e-05 3.845e-05 0.00% Castro::expand_state() 10 2.171e-05 2.543e-05 3.341e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.13e-05 1.602e-05 2.975e-05 0.00% Castro::post_init() 1 1.54e-05 1.779e-05 2.194e-05 0.00% Castro::post_timestep() 10 1.522e-05 1.732e-05 1.962e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 4.127e-06 7.746e-06 1.567e-05 0.00% Castro::computeNewDt() 9 8.604e-06 1.055e-05 1.395e-05 0.00% Amr::InitializeInit() 1 2.647e-06 4.223e-06 6.98e-06 0.00% Castro::computeInitialDt() 2 3.71e-06 4.111e-06 5.279e-06 0.00% Amr::init() 1 1.918e-06 2.326e-06 3.26e-06 0.00% Amr::initialInit() 1 1.414e-06 1.948e-06 2.604e-06 0.00% Other 254 0.01111 0.01795 0.02229 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.464 3.469 3.472 100.00% Amr::coarseTimeStep() 10 3.281 3.282 3.282 94.52% Amr::timeStep() 10 3.269 3.27 3.271 94.21% Castro::advance() 10 3.253 3.254 3.254 93.73% Castro::subcycle_advance_ctu() 10 3.173 3.178 3.194 91.99% Castro::do_advance_ctu() 10 3.173 3.178 3.194 91.99% Castro::construct_ctu_hydro_source() 10 2.375 2.386 2.392 68.89% Gravity::make_radial_gravity() 21 0.3052 0.3229 0.3377 9.73% AmrLevel::FillPatch() 41 0.207 0.2314 0.2426 6.99% Castro::construct_old_gravity() 10 0.1989 0.2129 0.2242 6.46% Gravity::get_old_grav_vector() 10 0.1976 0.2121 0.2235 6.44% Gravity::get_new_grav_vector() 11 0.215 0.2162 0.2179 6.28% FillPatchIterator::Initialize 41 0.1731 0.194 0.2143 6.17% Castro::construct_new_gravity() 10 0.1907 0.1917 0.1933 5.57% Castro::initialize_do_advance() 10 0.1606 0.1698 0.1795 5.17% Amr::init() 1 0.1705 0.1754 0.1775 5.11% FillPatchIterator::FillFromLevel0() 41 0.1242 0.1428 0.1676 4.83% FillPatchSingleLevel 41 0.1241 0.1427 0.1675 4.82% Amr::initialInit() 1 0.1563 0.161 0.1632 4.70% check_for_negative_density() 10 0.05446 0.08553 0.1432 4.13% Amr::InitializeInit() 1 0.07394 0.1048 0.1345 3.87% Amr::defBaseLevel() 1 0.07393 0.1047 0.1345 3.87% FabArray::ParallelCopy() 41 0.0875 0.105 0.13 3.74% Castro::clean_state() 62 0.1125 0.1172 0.1258 3.62% Castro::expand_state() 10 0.1069 0.1126 0.1253 3.61% Castro::do_old_sources() 10 0.1051 0.1159 0.1253 3.61% Castro::initData() 1 0.04948 0.08056 0.1111 3.20% amrex::Copy() 193 0.07354 0.08881 0.1013 2.92% FabArray::ParallelCopy_finish() 41 0.04554 0.06233 0.09269 2.67% Castro::estTimeStep() 21 0.02937 0.05549 0.09063 2.61% Amr::FinalizeInit() 1 0.02864 0.05621 0.08782 2.53% FabArray::setVal() 143 0.06244 0.07376 0.08077 2.33% Castro::initialize_advance() 10 0.05632 0.07207 0.07711 2.22% Castro::computeTemp() 63 0.06071 0.06537 0.07536 2.17% Castro::do_new_sources() 10 0.06105 0.06578 0.07034 2.03% Castro::computeInitialDt() 2 0.00213 0.0299 0.06153 1.77% Castro::normalize_species() 62 0.04522 0.04655 0.05156 1.49% Castro::reset_internal_energy(MultiFab) 63 0.04323 0.0462 0.04901 1.41% Castro::reset_internal_energy(Fab) 1008 0.04294 0.04591 0.04872 1.40% FabArray::ParallelCopy_nowait() 41 0.03722 0.04261 0.04472 1.29% StateDataPhysBCFunct::() 41 0.03602 0.03753 0.03971 1.14% StateData::FillBoundary(geom) 41 0.03589 0.03741 0.0396 1.14% Castro::construct_new_source() 50 0.02974 0.03121 0.03374 0.97% Gravity::interpolate_monopole_grav() 21 0.03078 0.03149 0.03335 0.96% Castro::construct_new_gravity_source() 10 0.02325 0.02452 0.02691 0.78% Castro::post_init() 1 0.02531 0.02572 0.02601 0.75% Amr::writePlotFile() 2 0.02191 0.02211 0.02258 0.65% Castro::finalize_do_advance() 10 0.01247 0.01809 0.02237 0.64% Castro::post_timestep() 10 0.01457 0.01576 0.01686 0.49% Castro::Castro() 1 0.01002 0.01196 0.01654 0.48% Castro::check_for_nan() 20 0.01096 0.01255 0.01565 0.45% MultiFab::contains_nan() 20 0.01094 0.01252 0.01561 0.45% FabArray::setDomainBndry() 41 0.00901 0.0111 0.01493 0.43% Castro::apply_source_to_state() 20 0.01084 0.01224 0.01322 0.38% FabArray::Saxpy() 20 0.0108 0.01219 0.01317 0.38% VisMF::Write(FabArray) 2 0.008734 0.00952 0.01194 0.34% Castro::initMFs() 1 0.00642 0.008071 0.0118 0.34% AmrLevel::AmrLevel(dm) 1 0.005814 0.007259 0.01053 0.30% StateData::define() 4 0.005803 0.007243 0.0105 0.30% Castro::construct_old_source() 50 0.007375 0.009735 0.01036 0.30% Castro::construct_old_gravity_source() 10 0.007322 0.00967 0.01028 0.30% Castro::computeNewDt() 9 0.008575 0.008601 0.008612 0.25% DistributionMapping::SFCProcessorMapDoIt() 1 6.547e-05 0.004915 0.007061 0.20% Other 254 0.01581 0.02291 0.02766 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 45 B 101 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8642 KiB 8654 KiB 8659 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 7438 KiB 7448 KiB 7459 KiB 7867 KiB 7867 KiB 7867 KiB StateData::define() 32 32 7829 KiB 7841 KiB 7851 KiB 7867 KiB 7867 KiB 7867 KiB Castro::initialize_do_advance() 80 80 4568 KiB 4576 KiB 4598 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 227 KiB 251 KiB 268 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 3275 KiB 3280 KiB 3286 KiB 3500 KiB 3500 KiB 3500 KiB Gravity::make_radial_gravity() 168 168 224 KiB 237 KiB 248 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 48 KiB 62 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2023 KiB 2026 KiB 2027 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 92 KiB 93 KiB 94 KiB 1500 KiB 1500 KiB 1500 KiB Gravity::get_old_grav_vector() 80 80 85 KiB 91 KiB 96 KiB 1500 KiB 1500 KiB 1500 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.06-22-g1d307c2c661a-dirty) finalized